Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
2GO:0071217: cellular response to external biotic stimulus5.42E-08
3GO:0046898: response to cycloheximide5.42E-08
4GO:0010272: response to silver ion2.11E-07
5GO:0071902: positive regulation of protein serine/threonine kinase activity2.76E-05
6GO:0048358: mucilage pectin biosynthetic process2.76E-05
7GO:0090421: embryonic meristem initiation2.76E-05
8GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic2.76E-05
9GO:0010393: galacturonan metabolic process2.76E-05
10GO:0048508: embryonic meristem development2.76E-05
11GO:0045931: positive regulation of mitotic cell cycle2.76E-05
12GO:0048208: COPII vesicle coating2.76E-05
13GO:0097298: regulation of nucleus size2.76E-05
14GO:0061014: positive regulation of mRNA catabolic process2.76E-05
15GO:0009909: regulation of flower development3.48E-05
16GO:0010073: meristem maintenance5.92E-05
17GO:0009945: radial axis specification7.01E-05
18GO:0010506: regulation of autophagy1.23E-04
19GO:0071230: cellular response to amino acid stimulus1.23E-04
20GO:0031929: TOR signaling1.23E-04
21GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.23E-04
22GO:0010587: miRNA catabolic process1.83E-04
23GO:0080001: mucilage extrusion from seed coat1.83E-04
24GO:0010286: heat acclimation1.91E-04
25GO:0001666: response to hypoxia2.16E-04
26GO:0006974: cellular response to DNA damage stimulus2.42E-04
27GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA2.48E-04
28GO:0010218: response to far red light3.14E-04
29GO:1902183: regulation of shoot apical meristem development3.18E-04
30GO:0048359: mucilage metabolic process involved in seed coat development3.18E-04
31GO:0047484: regulation of response to osmotic stress3.92E-04
32GO:0009267: cellular response to starvation3.92E-04
33GO:0009942: longitudinal axis specification4.69E-04
34GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.69E-04
35GO:1901001: negative regulation of response to salt stress4.69E-04
36GO:0070370: cellular heat acclimation5.49E-04
37GO:0030307: positive regulation of cell growth5.49E-04
38GO:1902074: response to salt5.49E-04
39GO:0006401: RNA catabolic process5.49E-04
40GO:0045995: regulation of embryonic development5.49E-04
41GO:0006402: mRNA catabolic process6.32E-04
42GO:0040029: regulation of gene expression, epigenetic6.32E-04
43GO:0006997: nucleus organization7.18E-04
44GO:0009808: lignin metabolic process7.18E-04
45GO:0009880: embryonic pattern specification7.18E-04
46GO:0009827: plant-type cell wall modification7.18E-04
47GO:0009620: response to fungus7.93E-04
48GO:0010206: photosystem II repair8.07E-04
49GO:2000024: regulation of leaf development8.07E-04
50GO:0001708: cell fate specification8.07E-04
51GO:0010345: suberin biosynthetic process8.07E-04
52GO:0009624: response to nematode8.63E-04
53GO:0018105: peptidyl-serine phosphorylation8.88E-04
54GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process8.99E-04
55GO:0010018: far-red light signaling pathway8.99E-04
56GO:0009641: shade avoidance9.92E-04
57GO:0010192: mucilage biosynthetic process9.92E-04
58GO:0031627: telomeric loop formation9.92E-04
59GO:0010152: pollen maturation1.19E-03
60GO:0008361: regulation of cell size1.19E-03
61GO:0009790: embryo development1.24E-03
62GO:0010540: basipetal auxin transport1.40E-03
63GO:0048467: gynoecium development1.40E-03
64GO:0010143: cutin biosynthetic process1.40E-03
65GO:0009901: anther dehiscence1.50E-03
66GO:0010025: wax biosynthetic process1.62E-03
67GO:0042753: positive regulation of circadian rhythm1.62E-03
68GO:0009617: response to bacterium1.72E-03
69GO:0009944: polarity specification of adaxial/abaxial axis1.73E-03
70GO:0008299: isoprenoid biosynthetic process1.85E-03
71GO:0051260: protein homooligomerization1.97E-03
72GO:0030433: ubiquitin-dependent ERAD pathway2.09E-03
73GO:0031348: negative regulation of defense response2.09E-03
74GO:0010017: red or far-red light signaling pathway2.09E-03
75GO:0009294: DNA mediated transformation2.22E-03
76GO:0001944: vasculature development2.22E-03
77GO:0009625: response to insect2.22E-03
78GO:0009414: response to water deprivation2.26E-03
79GO:0048443: stamen development2.35E-03
80GO:0009723: response to ethylene2.56E-03
81GO:0010118: stomatal movement2.61E-03
82GO:0048653: anther development2.61E-03
83GO:0042335: cuticle development2.61E-03
84GO:0008360: regulation of cell shape2.74E-03
85GO:0009630: gravitropism3.31E-03
86GO:0045892: negative regulation of transcription, DNA-templated3.32E-03
87GO:0030163: protein catabolic process3.45E-03
88GO:0006914: autophagy3.60E-03
89GO:0006904: vesicle docking involved in exocytosis3.75E-03
90GO:0048364: root development4.20E-03
91GO:0009753: response to jasmonic acid4.32E-03
92GO:0016049: cell growth4.70E-03
93GO:0048481: plant ovule development4.87E-03
94GO:0009867: jasmonic acid mediated signaling pathway5.73E-03
95GO:0009908: flower development6.44E-03
96GO:0006887: exocytosis6.45E-03
97GO:0006897: endocytosis6.45E-03
98GO:0010114: response to red light6.82E-03
99GO:0009611: response to wounding7.28E-03
100GO:0035556: intracellular signal transduction7.51E-03
101GO:0009846: pollen germination7.99E-03
102GO:0045893: positive regulation of transcription, DNA-templated8.17E-03
103GO:0006364: rRNA processing8.40E-03
104GO:0009585: red, far-red light phototransduction8.40E-03
105GO:0000398: mRNA splicing, via spliceosome1.19E-02
106GO:0006979: response to oxidative stress1.46E-02
107GO:0007623: circadian rhythm1.58E-02
108GO:0030154: cell differentiation1.58E-02
109GO:0009733: response to auxin1.62E-02
110GO:0010228: vegetative to reproductive phase transition of meristem1.63E-02
111GO:0009739: response to gibberellin1.71E-02
112GO:0015031: protein transport1.84E-02
113GO:0009826: unidimensional cell growth2.10E-02
114GO:0006351: transcription, DNA-templated2.13E-02
115GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.58E-02
116GO:0046777: protein autophosphorylation2.64E-02
117GO:0009751: response to salicylic acid3.29E-02
118GO:0006397: mRNA processing3.42E-02
119GO:0009873: ethylene-activated signaling pathway3.98E-02
120GO:0009734: auxin-activated signaling pathway4.24E-02
121GO:0016567: protein ubiquitination4.39E-02
122GO:0006508: proteolysis4.43E-02
123GO:0006355: regulation of transcription, DNA-templated4.55E-02
124GO:0009735: response to cytokinin4.68E-02
125GO:0009738: abscisic acid-activated signaling pathway4.87E-02
RankGO TermAdjusted P value
1GO:0060090: binding, bridging0.00E+00
2GO:0005515: protein binding2.23E-07
3GO:0008301: DNA binding, bending2.76E-05
4GO:0004534: 5'-3' exoribonuclease activity7.01E-05
5GO:0030619: U1 snRNA binding7.01E-05
6GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.48E-04
7GO:0008409: 5'-3' exonuclease activity2.48E-04
8GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.69E-04
9GO:0016301: kinase activity5.42E-04
10GO:0042162: telomeric DNA binding5.49E-04
11GO:0030674: protein binding, bridging6.32E-04
12GO:0003691: double-stranded telomeric DNA binding1.09E-03
13GO:0000175: 3'-5'-exoribonuclease activity1.29E-03
14GO:0003712: transcription cofactor activity1.50E-03
15GO:0004540: ribonuclease activity1.97E-03
16GO:0046982: protein heterodimerization activity2.18E-03
17GO:0004527: exonuclease activity2.74E-03
18GO:0003713: transcription coactivator activity2.74E-03
19GO:0004842: ubiquitin-protein transferase activity3.50E-03
20GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.75E-03
21GO:0003729: mRNA binding3.84E-03
22GO:0004674: protein serine/threonine kinase activity3.98E-03
23GO:0009931: calcium-dependent protein serine/threonine kinase activity4.38E-03
24GO:0004683: calmodulin-dependent protein kinase activity4.54E-03
25GO:0008236: serine-type peptidase activity4.70E-03
26GO:0004222: metalloendopeptidase activity5.21E-03
27GO:0003746: translation elongation factor activity5.73E-03
28GO:0004252: serine-type endopeptidase activity1.36E-02
29GO:0008270: zinc ion binding1.50E-02
30GO:0003677: DNA binding2.72E-02
31GO:0042803: protein homodimerization activity2.95E-02
32GO:0003723: RNA binding3.12E-02
33GO:0004519: endonuclease activity3.52E-02
34GO:0005524: ATP binding4.47E-02
35GO:0016887: ATPase activity4.53E-02
36GO:0000166: nucleotide binding4.99E-02
RankGO TermAdjusted P value
1GO:0031931: TORC1 complex1.23E-04
2GO:0005652: nuclear lamina1.23E-04
3GO:0005634: nucleus1.34E-04
4GO:0005844: polysome2.48E-04
5GO:0000178: exosome (RNase complex)3.18E-04
6GO:0031463: Cul3-RING ubiquitin ligase complex3.92E-04
7GO:0000243: commitment complex3.92E-04
8GO:0010369: chromocenter4.69E-04
9GO:0071004: U2-type prespliceosome6.32E-04
10GO:0034399: nuclear periphery6.32E-04
11GO:0000783: nuclear telomere cap complex7.18E-04
12GO:0034045: pre-autophagosomal structure membrane7.18E-04
13GO:0010494: cytoplasmic stress granule8.07E-04
14GO:0005685: U1 snRNP8.07E-04
15GO:0071011: precatalytic spliceosome8.99E-04
16GO:0005654: nucleoplasm1.04E-03
17GO:0030176: integral component of endoplasmic reticulum membrane1.50E-03
18GO:0005795: Golgi stack1.50E-03
19GO:0031965: nuclear membrane3.02E-03
20GO:0000145: exocyst3.31E-03
21GO:0000932: P-body4.06E-03
22GO:0019005: SCF ubiquitin ligase complex4.87E-03
23GO:0031977: thylakoid lumen6.45E-03
24GO:0016607: nuclear speck9.65E-03
25GO:0009543: chloroplast thylakoid lumen1.26E-02
26GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.30E-02
27GO:0009535: chloroplast thylakoid membrane3.24E-02
<
Gene type



Gene DE type