co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G06450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080053: response to phenylalanine	0.00E+00
2	GO:0002376: immune system process	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0006069: ethanol oxidation	0.00E+00
5	GO:0006592: ornithine biosynthetic process	0.00E+00
6	GO:0046292: formaldehyde metabolic process	0.00E+00
7	GO:0043201: response to leucine	0.00E+00
8	GO:0080052: response to histidine	0.00E+00
9	GO:0006099: tricarboxylic acid cycle	2.33E-10
10	GO:0006102: isocitrate metabolic process	5.19E-09
11	GO:0046686: response to cadmium ion	6.76E-09
12	GO:0006101: citrate metabolic process	8.20E-07
13	GO:0045454: cell redox homeostasis	1.23E-05
14	GO:0034976: response to endoplasmic reticulum stress	1.40E-05
15	GO:0006564: L-serine biosynthetic process	2.24E-05
16	GO:0006097: glyoxylate cycle	2.24E-05
17	GO:0006096: glycolytic process	6.03E-05
18	GO:0019673: GDP-mannose metabolic process	1.27E-04
19	GO:0051775: response to redox state	1.27E-04
20	GO:1901183: positive regulation of camalexin biosynthetic process	1.27E-04
21	GO:0080120: CAAX-box protein maturation	1.27E-04
22	GO:0071586: CAAX-box protein processing	1.27E-04
23	GO:0051938: L-glutamate import	1.27E-04
24	GO:0015760: glucose-6-phosphate transport	1.27E-04
25	GO:1990641: response to iron ion starvation	1.27E-04
26	GO:0006007: glucose catabolic process	1.27E-04
27	GO:0010043: response to zinc ion	2.22E-04
28	GO:0019752: carboxylic acid metabolic process	2.94E-04
29	GO:0042939: tripeptide transport	2.94E-04
30	GO:0043091: L-arginine import	2.94E-04
31	GO:0051262: protein tetramerization	2.94E-04
32	GO:0015712: hexose phosphate transport	2.94E-04
33	GO:0006979: response to oxidative stress	4.63E-04
34	GO:0015714: phosphoenolpyruvate transport	4.86E-04
35	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.86E-04
36	GO:0035436: triose phosphate transmembrane transport	4.86E-04
37	GO:0032940: secretion by cell	4.86E-04
38	GO:0048316: seed development	6.64E-04
39	GO:0033014: tetrapyrrole biosynthetic process	6.95E-04
40	GO:0010116: positive regulation of abscisic acid biosynthetic process	6.95E-04
41	GO:0072334: UDP-galactose transmembrane transport	6.95E-04
42	GO:0042938: dipeptide transport	9.21E-04
43	GO:0010109: regulation of photosynthesis	9.21E-04
44	GO:1902584: positive regulation of response to water deprivation	9.21E-04
45	GO:0015713: phosphoglycerate transport	9.21E-04
46	GO:0000304: response to singlet oxygen	1.16E-03
47	GO:0009697: salicylic acid biosynthetic process	1.16E-03
48	GO:0046283: anthocyanin-containing compound metabolic process	1.16E-03
49	GO:0045927: positive regulation of growth	1.16E-03
50	GO:0010252: auxin homeostasis	1.28E-03
51	GO:0006796: phosphate-containing compound metabolic process	1.43E-03
52	GO:0002238: response to molecule of fungal origin	1.43E-03
53	GO:0009643: photosynthetic acclimation	1.43E-03
54	GO:0006014: D-ribose metabolic process	1.43E-03
55	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.43E-03
56	GO:0010405: arabinogalactan protein metabolic process	1.43E-03
57	GO:0007035: vacuolar acidification	1.43E-03
58	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.43E-03
59	GO:0015977: carbon fixation	1.71E-03
60	GO:0034389: lipid particle organization	1.71E-03
61	GO:0042773: ATP synthesis coupled electron transport	2.01E-03
62	GO:1902074: response to salt	2.01E-03
63	GO:1900056: negative regulation of leaf senescence	2.01E-03
64	GO:0080186: developmental vegetative growth	2.01E-03
65	GO:0009407: toxin catabolic process	2.17E-03
66	GO:0030091: protein repair	2.32E-03
67	GO:0006875: cellular metal ion homeostasis	2.32E-03
68	GO:0010120: camalexin biosynthetic process	2.65E-03
69	GO:0006526: arginine biosynthetic process	2.65E-03
70	GO:0010204: defense response signaling pathway, resistance gene-independent	2.65E-03
71	GO:0030968: endoplasmic reticulum unfolded protein response	2.65E-03
72	GO:0006783: heme biosynthetic process	3.00E-03
73	GO:0009744: response to sucrose	3.19E-03
74	GO:0043067: regulation of programmed cell death	3.36E-03
75	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.36E-03
76	GO:0009807: lignan biosynthetic process	4.12E-03
77	GO:0006486: protein glycosylation	4.29E-03
78	GO:0016925: protein sumoylation	4.52E-03
79	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	4.52E-03
80	GO:0006790: sulfur compound metabolic process	4.52E-03
81	GO:0006094: gluconeogenesis	4.93E-03
82	GO:0090351: seedling development	5.80E-03
83	GO:0046854: phosphatidylinositol phosphorylation	5.80E-03
84	GO:0009751: response to salicylic acid	5.81E-03
85	GO:0009624: response to nematode	6.09E-03
86	GO:0006487: protein N-linked glycosylation	6.71E-03
87	GO:0009737: response to abscisic acid	7.18E-03
88	GO:0009695: jasmonic acid biosynthetic process	7.19E-03
89	GO:0031408: oxylipin biosynthetic process	7.68E-03
90	GO:0003333: amino acid transmembrane transport	7.68E-03
91	GO:0016998: cell wall macromolecule catabolic process	7.68E-03
92	GO:0031348: negative regulation of defense response	8.18E-03
93	GO:0042147: retrograde transport, endosome to Golgi	9.75E-03
94	GO:0010118: stomatal movement	1.03E-02
95	GO:0006520: cellular amino acid metabolic process	1.09E-02
96	GO:0048868: pollen tube development	1.09E-02
97	GO:0009735: response to cytokinin	1.09E-02
98	GO:0010154: fruit development	1.09E-02
99	GO:0009749: response to glucose	1.20E-02
100	GO:0019252: starch biosynthetic process	1.20E-02
101	GO:0009555: pollen development	1.23E-02
102	GO:0006891: intra-Golgi vesicle-mediated transport	1.26E-02
103	GO:0006952: defense response	1.32E-02
104	GO:0009567: double fertilization forming a zygote and endosperm	1.44E-02
105	GO:0010286: heat acclimation	1.50E-02
106	GO:0006457: protein folding	1.70E-02
107	GO:0006511: ubiquitin-dependent protein catabolic process	1.81E-02
108	GO:0006950: response to stress	1.83E-02
109	GO:0015995: chlorophyll biosynthetic process	1.83E-02
110	GO:0016311: dephosphorylation	1.90E-02
111	GO:0008219: cell death	1.97E-02
112	GO:0015979: photosynthesis	2.32E-02
113	GO:0045087: innate immune response	2.33E-02
114	GO:0016051: carbohydrate biosynthetic process	2.33E-02
115	GO:0009853: photorespiration	2.33E-02
116	GO:0042542: response to hydrogen peroxide	2.72E-02
117	GO:0032259: methylation	2.87E-02
118	GO:0042742: defense response to bacterium	2.98E-02
119	GO:0009636: response to toxic substance	3.04E-02
120	GO:0006855: drug transmembrane transport	3.12E-02
121	GO:0009846: pollen germination	3.29E-02
122	GO:0042538: hyperosmotic salinity response	3.29E-02
123	GO:0009733: response to auxin	3.44E-02
124	GO:0009809: lignin biosynthetic process	3.46E-02
125	GO:0051603: proteolysis involved in cellular protein catabolic process	3.54E-02
126	GO:0006857: oligopeptide transport	3.63E-02
127	GO:0009626: plant-type hypersensitive response	4.07E-02
128	GO:0006508: proteolysis	4.11E-02
129	GO:0009553: embryo sac development	4.35E-02
130	GO:0009651: response to salt stress	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0008777: acetylornithine deacetylase activity	0.00E+00
3	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0051670: inulinase activity	0.00E+00
6	GO:0050220: prostaglandin-E synthase activity	0.00E+00
7	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
8	GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity	0.00E+00
9	GO:0003994: aconitate hydratase activity	8.20E-07
10	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.24E-06
11	GO:0010279: indole-3-acetic acid amido synthetase activity	1.36E-05
12	GO:0003756: protein disulfide isomerase activity	3.55E-05
13	GO:0004321: fatty-acyl-CoA synthase activity	1.27E-04
14	GO:0031219: levanase activity	1.27E-04
15	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.27E-04
16	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.27E-04
17	GO:0051669: fructan beta-fructosidase activity	1.27E-04
18	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.27E-04
19	GO:0004325: ferrochelatase activity	1.27E-04
20	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.27E-04
21	GO:0030955: potassium ion binding	1.54E-04
22	GO:0004743: pyruvate kinase activity	1.54E-04
23	GO:0018708: thiol S-methyltransferase activity	2.94E-04
24	GO:0015036: disulfide oxidoreductase activity	2.94E-04
25	GO:0042937: tripeptide transporter activity	2.94E-04
26	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.94E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	2.94E-04
28	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.94E-04
29	GO:0015152: glucose-6-phosphate transmembrane transporter activity	2.94E-04
30	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.94E-04
31	GO:0051539: 4 iron, 4 sulfur cluster binding	2.99E-04
32	GO:0000287: magnesium ion binding	4.34E-04
33	GO:0051536: iron-sulfur cluster binding	4.45E-04
34	GO:0051287: NAD binding	4.51E-04
35	GO:0008964: phosphoenolpyruvate carboxylase activity	4.86E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.86E-04
37	GO:0071917: triose-phosphate transmembrane transporter activity	4.86E-04
38	GO:0008430: selenium binding	4.86E-04
39	GO:0004298: threonine-type endopeptidase activity	5.39E-04
40	GO:0004108: citrate (Si)-synthase activity	6.95E-04
41	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	6.95E-04
42	GO:0015189: L-lysine transmembrane transporter activity	6.95E-04
43	GO:0015181: arginine transmembrane transporter activity	6.95E-04
44	GO:0015120: phosphoglycerate transmembrane transporter activity	9.21E-04
45	GO:0042936: dipeptide transporter activity	9.21E-04
46	GO:0005313: L-glutamate transmembrane transporter activity	9.21E-04
47	GO:0005507: copper ion binding	1.03E-03
48	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.16E-03
49	GO:0000104: succinate dehydrogenase activity	1.16E-03
50	GO:0005459: UDP-galactose transmembrane transporter activity	1.16E-03
51	GO:0016462: pyrophosphatase activity	1.43E-03
52	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.43E-03
53	GO:0005509: calcium ion binding	1.66E-03
54	GO:0004602: glutathione peroxidase activity	1.71E-03
55	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.71E-03
56	GO:0051920: peroxiredoxin activity	1.71E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.71E-03
58	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.71E-03
59	GO:0004747: ribokinase activity	1.71E-03
60	GO:0043295: glutathione binding	2.01E-03
61	GO:0016831: carboxy-lyase activity	2.01E-03
62	GO:0004427: inorganic diphosphatase activity	2.01E-03
63	GO:0008865: fructokinase activity	2.32E-03
64	GO:0016209: antioxidant activity	2.32E-03
65	GO:0003746: translation elongation factor activity	2.48E-03
66	GO:0008135: translation factor activity, RNA binding	2.65E-03
67	GO:0016207: 4-coumarate-CoA ligase activity	3.00E-03
68	GO:0004364: glutathione transferase activity	3.06E-03
69	GO:0015174: basic amino acid transmembrane transporter activity	3.36E-03
70	GO:0008233: peptidase activity	3.53E-03
71	GO:0008171: O-methyltransferase activity	3.73E-03
72	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.12E-03
73	GO:0004129: cytochrome-c oxidase activity	4.12E-03
74	GO:0008378: galactosyltransferase activity	4.52E-03
75	GO:0004022: alcohol dehydrogenase (NAD) activity	4.93E-03
76	GO:0005315: inorganic phosphate transmembrane transporter activity	4.93E-03
77	GO:0009982: pseudouridine synthase activity	4.93E-03
78	GO:0004175: endopeptidase activity	5.36E-03
79	GO:0005525: GTP binding	5.65E-03
80	GO:0004190: aspartic-type endopeptidase activity	5.80E-03
81	GO:0009055: electron carrier activity	6.46E-03
82	GO:0003954: NADH dehydrogenase activity	6.71E-03
83	GO:0016758: transferase activity, transferring hexosyl groups	7.42E-03
84	GO:0005524: ATP binding	7.92E-03
85	GO:0015297: antiporter activity	1.00E-02
86	GO:0016853: isomerase activity	1.14E-02
87	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.26E-02
88	GO:0008237: metallopeptidase activity	1.50E-02
89	GO:0016597: amino acid binding	1.57E-02
90	GO:0016740: transferase activity	1.58E-02
91	GO:0030247: polysaccharide binding	1.83E-02
92	GO:0016301: kinase activity	1.99E-02
93	GO:0015238: drug transmembrane transporter activity	2.04E-02
94	GO:0004222: metalloendopeptidase activity	2.11E-02
95	GO:0030145: manganese ion binding	2.19E-02
96	GO:0050661: NADP binding	2.56E-02
97	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-02
98	GO:0004674: protein serine/threonine kinase activity	3.01E-02
99	GO:0005215: transporter activity	3.38E-02
100	GO:0015171: amino acid transmembrane transporter activity	3.72E-02
101	GO:0045735: nutrient reservoir activity	3.89E-02
102	GO:0016874: ligase activity	4.26E-02
103	GO:0015035: protein disulfide oxidoreductase activity	4.53E-02
104	GO:0016746: transferase activity, transferring acyl groups	4.53E-02
105	GO:0016887: ATPase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	4.25E-07
3	GO:0005829: cytosol	1.46E-06
4	GO:0005788: endoplasmic reticulum lumen	1.34E-04
5	GO:0031314: extrinsic component of mitochondrial inner membrane	2.94E-04
6	GO:0030176: integral component of endoplasmic reticulum membrane	3.60E-04
7	GO:0005886: plasma membrane	3.97E-04
8	GO:0005774: vacuolar membrane	4.84E-04
9	GO:0005839: proteasome core complex	5.39E-04
10	GO:0009507: chloroplast	6.18E-04
11	GO:0031969: chloroplast membrane	6.22E-04
12	GO:0005739: mitochondrion	7.43E-04
13	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.21E-04
14	GO:0030660: Golgi-associated vesicle membrane	9.21E-04
15	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.16E-03
16	GO:0005746: mitochondrial respiratory chain	1.16E-03
17	GO:0008250: oligosaccharyltransferase complex	1.16E-03
18	GO:0005762: mitochondrial large ribosomal subunit	1.71E-03
19	GO:0030173: integral component of Golgi membrane	1.71E-03
20	GO:0048046: apoplast	1.81E-03
21	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.32E-03
22	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.32E-03
23	GO:0005811: lipid particle	2.65E-03
24	GO:0000326: protein storage vacuole	2.65E-03
25	GO:0019773: proteasome core complex, alpha-subunit complex	2.65E-03
26	GO:0005740: mitochondrial envelope	3.73E-03
27	GO:0005765: lysosomal membrane	4.12E-03
28	GO:0000502: proteasome complex	4.29E-03
29	GO:0045271: respiratory chain complex I	7.19E-03
30	GO:0016020: membrane	7.84E-03
31	GO:0005759: mitochondrial matrix	9.58E-03
32	GO:0009536: plastid	1.05E-02
33	GO:0005773: vacuole	1.22E-02
34	GO:0005777: peroxisome	1.46E-02
35	GO:0005789: endoplasmic reticulum membrane	1.47E-02
36	GO:0005778: peroxisomal membrane	1.50E-02
37	GO:0005737: cytoplasm	2.78E-02
38	GO:0031966: mitochondrial membrane	3.29E-02
39	GO:0009505: plant-type cell wall	3.94E-02
40	GO:0005747: mitochondrial respiratory chain complex I	3.98E-02