GO Enrichment Analysis of Co-expressed Genes with
AT3G08740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 2 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 5 | GO:0042407: cristae formation | 0.00E+00 |
| 6 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 2.85E-08 |
| 8 | GO:0009735: response to cytokinin | 8.54E-07 |
| 9 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.11E-06 |
| 10 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.03E-06 |
| 11 | GO:0042026: protein refolding | 2.12E-05 |
| 12 | GO:0009657: plastid organization | 4.85E-05 |
| 13 | GO:0006783: heme biosynthetic process | 6.04E-05 |
| 14 | GO:0006779: porphyrin-containing compound biosynthetic process | 7.35E-05 |
| 15 | GO:0006436: tryptophanyl-tRNA aminoacylation | 7.75E-05 |
| 16 | GO:0010028: xanthophyll cycle | 7.75E-05 |
| 17 | GO:0042742: defense response to bacterium | 9.99E-05 |
| 18 | GO:0080183: response to photooxidative stress | 1.85E-04 |
| 19 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.85E-04 |
| 20 | GO:0006568: tryptophan metabolic process | 1.85E-04 |
| 21 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.85E-04 |
| 22 | GO:2000071: regulation of defense response by callose deposition | 1.85E-04 |
| 23 | GO:0006457: protein folding | 2.56E-04 |
| 24 | GO:0007005: mitochondrion organization | 3.05E-04 |
| 25 | GO:0071492: cellular response to UV-A | 3.11E-04 |
| 26 | GO:0006760: folic acid-containing compound metabolic process | 3.11E-04 |
| 27 | GO:0006986: response to unfolded protein | 4.49E-04 |
| 28 | GO:0015729: oxaloacetate transport | 4.49E-04 |
| 29 | GO:0006241: CTP biosynthetic process | 4.49E-04 |
| 30 | GO:0006165: nucleoside diphosphate phosphorylation | 4.49E-04 |
| 31 | GO:0006228: UTP biosynthetic process | 4.49E-04 |
| 32 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.49E-04 |
| 33 | GO:0019676: ammonia assimilation cycle | 5.98E-04 |
| 34 | GO:0015743: malate transport | 5.98E-04 |
| 35 | GO:0071486: cellular response to high light intensity | 5.98E-04 |
| 36 | GO:0006183: GTP biosynthetic process | 5.98E-04 |
| 37 | GO:0046656: folic acid biosynthetic process | 5.98E-04 |
| 38 | GO:0071423: malate transmembrane transport | 7.57E-04 |
| 39 | GO:0009627: systemic acquired resistance | 8.88E-04 |
| 40 | GO:0006796: phosphate-containing compound metabolic process | 9.24E-04 |
| 41 | GO:0010190: cytochrome b6f complex assembly | 9.24E-04 |
| 42 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 9.24E-04 |
| 43 | GO:0046654: tetrahydrofolate biosynthetic process | 1.10E-03 |
| 44 | GO:1901259: chloroplast rRNA processing | 1.10E-03 |
| 45 | GO:0006458: 'de novo' protein folding | 1.10E-03 |
| 46 | GO:0017148: negative regulation of translation | 1.10E-03 |
| 47 | GO:0000105: histidine biosynthetic process | 1.48E-03 |
| 48 | GO:0048564: photosystem I assembly | 1.48E-03 |
| 49 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.48E-03 |
| 50 | GO:0032544: plastid translation | 1.69E-03 |
| 51 | GO:0015979: photosynthesis | 1.82E-03 |
| 52 | GO:0098656: anion transmembrane transport | 1.91E-03 |
| 53 | GO:0009245: lipid A biosynthetic process | 1.91E-03 |
| 54 | GO:0043067: regulation of programmed cell death | 2.14E-03 |
| 55 | GO:0031425: chloroplast RNA processing | 2.14E-03 |
| 56 | GO:0045036: protein targeting to chloroplast | 2.37E-03 |
| 57 | GO:0009682: induced systemic resistance | 2.61E-03 |
| 58 | GO:0010020: chloroplast fission | 3.38E-03 |
| 59 | GO:0019253: reductive pentose-phosphate cycle | 3.38E-03 |
| 60 | GO:0006418: tRNA aminoacylation for protein translation | 4.52E-03 |
| 61 | GO:0009790: embryo development | 4.55E-03 |
| 62 | GO:0061077: chaperone-mediated protein folding | 4.82E-03 |
| 63 | GO:0006633: fatty acid biosynthetic process | 4.89E-03 |
| 64 | GO:0006413: translational initiation | 5.01E-03 |
| 65 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 5.13E-03 |
| 66 | GO:0009411: response to UV | 5.45E-03 |
| 67 | GO:0009451: RNA modification | 5.49E-03 |
| 68 | GO:0010118: stomatal movement | 6.44E-03 |
| 69 | GO:0042335: cuticle development | 6.44E-03 |
| 70 | GO:0006662: glycerol ether metabolic process | 6.78E-03 |
| 71 | GO:0010197: polar nucleus fusion | 6.78E-03 |
| 72 | GO:0009741: response to brassinosteroid | 6.78E-03 |
| 73 | GO:0006814: sodium ion transport | 7.13E-03 |
| 74 | GO:0002229: defense response to oomycetes | 7.85E-03 |
| 75 | GO:0009658: chloroplast organization | 8.30E-03 |
| 76 | GO:0010286: heat acclimation | 9.36E-03 |
| 77 | GO:0008219: cell death | 1.22E-02 |
| 78 | GO:0048481: plant ovule development | 1.22E-02 |
| 79 | GO:0006499: N-terminal protein myristoylation | 1.31E-02 |
| 80 | GO:0009867: jasmonic acid mediated signaling pathway | 1.45E-02 |
| 81 | GO:0034599: cellular response to oxidative stress | 1.49E-02 |
| 82 | GO:0042542: response to hydrogen peroxide | 1.68E-02 |
| 83 | GO:0009644: response to high light intensity | 1.83E-02 |
| 84 | GO:0009409: response to cold | 1.87E-02 |
| 85 | GO:0031347: regulation of defense response | 1.98E-02 |
| 86 | GO:0042538: hyperosmotic salinity response | 2.04E-02 |
| 87 | GO:0009585: red, far-red light phototransduction | 2.14E-02 |
| 88 | GO:0006096: glycolytic process | 2.41E-02 |
| 89 | GO:0009620: response to fungus | 2.58E-02 |
| 90 | GO:0009624: response to nematode | 2.75E-02 |
| 91 | GO:0055085: transmembrane transport | 3.44E-02 |
| 92 | GO:0009793: embryo development ending in seed dormancy | 3.64E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0004636: phosphoribosyl-ATP diphosphatase activity | 0.00E+00 |
| 4 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0004635: phosphoribosyl-AMP cyclohydrolase activity | 0.00E+00 |
| 6 | GO:0016851: magnesium chelatase activity | 3.03E-06 |
| 7 | GO:0051087: chaperone binding | 6.41E-06 |
| 8 | GO:0051082: unfolded protein binding | 2.35E-05 |
| 9 | GO:0004830: tryptophan-tRNA ligase activity | 7.75E-05 |
| 10 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 7.75E-05 |
| 11 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 7.75E-05 |
| 12 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 7.75E-05 |
| 13 | GO:0004853: uroporphyrinogen decarboxylase activity | 7.75E-05 |
| 14 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 7.75E-05 |
| 15 | GO:0044183: protein binding involved in protein folding | 1.04E-04 |
| 16 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 1.85E-04 |
| 17 | GO:0004312: fatty acid synthase activity | 1.85E-04 |
| 18 | GO:0004817: cysteine-tRNA ligase activity | 1.85E-04 |
| 19 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.85E-04 |
| 20 | GO:0015367: oxoglutarate:malate antiporter activity | 1.85E-04 |
| 21 | GO:0004150: dihydroneopterin aldolase activity | 1.85E-04 |
| 22 | GO:0004751: ribose-5-phosphate isomerase activity | 3.11E-04 |
| 23 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.11E-04 |
| 24 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 4.49E-04 |
| 25 | GO:0004550: nucleoside diphosphate kinase activity | 4.49E-04 |
| 26 | GO:0043023: ribosomal large subunit binding | 4.49E-04 |
| 27 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.49E-04 |
| 28 | GO:0015131: oxaloacetate transmembrane transporter activity | 4.49E-04 |
| 29 | GO:0004040: amidase activity | 7.57E-04 |
| 30 | GO:0016462: pyrophosphatase activity | 9.24E-04 |
| 31 | GO:0031177: phosphopantetheine binding | 9.24E-04 |
| 32 | GO:0000035: acyl binding | 1.10E-03 |
| 33 | GO:0004427: inorganic diphosphatase activity | 1.29E-03 |
| 34 | GO:0015140: malate transmembrane transporter activity | 1.29E-03 |
| 35 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.48E-03 |
| 36 | GO:0005507: copper ion binding | 1.62E-03 |
| 37 | GO:0042803: protein homodimerization activity | 2.05E-03 |
| 38 | GO:0000049: tRNA binding | 2.86E-03 |
| 39 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.12E-03 |
| 40 | GO:0016887: ATPase activity | 4.37E-03 |
| 41 | GO:0004176: ATP-dependent peptidase activity | 4.82E-03 |
| 42 | GO:0022891: substrate-specific transmembrane transporter activity | 5.45E-03 |
| 43 | GO:0008514: organic anion transmembrane transporter activity | 5.77E-03 |
| 44 | GO:0047134: protein-disulfide reductase activity | 6.10E-03 |
| 45 | GO:0004812: aminoacyl-tRNA ligase activity | 6.10E-03 |
| 46 | GO:0003743: translation initiation factor activity | 6.27E-03 |
| 47 | GO:0004791: thioredoxin-disulfide reductase activity | 7.13E-03 |
| 48 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.59E-03 |
| 49 | GO:0008483: transaminase activity | 9.36E-03 |
| 50 | GO:0008237: metallopeptidase activity | 9.36E-03 |
| 51 | GO:0016168: chlorophyll binding | 1.06E-02 |
| 52 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.22E-02 |
| 53 | GO:0004519: endonuclease activity | 1.66E-02 |
| 54 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.93E-02 |
| 55 | GO:0003723: RNA binding | 2.07E-02 |
| 56 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.47E-02 |
| 57 | GO:0015035: protein disulfide oxidoreductase activity | 2.81E-02 |
| 58 | GO:0003735: structural constituent of ribosome | 3.02E-02 |
| 59 | GO:0030170: pyridoxal phosphate binding | 3.48E-02 |
| 60 | GO:0005524: ATP binding | 3.52E-02 |
| 61 | GO:0042802: identical protein binding | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.19E-45 |
| 2 | GO:0009570: chloroplast stroma | 1.08E-35 |
| 3 | GO:0009941: chloroplast envelope | 1.10E-22 |
| 4 | GO:0009579: thylakoid | 4.58E-13 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.99E-06 |
| 6 | GO:0009536: plastid | 2.12E-06 |
| 7 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 7.75E-05 |
| 8 | GO:0010007: magnesium chelatase complex | 3.11E-04 |
| 9 | GO:0009706: chloroplast inner membrane | 3.43E-04 |
| 10 | GO:0005759: mitochondrial matrix | 6.11E-04 |
| 11 | GO:0010319: stromule | 7.15E-04 |
| 12 | GO:0009295: nucleoid | 7.15E-04 |
| 13 | GO:0022626: cytosolic ribosome | 8.94E-04 |
| 14 | GO:0009539: photosystem II reaction center | 1.69E-03 |
| 15 | GO:0009508: plastid chromosome | 3.12E-03 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 4.52E-03 |
| 17 | GO:0009534: chloroplast thylakoid | 6.60E-03 |
| 18 | GO:0009523: photosystem II | 7.49E-03 |
| 19 | GO:0030529: intracellular ribonucleoprotein complex | 1.02E-02 |
| 20 | GO:0009707: chloroplast outer membrane | 1.22E-02 |
| 21 | GO:0005840: ribosome | 1.35E-02 |
| 22 | GO:0005739: mitochondrion | 2.09E-02 |
| 23 | GO:0009543: chloroplast thylakoid lumen | 3.23E-02 |
| 24 | GO:0005623: cell | 3.29E-02 |