Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:0090143: nucleoid organization0.00E+00
3GO:0009967: positive regulation of signal transduction0.00E+00
4GO:0006412: translation7.83E-120
5GO:0042254: ribosome biogenesis8.86E-43
6GO:0000027: ribosomal large subunit assembly1.34E-13
7GO:0071215: cellular response to abscisic acid stimulus2.89E-05
8GO:0009955: adaxial/abaxial pattern specification4.51E-05
9GO:0006407: rRNA export from nucleus1.23E-04
10GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.23E-04
11GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.23E-04
12GO:0048569: post-embryonic animal organ development2.86E-04
13GO:0009965: leaf morphogenesis3.88E-04
14GO:0009735: response to cytokinin4.38E-04
15GO:1902626: assembly of large subunit precursor of preribosome4.72E-04
16GO:0002181: cytoplasmic translation4.72E-04
17GO:0010476: gibberellin mediated signaling pathway4.72E-04
18GO:0042256: mature ribosome assembly4.72E-04
19GO:0044205: 'de novo' UMP biosynthetic process8.97E-04
20GO:0042274: ribosomal small subunit biogenesis8.97E-04
21GO:0006414: translational elongation1.04E-03
22GO:0009845: seed germination1.11E-03
23GO:0000470: maturation of LSU-rRNA1.39E-03
24GO:0000911: cytokinesis by cell plate formation1.66E-03
25GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.95E-03
26GO:0000028: ribosomal small subunit assembly2.26E-03
27GO:0001558: regulation of cell growth2.58E-03
28GO:0006526: arginine biosynthetic process2.58E-03
29GO:0009409: response to cold3.01E-03
30GO:0008283: cell proliferation3.06E-03
31GO:0009644: response to high light intensity3.30E-03
32GO:0010015: root morphogenesis4.00E-03
33GO:0006913: nucleocytoplasmic transport4.00E-03
34GO:0006364: rRNA processing4.11E-03
35GO:0006417: regulation of translation4.54E-03
36GO:0010229: inflorescence development4.79E-03
37GO:0010102: lateral root morphogenesis4.79E-03
38GO:0048367: shoot system development5.00E-03
39GO:0006541: glutamine metabolic process5.20E-03
40GO:0010020: chloroplast fission5.20E-03
41GO:0051302: regulation of cell division6.98E-03
42GO:0009793: embryo development ending in seed dormancy7.67E-03
43GO:0040007: growth8.43E-03
44GO:0006413: translational initiation9.39E-03
45GO:0009749: response to glucose1.16E-02
46GO:0009791: post-embryonic development1.16E-02
47GO:0010090: trichome morphogenesis1.34E-02
48GO:0048364: root development2.99E-02
49GO:0009620: response to fungus4.04E-02
RankGO TermAdjusted P value
1GO:0005078: MAP-kinase scaffold activity0.00E+00
2GO:0003735: structural constituent of ribosome2.59E-153
3GO:0003729: mRNA binding2.42E-26
4GO:0019843: rRNA binding1.76E-13
5GO:0008097: 5S rRNA binding6.84E-06
6GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity1.23E-04
7GO:0032947: protein complex scaffold4.72E-04
8GO:0070181: small ribosomal subunit rRNA binding4.72E-04
9GO:0008235: metalloexopeptidase activity1.95E-03
10GO:0008135: translation factor activity, RNA binding2.58E-03
11GO:0004871: signal transducer activity4.55E-03
12GO:0003723: RNA binding8.60E-03
13GO:0000166: nucleotide binding1.16E-02
RankGO TermAdjusted P value
1GO:0022626: cytosolic ribosome2.29E-112
2GO:0005840: ribosome1.22E-91
3GO:0022625: cytosolic large ribosomal subunit2.42E-86
4GO:0022627: cytosolic small ribosomal subunit7.62E-55
5GO:0005737: cytoplasm1.36E-38
6GO:0005730: nucleolus9.32E-32
7GO:0005829: cytosol1.82E-29
8GO:0009506: plasmodesma6.82E-21
9GO:0005774: vacuolar membrane1.57E-14
10GO:0015935: small ribosomal subunit3.05E-13
11GO:0015934: large ribosomal subunit1.75E-12
12GO:0016020: membrane2.59E-12
13GO:0005618: cell wall1.05E-08
14GO:0005773: vacuole6.31E-08
15GO:0005886: plasma membrane2.15E-05
16GO:0009507: chloroplast4.22E-05
17GO:0005951: carbamoyl-phosphate synthase complex1.23E-04
18GO:0030686: 90S preribosome1.23E-04
19GO:0005622: intracellular1.40E-03
20GO:0005834: heterotrimeric G-protein complex5.16E-03
21GO:0042651: thylakoid membrane6.98E-03
22GO:0030529: intracellular ribonucleoprotein complex1.58E-02
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Gene type



Gene DE type