co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0006000: fructose metabolic process	6.66E-06
7	GO:0015994: chlorophyll metabolic process	2.82E-05
8	GO:1902183: regulation of shoot apical meristem development	4.56E-05
9	GO:0010158: abaxial cell fate specification	4.56E-05
10	GO:0009644: response to high light intensity	8.79E-05
11	GO:0010480: microsporocyte differentiation	1.95E-04
12	GO:0031338: regulation of vesicle fusion	1.95E-04
13	GO:0000481: maturation of 5S rRNA	1.95E-04
14	GO:0043609: regulation of carbon utilization	1.95E-04
15	GO:0010028: xanthophyll cycle	1.95E-04
16	GO:0034337: RNA folding	1.95E-04
17	GO:0010450: inflorescence meristem growth	1.95E-04
18	GO:0010493: Lewis a epitope biosynthetic process	1.95E-04
19	GO:0006002: fructose 6-phosphate metabolic process	1.98E-04
20	GO:2000024: regulation of leaf development	2.40E-04
21	GO:0009773: photosynthetic electron transport in photosystem I	3.91E-04
22	GO:1900871: chloroplast mRNA modification	4.38E-04
23	GO:0042325: regulation of phosphorylation	4.38E-04
24	GO:0016122: xanthophyll metabolic process	4.38E-04
25	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.38E-04
26	GO:0009718: anthocyanin-containing compound biosynthetic process	5.09E-04
27	GO:0006094: gluconeogenesis	5.09E-04
28	GO:0006013: mannose metabolic process	7.14E-04
29	GO:0006518: peptide metabolic process	7.14E-04
30	GO:0043617: cellular response to sucrose starvation	7.14E-04
31	GO:0090630: activation of GTPase activity	7.14E-04
32	GO:0045165: cell fate commitment	7.14E-04
33	GO:0009944: polarity specification of adaxial/abaxial axis	7.89E-04
34	GO:1901332: negative regulation of lateral root development	1.02E-03
35	GO:0046836: glycolipid transport	1.02E-03
36	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.02E-03
37	GO:0071484: cellular response to light intensity	1.02E-03
38	GO:0080170: hydrogen peroxide transmembrane transport	1.02E-03
39	GO:0010023: proanthocyanidin biosynthetic process	1.35E-03
40	GO:0045727: positive regulation of translation	1.35E-03
41	GO:0009723: response to ethylene	1.37E-03
42	GO:0010154: fruit development	1.53E-03
43	GO:0010117: photoprotection	1.72E-03
44	GO:0000741: karyogamy	2.12E-03
45	GO:1902456: regulation of stomatal opening	2.12E-03
46	GO:0042549: photosystem II stabilization	2.12E-03
47	GO:0048280: vesicle fusion with Golgi apparatus	2.54E-03
48	GO:0048437: floral organ development	3.00E-03
49	GO:1900057: positive regulation of leaf senescence	3.00E-03
50	GO:0009645: response to low light intensity stimulus	3.00E-03
51	GO:0009772: photosynthetic electron transport in photosystem II	3.00E-03
52	GO:0015995: chlorophyll biosynthetic process	3.19E-03
53	GO:0008152: metabolic process	3.20E-03
54	GO:0032508: DNA duplex unwinding	3.47E-03
55	GO:0010492: maintenance of shoot apical meristem identity	3.47E-03
56	GO:0018298: protein-chromophore linkage	3.53E-03
57	GO:0032544: plastid translation	3.97E-03
58	GO:0010093: specification of floral organ identity	3.97E-03
59	GO:0048507: meristem development	4.49E-03
60	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.49E-03
61	GO:0000373: Group II intron splicing	4.49E-03
62	GO:0048589: developmental growth	4.49E-03
63	GO:0009051: pentose-phosphate shunt, oxidative branch	4.49E-03
64	GO:0006779: porphyrin-containing compound biosynthetic process	5.04E-03
65	GO:0006896: Golgi to vacuole transport	5.61E-03
66	GO:0006782: protoporphyrinogen IX biosynthetic process	5.61E-03
67	GO:0008285: negative regulation of cell proliferation	6.20E-03
68	GO:0009750: response to fructose	6.20E-03
69	GO:0048229: gametophyte development	6.20E-03
70	GO:0009416: response to light stimulus	6.59E-03
71	GO:0005983: starch catabolic process	6.81E-03
72	GO:0010152: pollen maturation	6.81E-03
73	GO:0006006: glucose metabolic process	7.44E-03
74	GO:0018107: peptidyl-threonine phosphorylation	7.44E-03
75	GO:0010075: regulation of meristem growth	7.44E-03
76	GO:0009767: photosynthetic electron transport chain	7.44E-03
77	GO:0005986: sucrose biosynthetic process	7.44E-03
78	GO:0006364: rRNA processing	7.75E-03
79	GO:0009933: meristem structural organization	8.10E-03
80	GO:0009934: regulation of meristem structural organization	8.10E-03
81	GO:0010030: positive regulation of seed germination	8.77E-03
82	GO:0042343: indole glucosinolate metabolic process	8.77E-03
83	GO:0015979: photosynthesis	9.11E-03
84	GO:0006833: water transport	9.46E-03
85	GO:0006289: nucleotide-excision repair	1.02E-02
86	GO:0009768: photosynthesis, light harvesting in photosystem I	1.09E-02
87	GO:0098542: defense response to other organism	1.17E-02
88	GO:0061077: chaperone-mediated protein folding	1.17E-02
89	GO:0080092: regulation of pollen tube growth	1.24E-02
90	GO:0009753: response to jasmonic acid	1.38E-02
91	GO:0048443: stamen development	1.40E-02
92	GO:0042147: retrograde transport, endosome to Golgi	1.48E-02
93	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.48E-02
94	GO:0034220: ion transmembrane transport	1.57E-02
95	GO:0048653: anther development	1.57E-02
96	GO:0042631: cellular response to water deprivation	1.57E-02
97	GO:0010197: polar nucleus fusion	1.65E-02
98	GO:0009646: response to absence of light	1.74E-02
99	GO:0006623: protein targeting to vacuole	1.83E-02
100	GO:0006891: intra-Golgi vesicle-mediated transport	1.92E-02
101	GO:0007165: signal transduction	1.95E-02
102	GO:0016032: viral process	2.01E-02
103	GO:0009737: response to abscisic acid	2.02E-02
104	GO:0071281: cellular response to iron ion	2.11E-02
105	GO:0009739: response to gibberellin	2.15E-02
106	GO:0009733: response to auxin	2.27E-02
107	GO:0071805: potassium ion transmembrane transport	2.30E-02
108	GO:0042128: nitrate assimilation	2.70E-02
109	GO:0006888: ER to Golgi vesicle-mediated transport	2.80E-02
110	GO:0016311: dephosphorylation	2.91E-02
111	GO:0009817: defense response to fungus, incompatible interaction	3.02E-02
112	GO:0042254: ribosome biogenesis	3.03E-02
113	GO:0010311: lateral root formation	3.12E-02
114	GO:0006499: N-terminal protein myristoylation	3.23E-02
115	GO:0006810: transport	3.36E-02
116	GO:0005975: carbohydrate metabolic process	3.53E-02
117	GO:0009853: photorespiration	3.57E-02
118	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.80E-02
119	GO:0046777: protein autophosphorylation	3.93E-02
120	GO:0006631: fatty acid metabolic process	4.03E-02
121	GO:0009744: response to sucrose	4.27E-02
122	GO:0045892: negative regulation of transcription, DNA-templated	4.46E-02
123	GO:0006855: drug transmembrane transport	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
7	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
8	GO:0005528: FK506 binding	1.02E-06
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.01E-04
10	GO:0016787: hydrolase activity	1.83E-04
11	GO:0046920: alpha-(1->3)-fucosyltransferase activity	1.95E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	1.95E-04
13	GO:0047746: chlorophyllase activity	4.38E-04
14	GO:0016868: intramolecular transferase activity, phosphotransferases	4.38E-04
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.38E-04
16	GO:0004148: dihydrolipoyl dehydrogenase activity	7.14E-04
17	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	7.14E-04
18	GO:0001872: (1->3)-beta-D-glucan binding	1.02E-03
19	GO:0017089: glycolipid transporter activity	1.02E-03
20	GO:0019201: nucleotide kinase activity	1.02E-03
21	GO:0070628: proteasome binding	1.35E-03
22	GO:0010011: auxin binding	1.35E-03
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.35E-03
24	GO:0051861: glycolipid binding	1.35E-03
25	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.35E-03
26	GO:0008453: alanine-glyoxylate transaminase activity	1.35E-03
27	GO:0017137: Rab GTPase binding	1.72E-03
28	GO:0042578: phosphoric ester hydrolase activity	2.12E-03
29	GO:0031593: polyubiquitin binding	2.12E-03
30	GO:2001070: starch binding	2.12E-03
31	GO:0004332: fructose-bisphosphate aldolase activity	2.12E-03
32	GO:0004017: adenylate kinase activity	2.54E-03
33	GO:0004559: alpha-mannosidase activity	2.54E-03
34	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.54E-03
35	GO:0016168: chlorophyll binding	2.87E-03
36	GO:0043022: ribosome binding	3.47E-03
37	GO:0005096: GTPase activator activity	3.71E-03
38	GO:0008417: fucosyltransferase activity	4.49E-03
39	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.20E-03
40	GO:0004565: beta-galactosidase activity	7.44E-03
41	GO:0008081: phosphoric diester hydrolase activity	7.44E-03
42	GO:0019888: protein phosphatase regulator activity	7.44E-03
43	GO:0008266: poly(U) RNA binding	8.10E-03
44	GO:0031409: pigment binding	9.46E-03
45	GO:0043130: ubiquitin binding	1.02E-02
46	GO:0015079: potassium ion transmembrane transporter activity	1.09E-02
47	GO:0033612: receptor serine/threonine kinase binding	1.17E-02
48	GO:0022891: substrate-specific transmembrane transporter activity	1.32E-02
49	GO:0050662: coenzyme binding	1.74E-02
50	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.79E-02
51	GO:0048038: quinone binding	1.92E-02
52	GO:0004518: nuclease activity	2.01E-02
53	GO:0003684: damaged DNA binding	2.20E-02
54	GO:0008483: transaminase activity	2.30E-02
55	GO:0015250: water channel activity	2.50E-02
56	GO:0030247: polysaccharide binding	2.80E-02
57	GO:0005515: protein binding	2.99E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	3.03E-02
59	GO:0015238: drug transmembrane transporter activity	3.12E-02
60	GO:0004222: metalloendopeptidase activity	3.23E-02
61	GO:0050897: cobalt ion binding	3.34E-02
62	GO:0003746: translation elongation factor activity	3.57E-02
63	GO:0000149: SNARE binding	3.80E-02
64	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.80E-02
65	GO:0050661: NADP binding	3.92E-02
66	GO:0052689: carboxylic ester hydrolase activity	4.06E-02
67	GO:0005484: SNAP receptor activity	4.27E-02
68	GO:0004185: serine-type carboxypeptidase activity	4.27E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	4.52E-02
70	GO:0004871: signal transducer activity	4.60E-02
71	GO:0015293: symporter activity	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0009534: chloroplast thylakoid	2.11E-13
4	GO:0009543: chloroplast thylakoid lumen	1.54E-10
5	GO:0009535: chloroplast thylakoid membrane	2.04E-09
6	GO:0009507: chloroplast	1.31E-08
7	GO:0009579: thylakoid	1.08E-04
8	GO:0009570: chloroplast stroma	1.58E-04
9	GO:0009344: nitrite reductase complex [NAD(P)H]	1.95E-04
10	GO:0009782: photosystem I antenna complex	1.95E-04
11	GO:0030095: chloroplast photosystem II	5.74E-04
12	GO:0009531: secondary cell wall	1.02E-03
13	GO:0010287: plastoglobule	2.09E-03
14	GO:0012507: ER to Golgi transport vesicle membrane	3.47E-03
15	GO:0009941: chloroplast envelope	4.30E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.49E-03
17	GO:0008180: COP9 signalosome	4.49E-03
18	GO:0031977: thylakoid lumen	5.31E-03
19	GO:0000159: protein phosphatase type 2A complex	6.20E-03
20	GO:0032040: small-subunit processome	6.81E-03
21	GO:0030076: light-harvesting complex	8.77E-03
22	GO:0042651: thylakoid membrane	1.09E-02
23	GO:0009654: photosystem II oxygen evolving complex	1.09E-02
24	GO:0005886: plasma membrane	1.16E-02
25	GO:0005759: mitochondrial matrix	1.75E-02
26	GO:0009523: photosystem II	1.83E-02
27	GO:0019898: extrinsic component of membrane	1.83E-02
28	GO:0032580: Golgi cisterna membrane	2.20E-02
29	GO:0030529: intracellular ribonucleoprotein complex	2.50E-02
30	GO:0046658: anchored component of plasma membrane	2.54E-02
31	GO:0009505: plant-type cell wall	2.67E-02
32	GO:0019005: SCF ubiquitin ligase complex	3.02E-02
33	GO:0005773: vacuole	3.78E-02
34	GO:0031902: late endosome membrane	4.03E-02
35	GO:0031201: SNARE complex	4.03E-02
36	GO:0009506: plasmodesma	4.46E-02
37	GO:0048046: apoplast	4.90E-02