Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035264: multicellular organism growth0.00E+00
2GO:0010200: response to chitin1.57E-06
3GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening1.02E-05
4GO:0010117: photoprotection3.12E-05
5GO:0051865: protein autoubiquitination9.36E-05
6GO:2000280: regulation of root development1.06E-04
7GO:0055062: phosphate ion homeostasis1.19E-04
8GO:0001944: vasculature development2.82E-04
9GO:0007264: small GTPase mediated signal transduction4.19E-04
10GO:0009414: response to water deprivation5.95E-04
11GO:0006499: N-terminal protein myristoylation6.47E-04
12GO:0000209: protein polyubiquitination8.54E-04
13GO:0009644: response to high light intensity8.75E-04
14GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process9.40E-04
15GO:0009737: response to abscisic acid1.25E-03
16GO:0009451: RNA modification1.84E-03
17GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.95E-03
18GO:0015979: photosynthesis3.06E-03
19GO:0045892: negative regulation of transcription, DNA-templated3.20E-03
20GO:0009873: ethylene-activated signaling pathway4.34E-03
21GO:0009738: abscisic acid-activated signaling pathway5.27E-03
22GO:0009611: response to wounding5.48E-03
23GO:0006351: transcription, DNA-templated5.61E-03
24GO:0051301: cell division5.73E-03
25GO:0042742: defense response to bacterium8.81E-03
26GO:0006979: response to oxidative stress8.86E-03
27GO:0006355: regulation of transcription, DNA-templated9.48E-03
28GO:0009409: response to cold1.09E-02
29GO:0009651: response to salt stress2.08E-02
RankGO TermAdjusted P value
1GO:0001047: core promoter binding5.40E-06
2GO:0000175: 3'-5'-exoribonuclease activity1.60E-04
3GO:0004535: poly(A)-specific ribonuclease activity1.74E-04
4GO:0008408: 3'-5' exonuclease activity2.50E-04
5GO:0004540: ribonuclease activity2.50E-04
6GO:0008270: zinc ion binding2.05E-03
7GO:0003676: nucleic acid binding2.37E-03
8GO:0061630: ubiquitin protein ligase activity2.90E-03
9GO:0003700: transcription factor activity, sequence-specific DNA binding5.43E-03
10GO:0005525: GTP binding7.62E-03
11GO:0044212: transcription regulatory region DNA binding8.81E-03
12GO:0004842: ubiquitin-protein transferase activity1.11E-02
13GO:0046872: metal ion binding2.10E-02
14GO:0043565: sequence-specific DNA binding2.81E-02
15GO:0003723: RNA binding3.81E-02
RankGO TermAdjusted P value
1GO:0030014: CCR4-NOT complex1.91E-06
2GO:0005622: intracellular5.37E-04
3GO:0005634: nucleus9.79E-03
4GO:0005730: nucleolus1.28E-02
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Gene type



Gene DE type