co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0010028: xanthophyll cycle	3.00E-05
3	GO:0006833: water transport	5.28E-05
4	GO:0010541: acropetal auxin transport	7.58E-05
5	GO:0001736: establishment of planar polarity	7.58E-05
6	GO:0016122: xanthophyll metabolic process	7.58E-05
7	GO:0055129: L-proline biosynthetic process	7.58E-05
8	GO:0034220: ion transmembrane transport	1.20E-04
9	GO:0009958: positive gravitropism	1.30E-04
10	GO:0080055: low-affinity nitrate transport	1.32E-04
11	GO:0010160: formation of animal organ boundary	1.32E-04
12	GO:1901332: negative regulation of lateral root development	1.97E-04
13	GO:0080170: hydrogen peroxide transmembrane transport	1.97E-04
14	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.97E-04
15	GO:0015994: chlorophyll metabolic process	2.67E-04
16	GO:0010311: lateral root formation	3.32E-04
17	GO:0060918: auxin transport	4.20E-04
18	GO:1902456: regulation of stomatal opening	4.20E-04
19	GO:0006561: proline biosynthetic process	4.20E-04
20	GO:0009926: auxin polar transport	5.12E-04
21	GO:0010196: nonphotochemical quenching	5.88E-04
22	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.76E-04
23	GO:0009734: auxin-activated signaling pathway	8.30E-04
24	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.63E-04
25	GO:0048829: root cap development	1.06E-03
26	GO:1903507: negative regulation of nucleic acid-templated transcription	1.16E-03
27	GO:0048765: root hair cell differentiation	1.16E-03
28	GO:0009684: indoleacetic acid biosynthetic process	1.16E-03
29	GO:0008361: regulation of cell size	1.27E-03
30	GO:0016024: CDP-diacylglycerol biosynthetic process	1.27E-03
31	GO:0055085: transmembrane transport	1.48E-03
32	GO:0010540: basipetal auxin transport	1.50E-03
33	GO:0010143: cutin biosynthetic process	1.50E-03
34	GO:0007017: microtubule-based process	1.98E-03
35	GO:0003333: amino acid transmembrane transport	2.11E-03
36	GO:0061077: chaperone-mediated protein folding	2.11E-03
37	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.25E-03
38	GO:0035428: hexose transmembrane transport	2.25E-03
39	GO:0048443: stamen development	2.52E-03
40	GO:0009414: response to water deprivation	2.58E-03
41	GO:0009651: response to salt stress	2.62E-03
42	GO:0009723: response to ethylene	2.84E-03
43	GO:0006662: glycerol ether metabolic process	2.94E-03
44	GO:0046323: glucose import	2.94E-03
45	GO:0009733: response to auxin	3.08E-03
46	GO:0045454: cell redox homeostasis	3.63E-03
47	GO:0009639: response to red or far red light	3.87E-03
48	GO:0018298: protein-chromophore linkage	5.23E-03
49	GO:0000160: phosphorelay signal transduction system	5.41E-03
50	GO:0010218: response to far red light	5.60E-03
51	GO:0048527: lateral root development	5.78E-03
52	GO:0006865: amino acid transport	5.97E-03
53	GO:0009867: jasmonic acid mediated signaling pathway	6.16E-03
54	GO:0009637: response to blue light	6.16E-03
55	GO:0034599: cellular response to oxidative stress	6.35E-03
56	GO:0009737: response to abscisic acid	6.92E-03
57	GO:0006631: fatty acid metabolic process	6.94E-03
58	GO:0009640: photomorphogenesis	7.34E-03
59	GO:0031347: regulation of defense response	8.38E-03
60	GO:0042538: hyperosmotic salinity response	8.60E-03
61	GO:0051603: proteolysis involved in cellular protein catabolic process	9.25E-03
62	GO:0006857: oligopeptide transport	9.47E-03
63	GO:0009624: response to nematode	1.16E-02
64	GO:0009742: brassinosteroid mediated signaling pathway	1.21E-02
65	GO:0006413: translational initiation	1.62E-02
66	GO:0007623: circadian rhythm	1.70E-02
67	GO:0006810: transport	2.36E-02
68	GO:0005975: carbohydrate metabolic process	2.44E-02
69	GO:0045892: negative regulation of transcription, DNA-templated	3.11E-02
70	GO:0032259: methylation	3.47E-02
71	GO:0009408: response to heat	3.58E-02
72	GO:0048364: root development	3.69E-02
73	GO:0008152: metabolic process	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0004349: glutamate 5-kinase activity	3.00E-05
4	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	3.00E-05
5	GO:0016868: intramolecular transferase activity, phosphotransferases	7.58E-05
6	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.32E-04
7	GO:0015250: water channel activity	2.41E-04
8	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.67E-04
9	GO:0010011: auxin binding	2.67E-04
10	GO:0010328: auxin influx transmembrane transporter activity	2.67E-04
11	GO:0004040: amidase activity	3.42E-04
12	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.20E-04
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.20E-04
14	GO:0009881: photoreceptor activity	5.88E-04
15	GO:0044183: protein binding involved in protein folding	1.16E-03
16	GO:0000155: phosphorelay sensor kinase activity	1.38E-03
17	GO:0004565: beta-galactosidase activity	1.38E-03
18	GO:0010329: auxin efflux transmembrane transporter activity	1.38E-03
19	GO:0005528: FK506 binding	1.86E-03
20	GO:0003714: transcription corepressor activity	1.86E-03
21	GO:0003727: single-stranded RNA binding	2.52E-03
22	GO:0047134: protein-disulfide reductase activity	2.66E-03
23	GO:0005215: transporter activity	3.02E-03
24	GO:0005355: glucose transmembrane transporter activity	3.09E-03
25	GO:0004791: thioredoxin-disulfide reductase activity	3.09E-03
26	GO:0004518: nuclease activity	3.55E-03
27	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.71E-03
28	GO:0004871: signal transducer activity	3.81E-03
29	GO:0016791: phosphatase activity	3.87E-03
30	GO:0005200: structural constituent of cytoskeleton	4.03E-03
31	GO:0003993: acid phosphatase activity	6.35E-03
32	GO:0004185: serine-type carboxypeptidase activity	7.34E-03
33	GO:0015293: symporter activity	7.96E-03
34	GO:0005198: structural molecule activity	7.96E-03
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.17E-03
36	GO:0015171: amino acid transmembrane transporter activity	9.70E-03
37	GO:0031625: ubiquitin protein ligase binding	9.70E-03
38	GO:0015035: protein disulfide oxidoreductase activity	1.18E-02
39	GO:0016746: transferase activity, transferring acyl groups	1.18E-02
40	GO:0015144: carbohydrate transmembrane transporter activity	1.54E-02
41	GO:0005351: sugar:proton symporter activity	1.68E-02
42	GO:0003743: translation initiation factor activity	1.90E-02
43	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.02E-02
44	GO:0042802: identical protein binding	2.02E-02
45	GO:0008168: methyltransferase activity	2.26E-02
46	GO:0042803: protein homodimerization activity	3.18E-02
47	GO:0004722: protein serine/threonine phosphatase activity	3.29E-02
48	GO:0003924: GTPase activity	3.58E-02
49	GO:0005515: protein binding	3.98E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009534: chloroplast thylakoid	7.12E-07
3	GO:0009507: chloroplast	2.55E-04
4	GO:0009570: chloroplast stroma	3.93E-04
5	GO:0009986: cell surface	5.88E-04
6	GO:0009505: plant-type cell wall	5.98E-04
7	GO:0042644: chloroplast nucleoid	8.63E-04
8	GO:0045298: tubulin complex	8.63E-04
9	GO:0016020: membrane	9.55E-04
10	GO:0009543: chloroplast thylakoid lumen	1.18E-03
11	GO:0009508: plastid chromosome	1.38E-03
12	GO:0009535: chloroplast thylakoid membrane	1.42E-03
13	GO:0030095: chloroplast photosystem II	1.50E-03
14	GO:0042651: thylakoid membrane	1.98E-03
15	GO:0031969: chloroplast membrane	3.04E-03
16	GO:0009295: nucleoid	4.03E-03
17	GO:0005773: vacuole	5.26E-03
18	GO:0005887: integral component of plasma membrane	6.06E-03
19	GO:0031977: thylakoid lumen	6.94E-03
20	GO:0005886: plasma membrane	1.24E-02
21	GO:0010287: plastoglobule	1.31E-02
22	GO:0005618: cell wall	1.52E-02
23	GO:0009941: chloroplast envelope	1.89E-02
24	GO:0046658: anchored component of plasma membrane	2.08E-02
25	GO:0005874: microtubule	2.64E-02