co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
2	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
3	GO:0071482: cellular response to light stimulus	2.72E-05
4	GO:0071461: cellular response to redox state	5.34E-05
5	GO:0060627: regulation of vesicle-mediated transport	5.34E-05
6	GO:0080005: photosystem stoichiometry adjustment	1.30E-04
7	GO:1901562: response to paraquat	2.22E-04
8	GO:2001141: regulation of RNA biosynthetic process	3.25E-04
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.25E-04
10	GO:0009152: purine ribonucleotide biosynthetic process	3.25E-04
11	GO:0046653: tetrahydrofolate metabolic process	3.25E-04
12	GO:0009765: photosynthesis, light harvesting	4.35E-04
13	GO:0010027: thylakoid membrane organization	5.00E-04
14	GO:0009107: lipoate biosynthetic process	5.52E-04
15	GO:0016123: xanthophyll biosynthetic process	5.52E-04
16	GO:0016120: carotene biosynthetic process	5.52E-04
17	GO:0015995: chlorophyll biosynthetic process	5.86E-04
18	GO:0006655: phosphatidylglycerol biosynthetic process	6.76E-04
19	GO:0071470: cellular response to osmotic stress	8.05E-04
20	GO:0015979: photosynthesis	9.86E-04
21	GO:0006629: lipid metabolic process	1.35E-03
22	GO:0006783: heme biosynthetic process	1.38E-03
23	GO:0006779: porphyrin-containing compound biosynthetic process	1.54E-03
24	GO:0006782: protoporphyrinogen IX biosynthetic process	1.71E-03
25	GO:0006352: DNA-templated transcription, initiation	1.88E-03
26	GO:0019684: photosynthesis, light reaction	1.88E-03
27	GO:0016024: CDP-diacylglycerol biosynthetic process	2.06E-03
28	GO:0010207: photosystem II assembly	2.43E-03
29	GO:0071732: cellular response to nitric oxide	2.63E-03
30	GO:0010431: seed maturation	3.46E-03
31	GO:0071369: cellular response to ethylene stimulus	3.90E-03
32	GO:0009306: protein secretion	4.13E-03
33	GO:0016117: carotenoid biosynthetic process	4.36E-03
34	GO:1901657: glycosyl compound metabolic process	6.12E-03
35	GO:0071281: cellular response to iron ion	6.12E-03
36	GO:0010411: xyloglucan metabolic process	8.09E-03
37	GO:0009817: defense response to fungus, incompatible interaction	8.68E-03
38	GO:0009853: photorespiration	1.02E-02
39	GO:0034599: cellular response to oxidative stress	1.06E-02
40	GO:0042546: cell wall biogenesis	1.26E-02
41	GO:0009644: response to high light intensity	1.30E-02
42	GO:0006812: cation transport	1.44E-02
43	GO:0042538: hyperosmotic salinity response	1.44E-02
44	GO:0009416: response to light stimulus	1.66E-02
45	GO:0009058: biosynthetic process	2.37E-02
46	GO:0071555: cell wall organization	3.36E-02
47	GO:0080167: response to karrikin	4.56E-02
48	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0005227: calcium activated cation channel activity	5.34E-05
3	GO:0008883: glutamyl-tRNA reductase activity	1.30E-04
4	GO:0030385: ferredoxin:thioredoxin reductase activity	1.30E-04
5	GO:0030267: glyoxylate reductase (NADP) activity	2.22E-04
6	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.22E-04
7	GO:0008864: formyltetrahydrofolate deformylase activity	2.22E-04
8	GO:0016992: lipoate synthase activity	2.22E-04
9	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.25E-04
10	GO:0016851: magnesium chelatase activity	3.25E-04
11	GO:0001053: plastid sigma factor activity	4.35E-04
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.35E-04
13	GO:0016987: sigma factor activity	4.35E-04
14	GO:0052793: pectin acetylesterase activity	4.35E-04
15	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.76E-04
16	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.05E-04
17	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.38E-03
18	GO:0047372: acylglycerol lipase activity	1.88E-03
19	GO:0004565: beta-galactosidase activity	2.25E-03
20	GO:0005528: FK506 binding	3.03E-03
21	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.60E-03
22	GO:0048038: quinone binding	5.60E-03
23	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.09E-03
24	GO:0102483: scopolin beta-glucosidase activity	8.09E-03
25	GO:0004721: phosphoprotein phosphatase activity	8.09E-03
26	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.68E-03
27	GO:0008422: beta-glucosidase activity	1.09E-02
28	GO:0050661: NADP binding	1.12E-02
29	GO:0051539: 4 iron, 4 sulfur cluster binding	1.12E-02
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.37E-02
31	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.51E-02
32	GO:0003690: double-stranded DNA binding	1.55E-02
33	GO:0045735: nutrient reservoir activity	1.70E-02
34	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.19E-02
35	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.32E-02
36	GO:0008168: methyltransferase activity	3.81E-02
37	GO:0052689: carboxylic ester hydrolase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.23E-08
2	GO:0009543: chloroplast thylakoid lumen	4.27E-07
3	GO:0009535: chloroplast thylakoid membrane	2.92E-05
4	GO:0031977: thylakoid lumen	6.08E-05
5	GO:0010007: magnesium chelatase complex	2.22E-04
6	GO:0031969: chloroplast membrane	8.38E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.38E-03
8	GO:0009570: chloroplast stroma	1.79E-03
9	GO:0009706: chloroplast inner membrane	1.93E-03
10	GO:0043234: protein complex	2.83E-03
11	GO:0009654: photosystem II oxygen evolving complex	3.24E-03
12	GO:0009534: chloroplast thylakoid	3.53E-03
13	GO:0019898: extrinsic component of membrane	5.34E-03
14	GO:0016021: integral component of membrane	1.19E-02
15	GO:0009941: chloroplast envelope	1.36E-02
16	GO:0009579: thylakoid	1.98E-02
17	GO:0010287: plastoglobule	2.19E-02
18	GO:0031225: anchored component of membrane	2.59E-02