co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0006482: protein demethylation	0.00E+00
3	GO:0010111: glyoxysome organization	0.00E+00
4	GO:0060154: cellular process regulating host cell cycle in response to virus	0.00E+00
5	GO:0019320: hexose catabolic process	0.00E+00
6	GO:0048227: plasma membrane to endosome transport	0.00E+00
7	GO:0045022: early endosome to late endosome transport	0.00E+00
8	GO:0030163: protein catabolic process	2.43E-05
9	GO:0055114: oxidation-reduction process	5.15E-05
10	GO:0006144: purine nucleobase metabolic process	6.91E-05
11	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	6.91E-05
12	GO:0098702: adenine import across plasma membrane	6.91E-05
13	GO:0048455: stamen formation	6.91E-05
14	GO:0098710: guanine import across plasma membrane	6.91E-05
15	GO:0019628: urate catabolic process	6.91E-05
16	GO:0000303: response to superoxide	6.91E-05
17	GO:0080173: male-female gamete recognition during double fertilization	6.91E-05
18	GO:0035344: hypoxanthine transport	6.91E-05
19	GO:0034214: protein hexamerization	6.91E-05
20	GO:0010265: SCF complex assembly	6.91E-05
21	GO:0098721: uracil import across plasma membrane	6.91E-05
22	GO:0012501: programmed cell death	1.03E-04
23	GO:1990069: stomatal opening	1.66E-04
24	GO:0009156: ribonucleoside monophosphate biosynthetic process	1.66E-04
25	GO:0019395: fatty acid oxidation	1.66E-04
26	GO:1905182: positive regulation of urease activity	1.66E-04
27	GO:0019521: D-gluconate metabolic process	1.66E-04
28	GO:0006212: uracil catabolic process	1.66E-04
29	GO:0019374: galactolipid metabolic process	1.66E-04
30	GO:0051788: response to misfolded protein	1.66E-04
31	GO:0019483: beta-alanine biosynthetic process	1.66E-04
32	GO:0051603: proteolysis involved in cellular protein catabolic process	1.82E-04
33	GO:0043617: cellular response to sucrose starvation	2.81E-04
34	GO:0006624: vacuolar protein processing	4.06E-04
35	GO:0006809: nitric oxide biosynthetic process	4.06E-04
36	GO:0010148: transpiration	4.06E-04
37	GO:0010255: glucose mediated signaling pathway	4.06E-04
38	GO:0009165: nucleotide biosynthetic process	5.42E-04
39	GO:0006542: glutamine biosynthetic process	5.42E-04
40	GO:0010363: regulation of plant-type hypersensitive response	5.42E-04
41	GO:0006464: cellular protein modification process	5.83E-04
42	GO:0006090: pyruvate metabolic process	6.87E-04
43	GO:0098719: sodium ion import across plasma membrane	6.87E-04
44	GO:0043248: proteasome assembly	8.40E-04
45	GO:0009651: response to salt stress	9.51E-04
46	GO:0000911: cytokinesis by cell plate formation	9.99E-04
47	GO:0046835: carbohydrate phosphorylation	9.99E-04
48	GO:0010189: vitamin E biosynthetic process	9.99E-04
49	GO:0010043: response to zinc ion	1.02E-03
50	GO:0009867: jasmonic acid mediated signaling pathway	1.12E-03
51	GO:0009610: response to symbiotic fungus	1.17E-03
52	GO:0048528: post-embryonic root development	1.17E-03
53	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.17E-03
54	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.17E-03
55	GO:0006511: ubiquitin-dependent protein catabolic process	1.20E-03
56	GO:0006102: isocitrate metabolic process	1.34E-03
57	GO:0006644: phospholipid metabolic process	1.34E-03
58	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.34E-03
59	GO:0009744: response to sucrose	1.42E-03
60	GO:0043562: cellular response to nitrogen levels	1.53E-03
61	GO:0006972: hyperosmotic response	1.53E-03
62	GO:0000373: Group II intron splicing	1.73E-03
63	GO:0009051: pentose-phosphate shunt, oxidative branch	1.73E-03
64	GO:0006098: pentose-phosphate shunt	1.73E-03
65	GO:0006754: ATP biosynthetic process	1.73E-03
66	GO:0009809: lignin biosynthetic process	1.90E-03
67	GO:0051453: regulation of intracellular pH	1.93E-03
68	GO:0090332: stomatal closure	1.93E-03
69	GO:0019538: protein metabolic process	2.14E-03
70	GO:0006378: mRNA polyadenylation	2.36E-03
71	GO:0043085: positive regulation of catalytic activity	2.36E-03
72	GO:0010102: lateral root morphogenesis	2.82E-03
73	GO:0006807: nitrogen compound metabolic process	2.82E-03
74	GO:0006006: glucose metabolic process	2.82E-03
75	GO:0007034: vacuolar transport	3.06E-03
76	GO:0007031: peroxisome organization	3.30E-03
77	GO:0009825: multidimensional cell growth	3.30E-03
78	GO:2000377: regulation of reactive oxygen species metabolic process	3.81E-03
79	GO:0009116: nucleoside metabolic process	3.81E-03
80	GO:0009695: jasmonic acid biosynthetic process	4.08E-03
81	GO:0046686: response to cadmium ion	4.30E-03
82	GO:0015992: proton transport	4.35E-03
83	GO:0031408: oxylipin biosynthetic process	4.35E-03
84	GO:0040008: regulation of growth	4.41E-03
85	GO:0010150: leaf senescence	4.62E-03
86	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.50E-03
87	GO:0010087: phloem or xylem histogenesis	5.80E-03
88	GO:0015991: ATP hydrolysis coupled proton transport	5.80E-03
89	GO:0034220: ion transmembrane transport	5.80E-03
90	GO:0010197: polar nucleus fusion	6.11E-03
91	GO:0010182: sugar mediated signaling pathway	6.11E-03
92	GO:0006814: sodium ion transport	6.42E-03
93	GO:0042752: regulation of circadian rhythm	6.42E-03
94	GO:0009646: response to absence of light	6.42E-03
95	GO:0006635: fatty acid beta-oxidation	7.07E-03
96	GO:0010193: response to ozone	7.07E-03
97	GO:0007264: small GTPase mediated signal transduction	7.40E-03
98	GO:0010583: response to cyclopentenone	7.40E-03
99	GO:0016032: viral process	7.40E-03
100	GO:0009723: response to ethylene	8.25E-03
101	GO:0048366: leaf development	8.40E-03
102	GO:0071805: potassium ion transmembrane transport	8.42E-03
103	GO:0009615: response to virus	9.13E-03
104	GO:0010029: regulation of seed germination	9.50E-03
105	GO:0009816: defense response to bacterium, incompatible interaction	9.50E-03
106	GO:0042128: nitrate assimilation	9.87E-03
107	GO:0006974: cellular response to DNA damage stimulus	9.87E-03
108	GO:0015979: photosynthesis	1.01E-02
109	GO:0006950: response to stress	1.02E-02
110	GO:0006979: response to oxidative stress	1.06E-02
111	GO:0048767: root hair elongation	1.14E-02
112	GO:0006499: N-terminal protein myristoylation	1.18E-02
113	GO:0009733: response to auxin	1.21E-02
114	GO:0010119: regulation of stomatal movement	1.22E-02
115	GO:0006629: lipid metabolic process	1.31E-02
116	GO:0006099: tricarboxylic acid cycle	1.34E-02
117	GO:0009753: response to jasmonic acid	1.40E-02
118	GO:0006897: endocytosis	1.47E-02
119	GO:0042542: response to hydrogen peroxide	1.51E-02
120	GO:0051707: response to other organism	1.56E-02
121	GO:0009873: ethylene-activated signaling pathway	1.69E-02
122	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.78E-02
123	GO:0009734: auxin-activated signaling pathway	1.85E-02
124	GO:0009735: response to cytokinin	2.13E-02
125	GO:0006096: glycolytic process	2.17E-02
126	GO:0009611: response to wounding	2.38E-02
127	GO:0051726: regulation of cell cycle	2.58E-02
128	GO:0009737: response to abscisic acid	2.72E-02
129	GO:0000398: mRNA splicing, via spliceosome	2.74E-02
130	GO:0009790: embryo development	3.24E-02
131	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.95E-02
132	GO:0006470: protein dephosphorylation	4.01E-02
133	GO:0010468: regulation of gene expression	4.14E-02
134	GO:0006508: proteolysis	4.28E-02
135	GO:0009414: response to water deprivation	4.58E-02
136	GO:0009658: chloroplast organization	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0004622: lysophospholipase activity	0.00E+00
4	GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity	0.00E+00
5	GO:0004846: urate oxidase activity	0.00E+00
6	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
7	GO:0050242: pyruvate, phosphate dikinase activity	0.00E+00
8	GO:0051723: protein methylesterase activity	0.00E+00
9	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	6.91E-05
10	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	6.91E-05
11	GO:0015208: guanine transmembrane transporter activity	6.91E-05
12	GO:0015294: solute:cation symporter activity	6.91E-05
13	GO:0034450: ubiquitin-ubiquitin ligase activity	6.91E-05
14	GO:0015207: adenine transmembrane transporter activity	6.91E-05
15	GO:0004175: endopeptidase activity	1.36E-04
16	GO:0003988: acetyl-CoA C-acyltransferase activity	1.66E-04
17	GO:0004340: glucokinase activity	1.66E-04
18	GO:0019172: glyoxalase III activity	1.66E-04
19	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.66E-04
20	GO:0016805: dipeptidase activity	2.81E-04
21	GO:0005093: Rab GDP-dissociation inhibitor activity	2.81E-04
22	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	2.81E-04
23	GO:0016151: nickel cation binding	2.81E-04
24	GO:0004749: ribose phosphate diphosphokinase activity	4.06E-04
25	GO:0008276: protein methyltransferase activity	4.06E-04
26	GO:0001653: peptide receptor activity	4.06E-04
27	GO:0004396: hexokinase activity	5.42E-04
28	GO:0019158: mannokinase activity	5.42E-04
29	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.42E-04
30	GO:0015210: uracil transmembrane transporter activity	5.42E-04
31	GO:0005536: glucose binding	5.42E-04
32	GO:0004356: glutamate-ammonia ligase activity	6.87E-04
33	GO:0031386: protein tag	6.87E-04
34	GO:0031593: polyubiquitin binding	8.40E-04
35	GO:0000287: magnesium ion binding	9.55E-04
36	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	9.99E-04
37	GO:0003950: NAD+ ADP-ribosyltransferase activity	9.99E-04
38	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	9.99E-04
39	GO:0004656: procollagen-proline 4-dioxygenase activity	9.99E-04
40	GO:0004620: phospholipase activity	1.17E-03
41	GO:0008235: metalloexopeptidase activity	1.17E-03
42	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.17E-03
43	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.34E-03
44	GO:0008865: fructokinase activity	1.34E-03
45	GO:0052747: sinapyl alcohol dehydrogenase activity	1.34E-03
46	GO:0016787: hydrolase activity	1.67E-03
47	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.73E-03
48	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.73E-03
49	GO:0047617: acyl-CoA hydrolase activity	1.93E-03
50	GO:0045309: protein phosphorylated amino acid binding	1.93E-03
51	GO:0003924: GTPase activity	2.07E-03
52	GO:0008171: O-methyltransferase activity	2.14E-03
53	GO:0004177: aminopeptidase activity	2.36E-03
54	GO:0015386: potassium:proton antiporter activity	2.36E-03
55	GO:0008794: arsenate reductase (glutaredoxin) activity	2.36E-03
56	GO:0019904: protein domain specific binding	2.36E-03
57	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.58E-03
58	GO:0008131: primary amine oxidase activity	3.06E-03
59	GO:0004190: aspartic-type endopeptidase activity	3.30E-03
60	GO:0031418: L-ascorbic acid binding	3.81E-03
61	GO:0004298: threonine-type endopeptidase activity	4.35E-03
62	GO:0048038: quinone binding	7.07E-03
63	GO:0004197: cysteine-type endopeptidase activity	7.40E-03
64	GO:0015385: sodium:proton antiporter activity	7.73E-03
65	GO:0005525: GTP binding	8.05E-03
66	GO:0015250: water channel activity	9.13E-03
67	GO:0042803: protein homodimerization activity	1.11E-02
68	GO:0005096: GTPase activator activity	1.14E-02
69	GO:0005215: transporter activity	1.19E-02
70	GO:0030145: manganese ion binding	1.22E-02
71	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.30E-02
72	GO:0009055: electron carrier activity	1.40E-02
73	GO:0050661: NADP binding	1.43E-02
74	GO:0016491: oxidoreductase activity	1.49E-02
75	GO:0051287: NAD binding	1.78E-02
76	GO:0016887: ATPase activity	2.03E-02
77	GO:0031625: ubiquitin protein ligase binding	2.07E-02
78	GO:0016874: ligase activity	2.37E-02
79	GO:0022857: transmembrane transporter activity	2.37E-02
80	GO:0005515: protein binding	2.39E-02
81	GO:0015035: protein disulfide oxidoreductase activity	2.52E-02
82	GO:0005507: copper ion binding	3.31E-02
83	GO:0008270: zinc ion binding	4.67E-02
84	GO:0046982: protein heterodimerization activity	4.91E-02
85	GO:0005524: ATP binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005829: cytosol	8.35E-07
4	GO:0005773: vacuole	1.59E-04
5	GO:0005737: cytoplasm	1.99E-04
6	GO:0030139: endocytic vesicle	2.81E-04
7	GO:0031461: cullin-RING ubiquitin ligase complex	4.06E-04
8	GO:0005849: mRNA cleavage factor complex	4.06E-04
9	GO:0000323: lytic vacuole	4.06E-04
10	GO:0009507: chloroplast	7.58E-04
11	GO:0000151: ubiquitin ligase complex	8.92E-04
12	GO:0005777: peroxisome	9.34E-04
13	GO:0016363: nuclear matrix	9.99E-04
14	GO:0009570: chloroplast stroma	1.03E-03
15	GO:0000794: condensed nuclear chromosome	1.17E-03
16	GO:0005783: endoplasmic reticulum	1.18E-03
17	GO:0009514: glyoxysome	1.53E-03
18	GO:0031901: early endosome membrane	1.73E-03
19	GO:0000502: proteasome complex	1.90E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	1.93E-03
21	GO:0016602: CCAAT-binding factor complex	2.82E-03
22	GO:0009536: plastid	2.99E-03
23	GO:0005750: mitochondrial respiratory chain complex III	3.06E-03
24	GO:0005769: early endosome	3.56E-03
25	GO:0005774: vacuolar membrane	3.89E-03
26	GO:0005839: proteasome core complex	4.35E-03
27	GO:0005741: mitochondrial outer membrane	4.35E-03
28	GO:0030136: clathrin-coated vesicle	5.50E-03
29	GO:0032580: Golgi cisterna membrane	8.08E-03
30	GO:0005768: endosome	9.17E-03
31	GO:0005819: spindle	1.38E-02
32	GO:0031902: late endosome membrane	1.47E-02
33	GO:0016020: membrane	1.73E-02
34	GO:0005635: nuclear envelope	2.02E-02
35	GO:0010008: endosome membrane	2.22E-02
36	GO:0005794: Golgi apparatus	2.48E-02
37	GO:0009524: phragmoplast	3.01E-02
38	GO:0005759: mitochondrial matrix	3.41E-02