co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0010115: regulation of abscisic acid biosynthetic process	2.86E-06
7	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.89E-05
8	GO:0009913: epidermal cell differentiation	9.94E-05
9	GO:0048443: stamen development	1.45E-04
10	GO:0009416: response to light stimulus	1.68E-04
11	GO:0060627: regulation of vesicle-mediated transport	2.48E-04
12	GO:0006824: cobalt ion transport	2.48E-04
13	GO:0043266: regulation of potassium ion transport	2.48E-04
14	GO:0010480: microsporocyte differentiation	2.48E-04
15	GO:0080051: cutin transport	2.48E-04
16	GO:2000021: regulation of ion homeostasis	2.48E-04
17	GO:0009638: phototropism	4.05E-04
18	GO:0010289: homogalacturonan biosynthetic process	5.49E-04
19	GO:0010198: synergid death	5.49E-04
20	GO:0006695: cholesterol biosynthetic process	5.49E-04
21	GO:0015908: fatty acid transport	5.49E-04
22	GO:0043255: regulation of carbohydrate biosynthetic process	5.49E-04
23	GO:0034755: iron ion transmembrane transport	5.49E-04
24	GO:0045717: negative regulation of fatty acid biosynthetic process	5.49E-04
25	GO:0010541: acropetal auxin transport	5.49E-04
26	GO:0009651: response to salt stress	5.54E-04
27	GO:0010152: pollen maturation	6.25E-04
28	GO:0010540: basipetal auxin transport	7.98E-04
29	GO:1902448: positive regulation of shade avoidance	8.92E-04
30	GO:0009825: multidimensional cell growth	8.92E-04
31	GO:0010160: formation of animal organ boundary	8.92E-04
32	GO:0006833: water transport	9.89E-04
33	GO:0010025: wax biosynthetic process	9.89E-04
34	GO:0016042: lipid catabolic process	1.02E-03
35	GO:0007017: microtubule-based process	1.20E-03
36	GO:0007231: osmosensory signaling pathway	1.27E-03
37	GO:0051639: actin filament network formation	1.27E-03
38	GO:0034059: response to anoxia	1.27E-03
39	GO:0080170: hydrogen peroxide transmembrane transport	1.27E-03
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.27E-03
41	GO:0016998: cell wall macromolecule catabolic process	1.32E-03
42	GO:0010222: stem vascular tissue pattern formation	1.70E-03
43	GO:0051764: actin crosslink formation	1.70E-03
44	GO:0006085: acetyl-CoA biosynthetic process	1.70E-03
45	GO:0006183: GTP biosynthetic process	1.70E-03
46	GO:0033500: carbohydrate homeostasis	1.70E-03
47	GO:0031122: cytoplasmic microtubule organization	1.70E-03
48	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.70E-03
49	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.84E-03
50	GO:0034220: ion transmembrane transport	1.99E-03
51	GO:0005975: carbohydrate metabolic process	2.16E-03
52	GO:0048825: cotyledon development	2.47E-03
53	GO:0071554: cell wall organization or biogenesis	2.64E-03
54	GO:0010405: arabinogalactan protein metabolic process	2.67E-03
55	GO:0006751: glutathione catabolic process	2.67E-03
56	GO:0048827: phyllome development	2.67E-03
57	GO:0042549: photosystem II stabilization	2.67E-03
58	GO:0010256: endomembrane system organization	2.67E-03
59	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.67E-03
60	GO:0060918: auxin transport	2.67E-03
61	GO:0006796: phosphate-containing compound metabolic process	2.67E-03
62	GO:0010337: regulation of salicylic acid metabolic process	2.67E-03
63	GO:0006561: proline biosynthetic process	2.67E-03
64	GO:0071555: cell wall organization	3.00E-03
65	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.21E-03
66	GO:0006694: steroid biosynthetic process	3.21E-03
67	GO:0048437: floral organ development	3.79E-03
68	GO:0007165: signal transduction	4.31E-03
69	GO:0008610: lipid biosynthetic process	4.39E-03
70	GO:0015995: chlorophyll biosynthetic process	4.49E-03
71	GO:0030244: cellulose biosynthetic process	4.97E-03
72	GO:0009808: lignin metabolic process	5.03E-03
73	GO:0008152: metabolic process	5.41E-03
74	GO:0009834: plant-type secondary cell wall biogenesis	5.48E-03
75	GO:0045337: farnesyl diphosphate biosynthetic process	5.70E-03
76	GO:0033384: geranyl diphosphate biosynthetic process	5.70E-03
77	GO:0048589: developmental growth	5.70E-03
78	GO:0016051: carbohydrate biosynthetic process	6.30E-03
79	GO:0006779: porphyrin-containing compound biosynthetic process	6.40E-03
80	GO:0042761: very long-chain fatty acid biosynthetic process	6.40E-03
81	GO:0010215: cellulose microfibril organization	7.12E-03
82	GO:0006782: protoporphyrinogen IX biosynthetic process	7.12E-03
83	GO:0019538: protein metabolic process	7.12E-03
84	GO:0006032: chitin catabolic process	7.12E-03
85	GO:0009688: abscisic acid biosynthetic process	7.12E-03
86	GO:0046856: phosphatidylinositol dephosphorylation	7.88E-03
87	GO:0000038: very long-chain fatty acid metabolic process	7.88E-03
88	GO:0006816: calcium ion transport	7.88E-03
89	GO:1903507: negative regulation of nucleic acid-templated transcription	7.88E-03
90	GO:0009750: response to fructose	7.88E-03
91	GO:0048229: gametophyte development	7.88E-03
92	GO:0008361: regulation of cell size	8.66E-03
93	GO:0012501: programmed cell death	8.66E-03
94	GO:0006820: anion transport	8.66E-03
95	GO:0009718: anthocyanin-containing compound biosynthetic process	9.47E-03
96	GO:0010075: regulation of meristem growth	9.47E-03
97	GO:0009725: response to hormone	9.47E-03
98	GO:0010588: cotyledon vascular tissue pattern formation	9.47E-03
99	GO:0010102: lateral root morphogenesis	9.47E-03
100	GO:0009785: blue light signaling pathway	9.47E-03
101	GO:0030048: actin filament-based movement	9.47E-03
102	GO:0010229: inflorescence development	9.47E-03
103	GO:0009664: plant-type cell wall organization	1.02E-02
104	GO:0042538: hyperosmotic salinity response	1.02E-02
105	GO:0009934: regulation of meristem structural organization	1.03E-02
106	GO:0010143: cutin biosynthetic process	1.03E-02
107	GO:0010053: root epidermal cell differentiation	1.12E-02
108	GO:0010167: response to nitrate	1.12E-02
109	GO:0010030: positive regulation of seed germination	1.12E-02
110	GO:0070588: calcium ion transmembrane transport	1.12E-02
111	GO:0006857: oligopeptide transport	1.18E-02
112	GO:0009733: response to auxin	1.23E-02
113	GO:0007010: cytoskeleton organization	1.30E-02
114	GO:0051017: actin filament bundle assembly	1.30E-02
115	GO:0006468: protein phosphorylation	1.31E-02
116	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.59E-02
117	GO:0016310: phosphorylation	1.72E-02
118	GO:0006284: base-excision repair	1.79E-02
119	GO:0048653: anther development	2.01E-02
120	GO:0042631: cellular response to water deprivation	2.01E-02
121	GO:0042335: cuticle development	2.01E-02
122	GO:0000271: polysaccharide biosynthetic process	2.01E-02
123	GO:0045489: pectin biosynthetic process	2.12E-02
124	GO:0009958: positive gravitropism	2.12E-02
125	GO:0010182: sugar mediated signaling pathway	2.12E-02
126	GO:0016132: brassinosteroid biosynthetic process	2.46E-02
127	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.46E-02
128	GO:0006633: fatty acid biosynthetic process	2.47E-02
129	GO:0016567: protein ubiquitination	2.58E-02
130	GO:0030163: protein catabolic process	2.70E-02
131	GO:0071281: cellular response to iron ion	2.70E-02
132	GO:0009873: ethylene-activated signaling pathway	2.70E-02
133	GO:0045490: pectin catabolic process	2.71E-02
134	GO:0016125: sterol metabolic process	2.82E-02
135	GO:0009639: response to red or far red light	2.82E-02
136	GO:0016126: sterol biosynthetic process	3.19E-02
137	GO:0009911: positive regulation of flower development	3.19E-02
138	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.32E-02
139	GO:0042128: nitrate assimilation	3.46E-02
140	GO:0010411: xyloglucan metabolic process	3.59E-02
141	GO:0010311: lateral root formation	4.00E-02
142	GO:0009826: unidimensional cell growth	4.03E-02
143	GO:0009611: response to wounding	4.11E-02
144	GO:0010218: response to far red light	4.14E-02
145	GO:0048527: lateral root development	4.28E-02
146	GO:0006970: response to osmotic stress	4.50E-02
147	GO:0009637: response to blue light	4.56E-02
148	GO:0007049: cell cycle	4.66E-02
149	GO:0009723: response to ethylene	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0004496: mevalonate kinase activity	0.00E+00
6	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
7	GO:0038198: auxin receptor activity	0.00E+00
8	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
9	GO:0052689: carboxylic ester hydrolase activity	1.44E-05
10	GO:0004565: beta-galactosidase activity	3.56E-05
11	GO:0010011: auxin binding	4.26E-05
12	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.37E-04
13	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	2.48E-04
14	GO:0005227: calcium activated cation channel activity	2.48E-04
15	GO:0008568: microtubule-severing ATPase activity	2.48E-04
16	GO:0015245: fatty acid transporter activity	2.48E-04
17	GO:0016788: hydrolase activity, acting on ester bonds	3.77E-04
18	GO:0003839: gamma-glutamylcyclotransferase activity	5.49E-04
19	GO:0003938: IMP dehydrogenase activity	5.49E-04
20	GO:0000822: inositol hexakisphosphate binding	5.49E-04
21	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.49E-04
22	GO:0004871: signal transducer activity	8.05E-04
23	GO:0030267: glyoxylate reductase (NADP) activity	8.92E-04
24	GO:0005528: FK506 binding	1.09E-03
25	GO:0001872: (1->3)-beta-D-glucan binding	1.27E-03
26	GO:0003878: ATP citrate synthase activity	1.27E-03
27	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.27E-03
28	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.44E-03
29	GO:0016836: hydro-lyase activity	1.70E-03
30	GO:0052793: pectin acetylesterase activity	1.70E-03
31	GO:0008526: phosphatidylinositol transporter activity	1.70E-03
32	GO:0008725: DNA-3-methyladenine glycosylase activity	2.17E-03
33	GO:0008381: mechanically-gated ion channel activity	2.17E-03
34	GO:0019901: protein kinase binding	2.47E-03
35	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.67E-03
36	GO:0035673: oligopeptide transmembrane transporter activity	2.67E-03
37	GO:0042578: phosphoric ester hydrolase activity	2.67E-03
38	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.67E-03
39	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.21E-03
40	GO:0016758: transferase activity, transferring hexosyl groups	3.34E-03
41	GO:0005200: structural constituent of cytoskeleton	3.40E-03
42	GO:0016413: O-acetyltransferase activity	3.60E-03
43	GO:0004427: inorganic diphosphatase activity	3.79E-03
44	GO:0015250: water channel activity	3.81E-03
45	GO:0016829: lyase activity	3.82E-03
46	GO:0004674: protein serine/threonine kinase activity	4.25E-03
47	GO:0030247: polysaccharide binding	4.49E-03
48	GO:0005096: GTPase activator activity	5.22E-03
49	GO:0004337: geranyltranstransferase activity	5.70E-03
50	GO:0005516: calmodulin binding	5.98E-03
51	GO:0005381: iron ion transmembrane transporter activity	6.40E-03
52	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.07E-03
53	GO:0004568: chitinase activity	7.12E-03
54	GO:0005524: ATP binding	7.17E-03
55	GO:0004161: dimethylallyltranstransferase activity	7.88E-03
56	GO:0047372: acylglycerol lipase activity	7.88E-03
57	GO:0015198: oligopeptide transporter activity	8.66E-03
58	GO:0008378: galactosyltransferase activity	8.66E-03
59	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	8.66E-03
60	GO:0005262: calcium channel activity	9.47E-03
61	GO:0010329: auxin efflux transmembrane transporter activity	9.47E-03
62	GO:0004022: alcohol dehydrogenase (NAD) activity	9.47E-03
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.49E-03
64	GO:0016301: kinase activity	9.66E-03
65	GO:0003774: motor activity	1.03E-02
66	GO:0008131: primary amine oxidase activity	1.03E-02
67	GO:0004190: aspartic-type endopeptidase activity	1.12E-02
68	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.21E-02
69	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.21E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.21E-02
71	GO:0003714: transcription corepressor activity	1.30E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.34E-02
73	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.49E-02
74	GO:0004707: MAP kinase activity	1.49E-02
75	GO:0033612: receptor serine/threonine kinase binding	1.49E-02
76	GO:0030570: pectate lyase activity	1.69E-02
77	GO:0003924: GTPase activity	1.96E-02
78	GO:0004872: receptor activity	2.34E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.46E-02
80	GO:0051015: actin filament binding	2.70E-02
81	GO:0005509: calcium ion binding	2.83E-02
82	GO:0008017: microtubule binding	2.84E-02
83	GO:0016597: amino acid binding	3.07E-02
84	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.46E-02
85	GO:0004683: calmodulin-dependent protein kinase activity	3.59E-02
86	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.59E-02
87	GO:0016787: hydrolase activity	3.65E-02
88	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.14E-02
89	GO:0030145: manganese ion binding	4.28E-02
90	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009930: longitudinal side of cell surface	0.00E+00
3	GO:0005886: plasma membrane	4.20E-12
4	GO:0009897: external side of plasma membrane	1.03E-05
5	GO:0009505: plant-type cell wall	1.98E-05
6	GO:0016328: lateral plasma membrane	8.92E-04
7	GO:0015630: microtubule cytoskeleton	1.27E-03
8	GO:0009531: secondary cell wall	1.27E-03
9	GO:0032432: actin filament bundle	1.27E-03
10	GO:0009346: citrate lyase complex	1.27E-03
11	GO:0046658: anchored component of plasma membrane	1.46E-03
12	GO:0031225: anchored component of membrane	1.79E-03
13	GO:0005618: cell wall	2.44E-03
14	GO:0005874: microtubule	2.45E-03
15	GO:0009543: chloroplast thylakoid lumen	3.46E-03
16	GO:0005773: vacuole	5.13E-03
17	GO:0048046: apoplast	5.36E-03
18	GO:0000139: Golgi membrane	5.44E-03
19	GO:0005794: Golgi apparatus	5.49E-03
20	GO:0045298: tubulin complex	5.70E-03
21	GO:0016459: myosin complex	7.12E-03
22	GO:0005887: integral component of plasma membrane	7.42E-03
23	GO:0031977: thylakoid lumen	7.49E-03
24	GO:0005884: actin filament	7.88E-03
25	GO:0030659: cytoplasmic vesicle membrane	1.03E-02
26	GO:0030095: chloroplast photosystem II	1.03E-02
27	GO:0009654: photosystem II oxygen evolving complex	1.39E-02
28	GO:0009534: chloroplast thylakoid	1.48E-02
29	GO:0005770: late endosome	2.12E-02
30	GO:0009506: plasmodesma	2.26E-02
31	GO:0019898: extrinsic component of membrane	2.34E-02
32	GO:0005576: extracellular region	2.61E-02
33	GO:0009705: plant-type vacuole membrane	2.71E-02
34	GO:0005768: endosome	2.73E-02
35	GO:0019005: SCF ubiquitin ligase complex	3.86E-02
36	GO:0000151: ubiquitin ligase complex	3.86E-02
37	GO:0005819: spindle	4.86E-02
38	GO:0009579: thylakoid	4.97E-02