GO Enrichment Analysis of Co-expressed Genes with
AT3G04940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045860: positive regulation of protein kinase activity | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 4 | GO:0009913: epidermal cell differentiation | 1.04E-05 |
| 5 | GO:0015808: L-alanine transport | 6.26E-05 |
| 6 | GO:0010480: microsporocyte differentiation | 6.26E-05 |
| 7 | GO:0000481: maturation of 5S rRNA | 6.26E-05 |
| 8 | GO:0010028: xanthophyll cycle | 6.26E-05 |
| 9 | GO:0034337: RNA folding | 6.26E-05 |
| 10 | GO:0000025: maltose catabolic process | 6.26E-05 |
| 11 | GO:0005983: starch catabolic process | 8.91E-05 |
| 12 | GO:0098712: L-glutamate import across plasma membrane | 1.52E-04 |
| 13 | GO:0016122: xanthophyll metabolic process | 1.52E-04 |
| 14 | GO:0010289: homogalacturonan biosynthetic process | 1.52E-04 |
| 15 | GO:0015804: neutral amino acid transport | 1.52E-04 |
| 16 | GO:0055129: L-proline biosynthetic process | 1.52E-04 |
| 17 | GO:0018105: peptidyl-serine phosphorylation | 2.46E-04 |
| 18 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.73E-04 |
| 19 | GO:0051639: actin filament network formation | 3.73E-04 |
| 20 | GO:0051764: actin crosslink formation | 4.99E-04 |
| 21 | GO:0015994: chlorophyll metabolic process | 4.99E-04 |
| 22 | GO:0048497: maintenance of floral organ identity | 6.32E-04 |
| 23 | GO:0010438: cellular response to sulfur starvation | 6.32E-04 |
| 24 | GO:0016120: carotene biosynthetic process | 6.32E-04 |
| 25 | GO:0009759: indole glucosinolate biosynthetic process | 7.73E-04 |
| 26 | GO:0006561: proline biosynthetic process | 7.73E-04 |
| 27 | GO:0042549: photosystem II stabilization | 7.73E-04 |
| 28 | GO:0009942: longitudinal axis specification | 9.20E-04 |
| 29 | GO:0043090: amino acid import | 1.07E-03 |
| 30 | GO:0048437: floral organ development | 1.07E-03 |
| 31 | GO:0046777: protein autophosphorylation | 1.18E-03 |
| 32 | GO:0032508: DNA duplex unwinding | 1.24E-03 |
| 33 | GO:0008610: lipid biosynthetic process | 1.24E-03 |
| 34 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 1.58E-03 |
| 35 | GO:0048507: meristem development | 1.58E-03 |
| 36 | GO:0045036: protein targeting to chloroplast | 1.96E-03 |
| 37 | GO:0008152: metabolic process | 1.99E-03 |
| 38 | GO:0048229: gametophyte development | 2.17E-03 |
| 39 | GO:0046856: phosphatidylinositol dephosphorylation | 2.17E-03 |
| 40 | GO:0000038: very long-chain fatty acid metabolic process | 2.17E-03 |
| 41 | GO:0009773: photosynthetic electron transport in photosystem I | 2.17E-03 |
| 42 | GO:0002213: defense response to insect | 2.37E-03 |
| 43 | GO:0006006: glucose metabolic process | 2.58E-03 |
| 44 | GO:0018107: peptidyl-threonine phosphorylation | 2.58E-03 |
| 45 | GO:0010075: regulation of meristem growth | 2.58E-03 |
| 46 | GO:0009767: photosynthetic electron transport chain | 2.58E-03 |
| 47 | GO:0010102: lateral root morphogenesis | 2.58E-03 |
| 48 | GO:0009934: regulation of meristem structural organization | 2.80E-03 |
| 49 | GO:0000162: tryptophan biosynthetic process | 3.26E-03 |
| 50 | GO:0051017: actin filament bundle assembly | 3.49E-03 |
| 51 | GO:0016575: histone deacetylation | 3.74E-03 |
| 52 | GO:0035556: intracellular signal transduction | 3.89E-03 |
| 53 | GO:0080092: regulation of pollen tube growth | 4.24E-03 |
| 54 | GO:0010051: xylem and phloem pattern formation | 5.31E-03 |
| 55 | GO:0048653: anther development | 5.31E-03 |
| 56 | GO:0042335: cuticle development | 5.31E-03 |
| 57 | GO:0006662: glycerol ether metabolic process | 5.59E-03 |
| 58 | GO:0010305: leaf vascular tissue pattern formation | 5.59E-03 |
| 59 | GO:0048825: cotyledon development | 6.17E-03 |
| 60 | GO:0009791: post-embryonic development | 6.17E-03 |
| 61 | GO:0009723: response to ethylene | 7.25E-03 |
| 62 | GO:0071805: potassium ion transmembrane transport | 7.70E-03 |
| 63 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 8.04E-03 |
| 64 | GO:0009816: defense response to bacterium, incompatible interaction | 8.68E-03 |
| 65 | GO:0006869: lipid transport | 1.02E-02 |
| 66 | GO:0009733: response to auxin | 1.03E-02 |
| 67 | GO:0032259: methylation | 1.10E-02 |
| 68 | GO:0016042: lipid catabolic process | 1.12E-02 |
| 69 | GO:0016051: carbohydrate biosynthetic process | 1.19E-02 |
| 70 | GO:0034599: cellular response to oxidative stress | 1.23E-02 |
| 71 | GO:0009753: response to jasmonic acid | 1.23E-02 |
| 72 | GO:0006468: protein phosphorylation | 1.25E-02 |
| 73 | GO:0006631: fatty acid metabolic process | 1.34E-02 |
| 74 | GO:0042538: hyperosmotic salinity response | 1.67E-02 |
| 75 | GO:0006813: potassium ion transport | 1.75E-02 |
| 76 | GO:0009416: response to light stimulus | 2.05E-02 |
| 77 | GO:0009624: response to nematode | 2.25E-02 |
| 78 | GO:0009737: response to abscisic acid | 2.31E-02 |
| 79 | GO:0009845: seed germination | 2.80E-02 |
| 80 | GO:0042744: hydrogen peroxide catabolic process | 2.90E-02 |
| 81 | GO:0009790: embryo development | 2.95E-02 |
| 82 | GO:0006633: fatty acid biosynthetic process | 3.11E-02 |
| 83 | GO:0006413: translational initiation | 3.17E-02 |
| 84 | GO:0007623: circadian rhythm | 3.33E-02 |
| 85 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.44E-02 |
| 86 | GO:0009739: response to gibberellin | 3.60E-02 |
| 87 | GO:0006470: protein dephosphorylation | 3.66E-02 |
| 88 | GO:0030154: cell differentiation | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 2 | GO:0004676: 3-phosphoinositide-dependent protein kinase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 7 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 8 | GO:0004134: 4-alpha-glucanotransferase activity | 6.26E-05 |
| 9 | GO:0019203: carbohydrate phosphatase activity | 6.26E-05 |
| 10 | GO:0030941: chloroplast targeting sequence binding | 6.26E-05 |
| 11 | GO:0015194: L-serine transmembrane transporter activity | 6.26E-05 |
| 12 | GO:0004349: glutamate 5-kinase activity | 6.26E-05 |
| 13 | GO:0050308: sugar-phosphatase activity | 6.26E-05 |
| 14 | GO:0004350: glutamate-5-semialdehyde dehydrogenase activity | 6.26E-05 |
| 15 | GO:0015180: L-alanine transmembrane transporter activity | 1.52E-04 |
| 16 | GO:0015193: L-proline transmembrane transporter activity | 2.57E-04 |
| 17 | GO:0048487: beta-tubulin binding | 3.73E-04 |
| 18 | GO:0015186: L-glutamine transmembrane transporter activity | 3.73E-04 |
| 19 | GO:0019201: nucleotide kinase activity | 3.73E-04 |
| 20 | GO:0015175: neutral amino acid transmembrane transporter activity | 3.73E-04 |
| 21 | GO:0004445: inositol-polyphosphate 5-phosphatase activity | 3.73E-04 |
| 22 | GO:0051861: glycolipid binding | 4.99E-04 |
| 23 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.99E-04 |
| 24 | GO:0005313: L-glutamate transmembrane transporter activity | 4.99E-04 |
| 25 | GO:0016301: kinase activity | 6.55E-04 |
| 26 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 7.73E-04 |
| 27 | GO:2001070: starch binding | 7.73E-04 |
| 28 | GO:0042578: phosphoric ester hydrolase activity | 7.73E-04 |
| 29 | GO:0004017: adenylate kinase activity | 9.20E-04 |
| 30 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 9.20E-04 |
| 31 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 9.20E-04 |
| 32 | GO:0070300: phosphatidic acid binding | 9.20E-04 |
| 33 | GO:0004033: aldo-keto reductase (NADP) activity | 1.24E-03 |
| 34 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.41E-03 |
| 35 | GO:0004674: protein serine/threonine kinase activity | 1.56E-03 |
| 36 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.58E-03 |
| 37 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.17E-03 |
| 38 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 2.37E-03 |
| 39 | GO:0008289: lipid binding | 2.67E-03 |
| 40 | GO:0005524: ATP binding | 3.08E-03 |
| 41 | GO:0004672: protein kinase activity | 3.22E-03 |
| 42 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 3.26E-03 |
| 43 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 3.26E-03 |
| 44 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 3.26E-03 |
| 45 | GO:0004407: histone deacetylase activity | 3.49E-03 |
| 46 | GO:0005528: FK506 binding | 3.49E-03 |
| 47 | GO:0015079: potassium ion transmembrane transporter activity | 3.74E-03 |
| 48 | GO:0033612: receptor serine/threonine kinase binding | 3.98E-03 |
| 49 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 4.24E-03 |
| 50 | GO:0047134: protein-disulfide reductase activity | 5.03E-03 |
| 51 | GO:0016787: hydrolase activity | 5.71E-03 |
| 52 | GO:0004791: thioredoxin-disulfide reductase activity | 5.88E-03 |
| 53 | GO:0008168: methyltransferase activity | 6.04E-03 |
| 54 | GO:0016788: hydrolase activity, acting on ester bonds | 6.39E-03 |
| 55 | GO:0048038: quinone binding | 6.46E-03 |
| 56 | GO:0004518: nuclease activity | 6.76E-03 |
| 57 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.07E-03 |
| 58 | GO:0051015: actin filament binding | 7.07E-03 |
| 59 | GO:0052689: carboxylic ester hydrolase activity | 8.59E-03 |
| 60 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 9.01E-03 |
| 61 | GO:0004683: calmodulin-dependent protein kinase activity | 9.36E-03 |
| 62 | GO:0003746: translation elongation factor activity | 1.19E-02 |
| 63 | GO:0043621: protein self-association | 1.50E-02 |
| 64 | GO:0035091: phosphatidylinositol binding | 1.50E-02 |
| 65 | GO:0015293: symporter activity | 1.54E-02 |
| 66 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.58E-02 |
| 67 | GO:0015171: amino acid transmembrane transporter activity | 1.89E-02 |
| 68 | GO:0004650: polygalacturonase activity | 2.11E-02 |
| 69 | GO:0003779: actin binding | 2.21E-02 |
| 70 | GO:0015035: protein disulfide oxidoreductase activity | 2.30E-02 |
| 71 | GO:0016746: transferase activity, transferring acyl groups | 2.30E-02 |
| 72 | GO:0016829: lyase activity | 2.80E-02 |
| 73 | GO:0003743: translation initiation factor activity | 3.72E-02 |
| 74 | GO:0005509: calcium ion binding | 3.81E-02 |
| 75 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.95E-02 |
| 76 | GO:0042802: identical protein binding | 3.95E-02 |
| 77 | GO:0044212: transcription regulatory region DNA binding | 4.13E-02 |
| 78 | GO:0004601: peroxidase activity | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.34E-10 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 6.54E-06 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 2.10E-05 |
| 4 | GO:0009344: nitrite reductase complex [NAD(P)H] | 6.26E-05 |
| 5 | GO:0030095: chloroplast photosystem II | 1.18E-04 |
| 6 | GO:0009534: chloroplast thylakoid | 1.27E-04 |
| 7 | GO:0032432: actin filament bundle | 3.73E-04 |
| 8 | GO:0009570: chloroplast stroma | 7.74E-04 |
| 9 | GO:0031359: integral component of chloroplast outer membrane | 1.07E-03 |
| 10 | GO:0031977: thylakoid lumen | 1.16E-03 |
| 11 | GO:0009501: amyloplast | 1.24E-03 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.58E-03 |
| 13 | GO:0005884: actin filament | 2.17E-03 |
| 14 | GO:0032040: small-subunit processome | 2.37E-03 |
| 15 | GO:0010287: plastoglobule | 2.80E-03 |
| 16 | GO:0042651: thylakoid membrane | 3.74E-03 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 3.74E-03 |
| 18 | GO:0019898: extrinsic component of membrane | 6.17E-03 |
| 19 | GO:0009707: chloroplast outer membrane | 1.01E-02 |
| 20 | GO:0009941: chloroplast envelope | 1.87E-02 |
| 21 | GO:0009579: thylakoid | 2.45E-02 |
| 22 | GO:0005886: plasma membrane | 2.90E-02 |
| 23 | GO:0005618: cell wall | 4.98E-02 |