co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G07540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
3	GO:0051493: regulation of cytoskeleton organization	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
8	GO:0090627: plant epidermal cell differentiation	0.00E+00
9	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
10	GO:0080170: hydrogen peroxide transmembrane transport	1.87E-05
11	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	3.41E-05
12	GO:0006833: water transport	4.66E-05
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.20E-05
14	GO:0009913: epidermal cell differentiation	8.04E-05
15	GO:0034220: ion transmembrane transport	1.40E-04
16	GO:0008610: lipid biosynthetic process	1.88E-04
17	GO:0010480: microsporocyte differentiation	2.18E-04
18	GO:0031338: regulation of vesicle fusion	2.18E-04
19	GO:0080051: cutin transport	2.18E-04
20	GO:2000021: regulation of ion homeostasis	2.18E-04
21	GO:0006824: cobalt ion transport	2.18E-04
22	GO:0043266: regulation of potassium ion transport	2.18E-04
23	GO:0010442: guard cell morphogenesis	2.18E-04
24	GO:0010027: thylakoid membrane organization	3.47E-04
25	GO:0015995: chlorophyll biosynthetic process	4.29E-04
26	GO:0010289: homogalacturonan biosynthetic process	4.86E-04
27	GO:0052541: plant-type cell wall cellulose metabolic process	4.86E-04
28	GO:0010198: synergid death	4.86E-04
29	GO:0015908: fatty acid transport	4.86E-04
30	GO:0034755: iron ion transmembrane transport	4.86E-04
31	GO:0010115: regulation of abscisic acid biosynthetic process	4.86E-04
32	GO:0045717: negative regulation of fatty acid biosynthetic process	4.86E-04
33	GO:0010541: acropetal auxin transport	4.86E-04
34	GO:0010623: programmed cell death involved in cell development	7.90E-04
35	GO:0090630: activation of GTPase activity	7.90E-04
36	GO:2001295: malonyl-CoA biosynthetic process	7.90E-04
37	GO:0010160: formation of animal organ boundary	7.90E-04
38	GO:0055070: copper ion homeostasis	1.13E-03
39	GO:0007231: osmosensory signaling pathway	1.13E-03
40	GO:0051639: actin filament network formation	1.13E-03
41	GO:0034059: response to anoxia	1.13E-03
42	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.13E-03
43	GO:0006468: protein phosphorylation	1.28E-03
44	GO:0048443: stamen development	1.42E-03
45	GO:0010021: amylopectin biosynthetic process	1.50E-03
46	GO:0010222: stem vascular tissue pattern formation	1.50E-03
47	GO:0051764: actin crosslink formation	1.50E-03
48	GO:0033500: carbohydrate homeostasis	1.50E-03
49	GO:0031122: cytoplasmic microtubule organization	1.50E-03
50	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.54E-03
51	GO:0009958: positive gravitropism	1.78E-03
52	GO:0035434: copper ion transmembrane transport	1.91E-03
53	GO:0000304: response to singlet oxygen	1.91E-03
54	GO:0009416: response to light stimulus	2.10E-03
55	GO:0071554: cell wall organization or biogenesis	2.20E-03
56	GO:0010405: arabinogalactan protein metabolic process	2.35E-03
57	GO:0006751: glutathione catabolic process	2.35E-03
58	GO:0042549: photosystem II stabilization	2.35E-03
59	GO:0010256: endomembrane system organization	2.35E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.35E-03
61	GO:0006655: phosphatidylglycerol biosynthetic process	2.35E-03
62	GO:0060918: auxin transport	2.35E-03
63	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.35E-03
64	GO:0006796: phosphate-containing compound metabolic process	2.35E-03
65	GO:0009651: response to salt stress	2.82E-03
66	GO:0006694: steroid biosynthetic process	2.83E-03
67	GO:0048280: vesicle fusion with Golgi apparatus	2.83E-03
68	GO:0016126: sterol biosynthetic process	3.17E-03
69	GO:0051510: regulation of unidimensional cell growth	3.33E-03
70	GO:0098869: cellular oxidant detoxification	3.33E-03
71	GO:0048437: floral organ development	3.33E-03
72	GO:0016042: lipid catabolic process	3.35E-03
73	GO:0006633: fatty acid biosynthetic process	3.64E-03
74	GO:0010928: regulation of auxin mediated signaling pathway	3.86E-03
75	GO:0009808: lignin metabolic process	4.42E-03
76	GO:0071482: cellular response to light stimulus	4.42E-03
77	GO:0009834: plant-type secondary cell wall biogenesis	4.55E-03
78	GO:0048589: developmental growth	5.00E-03
79	GO:0016051: carbohydrate biosynthetic process	5.22E-03
80	GO:0009638: phototropism	5.62E-03
81	GO:0006779: porphyrin-containing compound biosynthetic process	5.62E-03
82	GO:0030001: metal ion transport	5.95E-03
83	GO:0010215: cellulose microfibril organization	6.25E-03
84	GO:0006896: Golgi to vacuole transport	6.25E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	6.25E-03
86	GO:0019538: protein metabolic process	6.25E-03
87	GO:0009826: unidimensional cell growth	6.81E-03
88	GO:0048229: gametophyte development	6.91E-03
89	GO:0046856: phosphatidylinositol dephosphorylation	6.91E-03
90	GO:0000038: very long-chain fatty acid metabolic process	6.91E-03
91	GO:0006816: calcium ion transport	6.91E-03
92	GO:0009807: lignan biosynthetic process	6.91E-03
93	GO:0009073: aromatic amino acid family biosynthetic process	6.91E-03
94	GO:1903507: negative regulation of nucleic acid-templated transcription	6.91E-03
95	GO:0008361: regulation of cell size	7.60E-03
96	GO:0006820: anion transport	7.60E-03
97	GO:0016024: CDP-diacylglycerol biosynthetic process	7.60E-03
98	GO:0010152: pollen maturation	7.60E-03
99	GO:0009718: anthocyanin-containing compound biosynthetic process	8.30E-03
100	GO:0010075: regulation of meristem growth	8.30E-03
101	GO:0009725: response to hormone	8.30E-03
102	GO:0009767: photosynthetic electron transport chain	8.30E-03
103	GO:0010588: cotyledon vascular tissue pattern formation	8.30E-03
104	GO:0010102: lateral root morphogenesis	8.30E-03
105	GO:0009785: blue light signaling pathway	8.30E-03
106	GO:0007165: signal transduction	8.70E-03
107	GO:0010540: basipetal auxin transport	9.03E-03
108	GO:0009934: regulation of meristem structural organization	9.03E-03
109	GO:0010143: cutin biosynthetic process	9.03E-03
110	GO:0010030: positive regulation of seed germination	9.79E-03
111	GO:0070588: calcium ion transmembrane transport	9.79E-03
112	GO:0009825: multidimensional cell growth	9.79E-03
113	GO:0046777: protein autophosphorylation	1.02E-02
114	GO:0006071: glycerol metabolic process	1.06E-02
115	GO:0051017: actin filament bundle assembly	1.14E-02
116	GO:0016310: phosphorylation	1.19E-02
117	GO:0055085: transmembrane transport	1.20E-02
118	GO:0008299: isoprenoid biosynthetic process	1.22E-02
119	GO:0010026: trichome differentiation	1.22E-02
120	GO:0007017: microtubule-based process	1.22E-02
121	GO:0031408: oxylipin biosynthetic process	1.30E-02
122	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.39E-02
123	GO:0009306: protein secretion	1.57E-02
124	GO:0042147: retrograde transport, endosome to Golgi	1.66E-02
125	GO:0048653: anther development	1.75E-02
126	GO:0042631: cellular response to water deprivation	1.75E-02
127	GO:0042335: cuticle development	1.75E-02
128	GO:0009741: response to brassinosteroid	1.85E-02
129	GO:0042744: hydrogen peroxide catabolic process	1.85E-02
130	GO:0008360: regulation of cell shape	1.85E-02
131	GO:0019252: starch biosynthetic process	2.05E-02
132	GO:0006623: protein targeting to vacuole	2.05E-02
133	GO:0009791: post-embryonic development	2.05E-02
134	GO:0048825: cotyledon development	2.05E-02
135	GO:0016132: brassinosteroid biosynthetic process	2.15E-02
136	GO:0006891: intra-Golgi vesicle-mediated transport	2.15E-02
137	GO:0007264: small GTPase mediated signal transduction	2.25E-02
138	GO:0010583: response to cyclopentenone	2.25E-02
139	GO:0016125: sterol metabolic process	2.46E-02
140	GO:0009639: response to red or far red light	2.46E-02
141	GO:0051607: defense response to virus	2.68E-02
142	GO:0009733: response to auxin	2.86E-02
143	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.91E-02
144	GO:0042128: nitrate assimilation	3.02E-02
145	GO:0006888: ER to Golgi vesicle-mediated transport	3.14E-02
146	GO:0009611: response to wounding	3.26E-02
147	GO:0030244: cellulose biosynthetic process	3.37E-02
148	GO:0048767: root hair elongation	3.49E-02
149	GO:0010218: response to far red light	3.62E-02
150	GO:0048527: lateral root development	3.74E-02
151	GO:0006970: response to osmotic stress	3.74E-02
152	GO:0009637: response to blue light	3.99E-02
153	GO:0009723: response to ethylene	4.01E-02
154	GO:0006810: transport	4.22E-02
155	GO:0009926: auxin polar transport	4.78E-02
156	GO:0009744: response to sucrose	4.78E-02
157	GO:0009640: photomorphogenesis	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0004496: mevalonate kinase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.11E-04
8	GO:0004163: diphosphomevalonate decarboxylase activity	2.18E-04
9	GO:0015245: fatty acid transporter activity	2.18E-04
10	GO:0005227: calcium activated cation channel activity	2.18E-04
11	GO:0008568: microtubule-severing ATPase activity	2.18E-04
12	GO:0015250: water channel activity	3.47E-04
13	GO:0005524: ATP binding	4.13E-04
14	GO:0016301: kinase activity	4.34E-04
15	GO:0052689: carboxylic ester hydrolase activity	4.60E-04
16	GO:0010283: pinoresinol reductase activity	4.86E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	4.86E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	4.86E-04
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.86E-04
20	GO:0004565: beta-galactosidase activity	5.92E-04
21	GO:0004075: biotin carboxylase activity	7.90E-04
22	GO:0030267: glyoxylate reductase (NADP) activity	7.90E-04
23	GO:0070402: NADPH binding	7.90E-04
24	GO:0016531: copper chaperone activity	7.90E-04
25	GO:0004373: glycogen (starch) synthase activity	7.90E-04
26	GO:0019829: cation-transporting ATPase activity	7.90E-04
27	GO:0005528: FK506 binding	9.15E-04
28	GO:0004674: protein serine/threonine kinase activity	9.48E-04
29	GO:0001872: (1->3)-beta-D-glucan binding	1.13E-03
30	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.13E-03
31	GO:0016788: hydrolase activity, acting on ester bonds	1.43E-03
32	GO:0010011: auxin binding	1.50E-03
33	GO:0016836: hydro-lyase activity	1.50E-03
34	GO:0052793: pectin acetylesterase activity	1.50E-03
35	GO:0009011: starch synthase activity	1.50E-03
36	GO:0008526: phosphatidylinositol transporter activity	1.50E-03
37	GO:0003989: acetyl-CoA carboxylase activity	1.91E-03
38	GO:0008381: mechanically-gated ion channel activity	1.91E-03
39	GO:0017137: Rab GTPase binding	1.91E-03
40	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.35E-03
41	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.35E-03
42	GO:0042578: phosphoric ester hydrolase activity	2.35E-03
43	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.35E-03
44	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.83E-03
45	GO:0016413: O-acetyltransferase activity	2.99E-03
46	GO:0004427: inorganic diphosphatase activity	3.33E-03
47	GO:0005516: calmodulin binding	4.30E-03
48	GO:0005096: GTPase activator activity	4.33E-03
49	GO:0005375: copper ion transmembrane transporter activity	4.42E-03
50	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.00E-03
51	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	5.56E-03
52	GO:0005381: iron ion transmembrane transporter activity	5.62E-03
53	GO:0015020: glucuronosyltransferase activity	6.25E-03
54	GO:0047372: acylglycerol lipase activity	6.91E-03
55	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.91E-03
56	GO:0008378: galactosyltransferase activity	7.60E-03
57	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.60E-03
58	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.86E-03
59	GO:0005262: calcium channel activity	8.30E-03
60	GO:0010329: auxin efflux transmembrane transporter activity	8.30E-03
61	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.30E-03
62	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.06E-02
63	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.06E-02
64	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.06E-02
65	GO:0003714: transcription corepressor activity	1.14E-02
66	GO:0008324: cation transmembrane transporter activity	1.22E-02
67	GO:0004871: signal transducer activity	1.25E-02
68	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.30E-02
69	GO:0004707: MAP kinase activity	1.30E-02
70	GO:0033612: receptor serine/threonine kinase binding	1.30E-02
71	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.39E-02
72	GO:0004672: protein kinase activity	1.40E-02
73	GO:0016758: transferase activity, transferring hexosyl groups	1.58E-02
74	GO:0016853: isomerase activity	1.95E-02
75	GO:0004872: receptor activity	2.05E-02
76	GO:0004197: cysteine-type endopeptidase activity	2.25E-02
77	GO:0051015: actin filament binding	2.36E-02
78	GO:0005200: structural constituent of cytoskeleton	2.57E-02
79	GO:0016787: hydrolase activity	2.67E-02
80	GO:0016597: amino acid binding	2.68E-02
81	GO:0005215: transporter activity	2.80E-02
82	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.02E-02
83	GO:0008375: acetylglucosaminyltransferase activity	3.02E-02
84	GO:0004683: calmodulin-dependent protein kinase activity	3.14E-02
85	GO:0030247: polysaccharide binding	3.14E-02
86	GO:0004721: phosphoprotein phosphatase activity	3.14E-02
87	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.37E-02
88	GO:0004601: peroxidase activity	3.47E-02
89	GO:0030145: manganese ion binding	3.74E-02
90	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.74E-02
91	GO:0000149: SNARE binding	4.25E-02
92	GO:0005484: SNAP receptor activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009930: longitudinal side of cell surface	0.00E+00
3	GO:0070971: endoplasmic reticulum exit site	0.00E+00
4	GO:0005886: plasma membrane	4.29E-12
5	GO:0009897: external side of plasma membrane	8.14E-06
6	GO:0009505: plant-type cell wall	9.14E-06
7	GO:0046658: anchored component of plasma membrane	1.88E-04
8	GO:0009570: chloroplast stroma	2.82E-04
9	GO:0009506: plasmodesma	4.48E-04
10	GO:0016328: lateral plasma membrane	7.90E-04
11	GO:0016021: integral component of membrane	8.68E-04
12	GO:0032432: actin filament bundle	1.13E-03
13	GO:0031225: anchored component of membrane	1.23E-03
14	GO:0009507: chloroplast	1.28E-03
15	GO:0009534: chloroplast thylakoid	2.92E-03
16	GO:0005794: Golgi apparatus	2.95E-03
17	GO:0012507: ER to Golgi transport vesicle membrane	3.86E-03
18	GO:0009501: amyloplast	3.86E-03
19	GO:0045298: tubulin complex	5.00E-03
20	GO:0005887: integral component of plasma membrane	5.57E-03
21	GO:0005884: actin filament	6.91E-03
22	GO:0005764: lysosome	9.03E-03
23	GO:0030659: cytoplasmic vesicle membrane	9.03E-03
24	GO:0043234: protein complex	1.06E-02
25	GO:0000139: Golgi membrane	1.22E-02
26	GO:0009543: chloroplast thylakoid lumen	1.62E-02
27	GO:0019898: extrinsic component of membrane	2.05E-02
28	GO:0009705: plant-type vacuole membrane	2.25E-02
29	GO:0016020: membrane	2.44E-02
30	GO:0005618: cell wall	2.96E-02
31	GO:0009941: chloroplast envelope	4.04E-02
32	GO:0031969: chloroplast membrane	4.30E-02
33	GO:0031201: SNARE complex	4.51E-02
34	GO:0031902: late endosome membrane	4.51E-02
35	GO:0031977: thylakoid lumen	4.51E-02