co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006952: defense response	6.73E-06
2	GO:0006468: protein phosphorylation	8.53E-06
3	GO:0048194: Golgi vesicle budding	1.73E-05
4	GO:0000187: activation of MAPK activity	1.73E-05
5	GO:0009814: defense response, incompatible interaction	7.81E-05
6	GO:0010150: leaf senescence	9.30E-05
7	GO:0009612: response to mechanical stimulus	1.04E-04
8	GO:0007166: cell surface receptor signaling pathway	1.23E-04
9	GO:0046470: phosphatidylcholine metabolic process	1.37E-04
10	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.76E-04
11	GO:0006805: xenobiotic metabolic process	2.09E-04
12	GO:0071366: cellular response to indolebutyric acid stimulus	2.09E-04
13	GO:0006643: membrane lipid metabolic process	2.09E-04
14	GO:0055071: manganese ion homeostasis	2.09E-04
15	GO:0006680: glucosylceramide catabolic process	2.09E-04
16	GO:0060862: negative regulation of floral organ abscission	2.09E-04
17	GO:0043562: cellular response to nitrogen levels	2.19E-04
18	GO:0009816: defense response to bacterium, incompatible interaction	3.44E-04
19	GO:0009627: systemic acquired resistance	3.70E-04
20	GO:0043069: negative regulation of programmed cell death	3.71E-04
21	GO:0052544: defense response by callose deposition in cell wall	4.29E-04
22	GO:0009817: defense response to fungus, incompatible interaction	4.53E-04
23	GO:0015914: phospholipid transport	4.66E-04
24	GO:0080185: effector dependent induction by symbiont of host immune response	4.66E-04
25	GO:0006212: uracil catabolic process	4.66E-04
26	GO:0031349: positive regulation of defense response	4.66E-04
27	GO:0019483: beta-alanine biosynthetic process	4.66E-04
28	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.66E-04
29	GO:0010541: acropetal auxin transport	4.66E-04
30	GO:0002221: pattern recognition receptor signaling pathway	4.66E-04
31	GO:0006508: proteolysis	6.56E-04
32	GO:0070588: calcium ion transmembrane transport	7.02E-04
33	GO:0042344: indole glucosinolate catabolic process	7.59E-04
34	GO:0009062: fatty acid catabolic process	7.59E-04
35	GO:1900140: regulation of seedling development	7.59E-04
36	GO:0051176: positive regulation of sulfur metabolic process	7.59E-04
37	GO:0000162: tryptophan biosynthetic process	7.82E-04
38	GO:0080147: root hair cell development	8.63E-04
39	GO:0007231: osmosensory signaling pathway	1.08E-03
40	GO:0009399: nitrogen fixation	1.08E-03
41	GO:0002679: respiratory burst involved in defense response	1.08E-03
42	GO:0001676: long-chain fatty acid metabolic process	1.08E-03
43	GO:0060548: negative regulation of cell death	1.44E-03
44	GO:0048830: adventitious root development	1.44E-03
45	GO:0033500: carbohydrate homeostasis	1.44E-03
46	GO:2000038: regulation of stomatal complex development	1.44E-03
47	GO:0080142: regulation of salicylic acid biosynthetic process	1.44E-03
48	GO:0006542: glutamine biosynthetic process	1.44E-03
49	GO:0042391: regulation of membrane potential	1.56E-03
50	GO:0050832: defense response to fungus	1.82E-03
51	GO:0031365: N-terminal protein amino acid modification	1.83E-03
52	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.85E-03
53	GO:0010200: response to chitin	1.85E-03
54	GO:0006623: protein targeting to vacuole	1.94E-03
55	GO:0015691: cadmium ion transport	2.26E-03
56	GO:0006751: glutathione catabolic process	2.26E-03
57	GO:0006828: manganese ion transport	2.26E-03
58	GO:0060918: auxin transport	2.26E-03
59	GO:1900425: negative regulation of defense response to bacterium	2.26E-03
60	GO:0006014: D-ribose metabolic process	2.26E-03
61	GO:0009759: indole glucosinolate biosynthetic process	2.26E-03
62	GO:0010942: positive regulation of cell death	2.26E-03
63	GO:0030163: protein catabolic process	2.35E-03
64	GO:2000037: regulation of stomatal complex patterning	2.71E-03
65	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.71E-03
66	GO:0000911: cytokinesis by cell plate formation	2.71E-03
67	GO:0009615: response to virus	2.98E-03
68	GO:0016042: lipid catabolic process	3.05E-03
69	GO:0010044: response to aluminum ion	3.20E-03
70	GO:0043090: amino acid import	3.20E-03
71	GO:0071446: cellular response to salicylic acid stimulus	3.20E-03
72	GO:0009819: drought recovery	3.71E-03
73	GO:0030162: regulation of proteolysis	3.71E-03
74	GO:1900150: regulation of defense response to fungus	3.71E-03
75	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.24E-03
76	GO:0006002: fructose 6-phosphate metabolic process	4.24E-03
77	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.24E-03
78	GO:0009821: alkaloid biosynthetic process	4.80E-03
79	GO:0051865: protein autoubiquitination	4.80E-03
80	GO:0009641: shade avoidance	5.99E-03
81	GO:0006995: cellular response to nitrogen starvation	5.99E-03
82	GO:0006032: chitin catabolic process	5.99E-03
83	GO:0006979: response to oxidative stress	6.57E-03
84	GO:0009684: indoleacetic acid biosynthetic process	6.62E-03
85	GO:0006816: calcium ion transport	6.62E-03
86	GO:0009682: induced systemic resistance	6.62E-03
87	GO:0072593: reactive oxygen species metabolic process	6.62E-03
88	GO:0009636: response to toxic substance	7.11E-03
89	GO:0000165: MAPK cascade	7.66E-03
90	GO:0006807: nitrogen compound metabolic process	7.96E-03
91	GO:0010229: inflorescence development	7.96E-03
92	GO:0010053: root epidermal cell differentiation	9.37E-03
93	GO:0009833: plant-type primary cell wall biogenesis	1.01E-02
94	GO:0009626: plant-type hypersensitive response	1.08E-02
95	GO:2000377: regulation of reactive oxygen species metabolic process	1.09E-02
96	GO:0009620: response to fungus	1.11E-02
97	GO:0016998: cell wall macromolecule catabolic process	1.25E-02
98	GO:0055114: oxidation-reduction process	1.31E-02
99	GO:0016226: iron-sulfur cluster assembly	1.33E-02
100	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.33E-02
101	GO:0031348: negative regulation of defense response	1.33E-02
102	GO:0009751: response to salicylic acid	1.40E-02
103	GO:0010227: floral organ abscission	1.41E-02
104	GO:0006012: galactose metabolic process	1.41E-02
105	GO:0009625: response to insect	1.41E-02
106	GO:0010584: pollen exine formation	1.50E-02
107	GO:0009058: biosynthetic process	1.61E-02
108	GO:0042631: cellular response to water deprivation	1.68E-02
109	GO:0000271: polysaccharide biosynthetic process	1.68E-02
110	GO:0000413: protein peptidyl-prolyl isomerization	1.68E-02
111	GO:0010051: xylem and phloem pattern formation	1.68E-02
112	GO:0046323: glucose import	1.77E-02
113	GO:0008360: regulation of cell shape	1.77E-02
114	GO:0010197: polar nucleus fusion	1.77E-02
115	GO:0009646: response to absence of light	1.86E-02
116	GO:0061025: membrane fusion	1.86E-02
117	GO:0010183: pollen tube guidance	1.96E-02
118	GO:0019252: starch biosynthetic process	1.96E-02
119	GO:0010193: response to ozone	2.06E-02
120	GO:0000302: response to reactive oxygen species	2.06E-02
121	GO:0006635: fatty acid beta-oxidation	2.06E-02
122	GO:0071555: cell wall organization	2.20E-02
123	GO:0042742: defense response to bacterium	2.20E-02
124	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.36E-02
125	GO:0009737: response to abscisic acid	2.38E-02
126	GO:0006470: protein dephosphorylation	2.42E-02
127	GO:0006904: vesicle docking involved in exocytosis	2.46E-02
128	GO:0009617: response to bacterium	2.52E-02
129	GO:0042128: nitrate assimilation	2.89E-02
130	GO:0030244: cellulose biosynthetic process	3.23E-02
131	GO:0008219: cell death	3.23E-02
132	GO:0009813: flavonoid biosynthetic process	3.34E-02
133	GO:0010311: lateral root formation	3.34E-02
134	GO:0009832: plant-type cell wall biogenesis	3.34E-02
135	GO:0009407: toxin catabolic process	3.46E-02
136	GO:0009631: cold acclimation	3.58E-02
137	GO:0048527: lateral root development	3.58E-02
138	GO:0010119: regulation of stomatal movement	3.58E-02
139	GO:0006865: amino acid transport	3.70E-02
140	GO:0009723: response to ethylene	3.78E-02
141	GO:0016051: carbohydrate biosynthetic process	3.82E-02
142	GO:0006099: tricarboxylic acid cycle	3.94E-02
143	GO:0006887: exocytosis	4.32E-02
144	GO:0006631: fatty acid metabolic process	4.32E-02
145	GO:0046777: protein autophosphorylation	4.32E-02
146	GO:0044550: secondary metabolite biosynthetic process	4.39E-02
147	GO:0051707: response to other organism	4.57E-02
148	GO:0010114: response to red light	4.57E-02
149	GO:0009926: auxin polar transport	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
2	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
3	GO:0015370: solute:sodium symporter activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
6	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
7	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
8	GO:0015410: manganese-transporting ATPase activity	0.00E+00
9	GO:0005524: ATP binding	1.13E-08
10	GO:0016301: kinase activity	5.85E-07
11	GO:0004012: phospholipid-translocating ATPase activity	1.29E-06
12	GO:0005388: calcium-transporting ATPase activity	2.39E-05
13	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.39E-05
14	GO:0004190: aspartic-type endopeptidase activity	3.54E-05
15	GO:0005516: calmodulin binding	4.65E-05
16	GO:0004674: protein serine/threonine kinase activity	7.62E-05
17	GO:0005509: calcium ion binding	9.01E-05
18	GO:0004656: procollagen-proline 4-dioxygenase activity	1.04E-04
19	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.76E-04
20	GO:0004708: MAP kinase kinase activity	1.76E-04
21	GO:0008809: carnitine racemase activity	2.09E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.09E-04
23	GO:1901149: salicylic acid binding	2.09E-04
24	GO:0015085: calcium ion transmembrane transporter activity	2.09E-04
25	GO:0004348: glucosylceramidase activity	2.09E-04
26	GO:0015168: glycerol transmembrane transporter activity	2.09E-04
27	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.09E-04
28	GO:0004630: phospholipase D activity	2.19E-04
29	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.19E-04
30	GO:0004713: protein tyrosine kinase activity	3.71E-04
31	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.94E-04
32	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.12E-04
33	GO:0030552: cAMP binding	7.02E-04
34	GO:0030553: cGMP binding	7.02E-04
35	GO:0052692: raffinose alpha-galactosidase activity	7.59E-04
36	GO:0016174: NAD(P)H oxidase activity	7.59E-04
37	GO:0004557: alpha-galactosidase activity	7.59E-04
38	GO:0003840: gamma-glutamyltransferase activity	7.59E-04
39	GO:0036374: glutathione hydrolase activity	7.59E-04
40	GO:0031418: L-ascorbic acid binding	8.63E-04
41	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.47E-04
42	GO:0005216: ion channel activity	9.49E-04
43	GO:0005354: galactose transmembrane transporter activity	1.08E-03
44	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.08E-03
45	GO:0015086: cadmium ion transmembrane transporter activity	1.08E-03
46	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.08E-03
47	GO:0015204: urea transmembrane transporter activity	1.44E-03
48	GO:0005249: voltage-gated potassium channel activity	1.56E-03
49	GO:0030551: cyclic nucleotide binding	1.56E-03
50	GO:0005506: iron ion binding	1.76E-03
51	GO:0004356: glutamate-ammonia ligase activity	1.83E-03
52	GO:0045431: flavonol synthase activity	1.83E-03
53	GO:0015145: monosaccharide transmembrane transporter activity	1.83E-03
54	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.83E-03
55	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.66E-03
56	GO:0102391: decanoate--CoA ligase activity	2.71E-03
57	GO:0004747: ribokinase activity	2.71E-03
58	GO:0008235: metalloexopeptidase activity	3.20E-03
59	GO:0003872: 6-phosphofructokinase activity	3.20E-03
60	GO:0004467: long-chain fatty acid-CoA ligase activity	3.20E-03
61	GO:0004034: aldose 1-epimerase activity	3.71E-03
62	GO:0008865: fructokinase activity	3.71E-03
63	GO:0003843: 1,3-beta-D-glucan synthase activity	4.24E-03
64	GO:0071949: FAD binding	4.80E-03
65	GO:0016844: strictosidine synthase activity	5.38E-03
66	GO:0004568: chitinase activity	5.99E-03
67	GO:0008047: enzyme activator activity	5.99E-03
68	GO:0000287: magnesium ion binding	6.45E-03
69	GO:0004177: aminopeptidase activity	6.62E-03
70	GO:0008559: xenobiotic-transporting ATPase activity	6.62E-03
71	GO:0015293: symporter activity	7.11E-03
72	GO:0031072: heat shock protein binding	7.96E-03
73	GO:0005262: calcium channel activity	7.96E-03
74	GO:0016298: lipase activity	8.83E-03
75	GO:0003712: transcription cofactor activity	9.37E-03
76	GO:0015171: amino acid transmembrane transporter activity	9.46E-03
77	GO:0031625: ubiquitin protein ligase binding	9.46E-03
78	GO:0003954: NADH dehydrogenase activity	1.09E-02
79	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.21E-02
80	GO:0033612: receptor serine/threonine kinase binding	1.25E-02
81	GO:0019825: oxygen binding	1.30E-02
82	GO:0016760: cellulose synthase (UDP-forming) activity	1.41E-02
83	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.57E-02
84	GO:0016853: isomerase activity	1.86E-02
85	GO:0010181: FMN binding	1.86E-02
86	GO:0005355: glucose transmembrane transporter activity	1.86E-02
87	GO:0016759: cellulose synthase activity	2.36E-02
88	GO:0051213: dioxygenase activity	2.67E-02
89	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.89E-02
90	GO:0004683: calmodulin-dependent protein kinase activity	3.00E-02
91	GO:0030247: polysaccharide binding	3.00E-02
92	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.11E-02
93	GO:0016491: oxidoreductase activity	3.30E-02
94	GO:0004222: metalloendopeptidase activity	3.46E-02
95	GO:0004842: ubiquitin-protein transferase activity	3.54E-02
96	GO:0004497: monooxygenase activity	4.04E-02
97	GO:0046872: metal ion binding	4.22E-02
98	GO:0030246: carbohydrate binding	4.23E-02
99	GO:0020037: heme binding	4.29E-02
100	GO:0004364: glutathione transferase activity	4.45E-02
101	GO:0052689: carboxylic ester hydrolase activity	4.46E-02
102	GO:0005484: SNAP receptor activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.34E-14
2	GO:0016021: integral component of membrane	1.33E-09
3	GO:0005887: integral component of plasma membrane	4.06E-05
4	GO:0031902: late endosome membrane	7.79E-05
5	GO:0005789: endoplasmic reticulum membrane	8.62E-05
6	GO:0045252: oxoglutarate dehydrogenase complex	2.09E-04
7	GO:0000139: Golgi membrane	2.66E-04
8	GO:0016020: membrane	2.99E-04
9	GO:0017119: Golgi transport complex	3.71E-04
10	GO:0031304: intrinsic component of mitochondrial inner membrane	4.66E-04
11	GO:0005901: caveola	4.66E-04
12	GO:0070062: extracellular exosome	1.08E-03
13	GO:0005802: trans-Golgi network	1.15E-03
14	GO:0005945: 6-phosphofructokinase complex	1.83E-03
15	GO:0009504: cell plate	1.94E-03
16	GO:0000148: 1,3-beta-D-glucan synthase complex	4.24E-03
17	GO:0030665: clathrin-coated vesicle membrane	5.38E-03
18	GO:0005783: endoplasmic reticulum	5.40E-03
19	GO:0005774: vacuolar membrane	7.48E-03
20	GO:0031012: extracellular matrix	7.96E-03
21	GO:0005794: Golgi apparatus	1.20E-02
22	GO:0005768: endosome	1.88E-02
23	GO:0019898: extrinsic component of membrane	1.96E-02
24	GO:0000145: exocyst	2.15E-02
25	GO:0071944: cell periphery	2.25E-02
26	GO:0009505: plant-type cell wall	3.07E-02
27	GO:0019005: SCF ubiquitin ligase complex	3.23E-02
28	GO:0000151: ubiquitin ligase complex	3.23E-02
29	GO:0005777: peroxisome	3.48E-02
30	GO:0000325: plant-type vacuole	3.58E-02
31	GO:0090406: pollen tube	4.57E-02
32	GO:0005829: cytosol	4.86E-02