co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
3	GO:0071731: response to nitric oxide	0.00E+00
4	GO:1990258: histone glutamine methylation	0.00E+00
5	GO:0006412: translation	3.15E-71
6	GO:0042254: ribosome biogenesis	7.84E-30
7	GO:0000027: ribosomal large subunit assembly	6.16E-14
8	GO:0006364: rRNA processing	6.34E-10
9	GO:0009735: response to cytokinin	2.48E-07
10	GO:0000028: ribosomal small subunit assembly	6.04E-07
11	GO:0009793: embryo development ending in seed dormancy	1.54E-06
12	GO:0002181: cytoplasmic translation	2.22E-06
13	GO:0031167: rRNA methylation	1.65E-05
14	GO:0007005: mitochondrion organization	1.80E-05
15	GO:0001510: RNA methylation	7.89E-05
16	GO:0006407: rRNA export from nucleus	1.06E-04
17	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.06E-04
18	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.06E-04
19	GO:0010162: seed dormancy process	1.41E-04
20	GO:0006626: protein targeting to mitochondrion	2.19E-04
21	GO:0045041: protein import into mitochondrial intermembrane space	2.48E-04
22	GO:0009944: polarity specification of adaxial/abaxial axis	3.49E-04
23	GO:1902626: assembly of large subunit precursor of preribosome	4.12E-04
24	GO:0042256: mature ribosome assembly	4.12E-04
25	GO:0009294: DNA mediated transformation	5.04E-04
26	GO:0006986: response to unfolded protein	5.92E-04
27	GO:0070301: cellular response to hydrogen peroxide	5.92E-04
28	GO:0051085: chaperone mediated protein folding requiring cofactor	5.92E-04
29	GO:0006241: CTP biosynthetic process	5.92E-04
30	GO:0006165: nucleoside diphosphate phosphorylation	5.92E-04
31	GO:0006228: UTP biosynthetic process	5.92E-04
32	GO:0051131: chaperone-mediated protein complex assembly	5.92E-04
33	GO:0008033: tRNA processing	6.38E-04
34	GO:0000460: maturation of 5.8S rRNA	7.86E-04
35	GO:0042274: ribosomal small subunit biogenesis	7.86E-04
36	GO:0006183: GTP biosynthetic process	7.86E-04
37	GO:0032502: developmental process	8.94E-04
38	GO:0071493: cellular response to UV-B	9.92E-04
39	GO:0000470: maturation of LSU-rRNA	1.21E-03
40	GO:0006458: 'de novo' protein folding	1.45E-03
41	GO:0009955: adaxial/abaxial pattern specification	1.45E-03
42	GO:0042026: protein refolding	1.45E-03
43	GO:0042255: ribosome assembly	1.97E-03
44	GO:0001558: regulation of cell growth	2.24E-03
45	GO:0000387: spliceosomal snRNP assembly	2.84E-03
46	GO:0006820: anion transport	3.81E-03
47	GO:0010229: inflorescence development	4.16E-03
48	GO:0010102: lateral root morphogenesis	4.16E-03
49	GO:0048467: gynoecium development	4.52E-03
50	GO:0030150: protein import into mitochondrial matrix	5.65E-03
51	GO:0051302: regulation of cell division	6.05E-03
52	GO:0061077: chaperone-mediated protein folding	6.46E-03
53	GO:0040007: growth	7.30E-03
54	GO:0010501: RNA secondary structure unwinding	8.64E-03
55	GO:0000413: protein peptidyl-prolyl isomerization	8.64E-03
56	GO:0015986: ATP synthesis coupled proton transport	9.58E-03
57	GO:0009791: post-embryonic development	1.01E-02
58	GO:0046686: response to cadmium ion	1.04E-02
59	GO:0006457: protein folding	1.24E-02
60	GO:0016049: cell growth	1.59E-02
61	GO:0006811: ion transport	1.77E-02
62	GO:0048527: lateral root development	1.83E-02
63	GO:0009408: response to heat	2.33E-02
64	GO:0008283: cell proliferation	2.34E-02
65	GO:0009965: leaf morphogenesis	2.54E-02
66	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.68E-02
67	GO:0010224: response to UV-B	2.97E-02
68	GO:0009651: response to salt stress	3.24E-02
69	GO:0009734: auxin-activated signaling pathway	3.28E-02
70	GO:0016569: covalent chromatin modification	3.56E-02
71	GO:0009553: embryo sac development	3.64E-02
72	GO:0000398: mRNA splicing, via spliceosome	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003735: structural constituent of ribosome	1.31E-80
4	GO:0003729: mRNA binding	5.46E-26
5	GO:0003723: RNA binding	2.16E-08
6	GO:0008649: rRNA methyltransferase activity	2.22E-06
7	GO:0030515: snoRNA binding	4.78E-05
8	GO:0042134: rRNA primary transcript binding	1.06E-04
9	GO:0004407: histone deacetylase activity	3.49E-04
10	GO:0070180: large ribosomal subunit rRNA binding	4.12E-04
11	GO:0051082: unfolded protein binding	5.89E-04
12	GO:0004550: nucleoside diphosphate kinase activity	5.92E-04
13	GO:0008097: 5S rRNA binding	5.92E-04
14	GO:0019843: rRNA binding	7.81E-04
15	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.54E-03
16	GO:0008143: poly(A) binding	1.70E-03
17	GO:0008235: metalloexopeptidase activity	1.70E-03
18	GO:0015288: porin activity	1.97E-03
19	GO:0008308: voltage-gated anion channel activity	2.24E-03
20	GO:0044183: protein binding involved in protein folding	3.47E-03
21	GO:0015266: protein channel activity	4.16E-03
22	GO:0008266: poly(U) RNA binding	4.52E-03
23	GO:0008026: ATP-dependent helicase activity	5.03E-03
24	GO:0051087: chaperone binding	6.05E-03
25	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.10E-03
26	GO:0005507: copper ion binding	1.40E-02
27	GO:0004004: ATP-dependent RNA helicase activity	1.54E-02
28	GO:0003746: translation elongation factor activity	1.95E-02
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.61E-02
30	GO:0046872: metal ion binding	2.92E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022625: cytosolic large ribosomal subunit	1.34E-64
3	GO:0022626: cytosolic ribosome	2.07E-61
4	GO:0005840: ribosome	1.12E-50
5	GO:0005730: nucleolus	1.41E-41
6	GO:0022627: cytosolic small ribosomal subunit	1.16E-28
7	GO:0005829: cytosol	9.57E-23
8	GO:0009506: plasmodesma	6.27E-20
9	GO:0005737: cytoplasm	1.73E-16
10	GO:0005774: vacuolar membrane	2.23E-15
11	GO:0015934: large ribosomal subunit	8.41E-15
12	GO:0016020: membrane	5.63E-11
13	GO:0005773: vacuole	1.72E-09
14	GO:0005618: cell wall	2.70E-09
15	GO:0015935: small ribosomal subunit	2.43E-07
16	GO:0031428: box C/D snoRNP complex	2.49E-05
17	GO:0005886: plasma membrane	6.56E-05
18	GO:0005742: mitochondrial outer membrane translocase complex	7.89E-05
19	GO:0030686: 90S preribosome	1.06E-04
20	GO:0015030: Cajal body	1.18E-04
21	GO:0032040: small-subunit processome	1.91E-04
22	GO:0034719: SMN-Sm protein complex	4.12E-04
23	GO:0005682: U5 snRNP	7.86E-04
24	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	7.86E-04
25	GO:0005687: U4 snRNP	9.92E-04
26	GO:0097526: spliceosomal tri-snRNP complex	9.92E-04
27	GO:0005759: mitochondrial matrix	1.03E-03
28	GO:0005689: U12-type spliceosomal complex	1.45E-03
29	GO:0030687: preribosome, large subunit precursor	1.70E-03
30	GO:0009507: chloroplast	1.95E-03
31	GO:0071004: U2-type prespliceosome	1.97E-03
32	GO:0046930: pore complex	2.24E-03
33	GO:0005685: U1 snRNP	2.53E-03
34	GO:0071011: precatalytic spliceosome	2.84E-03
35	GO:0005686: U2 snRNP	3.15E-03
36	GO:0071013: catalytic step 2 spliceosome	3.47E-03
37	GO:0005747: mitochondrial respiratory chain complex I	4.08E-03
38	GO:0019013: viral nucleocapsid	4.16E-03
39	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.88E-03
40	GO:0005758: mitochondrial intermembrane space	5.65E-03
41	GO:0005741: mitochondrial outer membrane	6.46E-03
42	GO:0016592: mediator complex	1.11E-02
43	GO:0030529: intracellular ribonucleoprotein complex	1.37E-02
44	GO:0005743: mitochondrial inner membrane	2.17E-02
45	GO:0005681: spliceosomal complex	3.26E-02
46	GO:0005732: small nucleolar ribonucleoprotein complex	3.96E-02