co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034050: host programmed cell death induced by symbiont	0.00E+00
2	GO:0080056: petal vascular tissue pattern formation	0.00E+00
3	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
4	GO:0045047: protein targeting to ER	0.00E+00
5	GO:0071731: response to nitric oxide	0.00E+00
6	GO:0031564: transcription antitermination	0.00E+00
7	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
8	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
9	GO:0019307: mannose biosynthetic process	0.00E+00
10	GO:0072321: chaperone-mediated protein transport	0.00E+00
11	GO:0042254: ribosome biogenesis	2.32E-18
12	GO:0006412: translation	1.16E-15
13	GO:0046686: response to cadmium ion	4.19E-07
14	GO:0009651: response to salt stress	7.17E-06
15	GO:0006413: translational initiation	1.68E-05
16	GO:0000494: box C/D snoRNA 3'-end processing	4.74E-05
17	GO:1990258: histone glutamine methylation	4.74E-05
18	GO:0031120: snRNA pseudouridine synthesis	4.74E-05
19	GO:0031118: rRNA pseudouridine synthesis	4.74E-05
20	GO:0000027: ribosomal large subunit assembly	1.14E-04
21	GO:0045041: protein import into mitochondrial intermembrane space	1.17E-04
22	GO:0006452: translational frameshifting	1.17E-04
23	GO:0045905: positive regulation of translational termination	1.17E-04
24	GO:0045901: positive regulation of translational elongation	1.17E-04
25	GO:0007005: mitochondrion organization	1.57E-04
26	GO:0045039: protein import into mitochondrial inner membrane	2.00E-04
27	GO:0006013: mannose metabolic process	2.00E-04
28	GO:1902626: assembly of large subunit precursor of preribosome	2.00E-04
29	GO:0070301: cellular response to hydrogen peroxide	2.94E-04
30	GO:0051085: chaperone mediated protein folding requiring cofactor	2.94E-04
31	GO:0006241: CTP biosynthetic process	2.94E-04
32	GO:0006165: nucleoside diphosphate phosphorylation	2.94E-04
33	GO:0006228: UTP biosynthetic process	2.94E-04
34	GO:0051131: chaperone-mediated protein complex assembly	2.94E-04
35	GO:0006986: response to unfolded protein	2.94E-04
36	GO:0007004: telomere maintenance via telomerase	2.94E-04
37	GO:0009298: GDP-mannose biosynthetic process	2.94E-04
38	GO:0006183: GTP biosynthetic process	3.94E-04
39	GO:0031167: rRNA methylation	5.00E-04
40	GO:0006414: translational elongation	6.57E-04
41	GO:0042026: protein refolding	7.31E-04
42	GO:0006458: 'de novo' protein folding	7.31E-04
43	GO:0001522: pseudouridine synthesis	9.81E-04
44	GO:0000028: ribosomal small subunit assembly	9.81E-04
45	GO:0001510: RNA methylation	1.11E-03
46	GO:0006364: rRNA processing	1.18E-03
47	GO:0098656: anion transmembrane transport	1.25E-03
48	GO:0006189: 'de novo' IMP biosynthetic process	1.25E-03
49	GO:0012501: programmed cell death	1.86E-03
50	GO:0006820: anion transport	1.86E-03
51	GO:0010588: cotyledon vascular tissue pattern formation	2.03E-03
52	GO:0006626: protein targeting to mitochondrion	2.03E-03
53	GO:0009735: response to cytokinin	2.05E-03
54	GO:0048467: gynoecium development	2.20E-03
55	GO:0006541: glutamine metabolic process	2.20E-03
56	GO:0019853: L-ascorbic acid biosynthetic process	2.38E-03
57	GO:0006487: protein N-linked glycosylation	2.74E-03
58	GO:0006334: nucleosome assembly	3.12E-03
59	GO:0061077: chaperone-mediated protein folding	3.12E-03
60	GO:0006457: protein folding	3.18E-03
61	GO:0009617: response to bacterium	3.39E-03
62	GO:0008033: tRNA processing	4.15E-03
63	GO:0000413: protein peptidyl-prolyl isomerization	4.15E-03
64	GO:0010305: leaf vascular tissue pattern formation	4.37E-03
65	GO:0010197: polar nucleus fusion	4.37E-03
66	GO:0015986: ATP synthesis coupled proton transport	4.59E-03
67	GO:0032502: developmental process	5.28E-03
68	GO:0016049: cell growth	7.54E-03
69	GO:0009408: response to heat	7.99E-03
70	GO:0009631: cold acclimation	8.65E-03
71	GO:0048527: lateral root development	8.65E-03
72	GO:0010043: response to zinc ion	8.65E-03
73	GO:0006839: mitochondrial transport	1.01E-02
74	GO:0009744: response to sucrose	1.10E-02
75	GO:0000154: rRNA modification	1.20E-02
76	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.26E-02
77	GO:0009846: pollen germination	1.29E-02
78	GO:0010224: response to UV-B	1.39E-02
79	GO:0006417: regulation of translation	1.46E-02
80	GO:0048367: shoot system development	1.57E-02
81	GO:0009845: seed germination	2.16E-02
82	GO:0009790: embryo development	2.29E-02
83	GO:0006970: response to osmotic stress	3.70E-02
84	GO:0009723: response to ethylene	3.90E-02
85	GO:0009409: response to cold	3.90E-02
86	GO:0048366: leaf development	3.95E-02

Rank	GO Term	Adjusted P value
1	GO:0016018: cyclosporin A binding	0.00E+00
2	GO:0004615: phosphomannomutase activity	0.00E+00
3	GO:0034513: box H/ACA snoRNA binding	0.00E+00
4	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
5	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	1.27E-20
7	GO:0003746: translation elongation factor activity	1.25E-08
8	GO:0030515: snoRNA binding	5.62E-08
9	GO:0003729: mRNA binding	5.01E-06
10	GO:0005507: copper ion binding	6.93E-06
11	GO:0003743: translation initiation factor activity	2.64E-05
12	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	4.74E-05
13	GO:1990259: histone-glutamine methyltransferase activity	4.74E-05
14	GO:0070034: telomerase RNA binding	1.17E-04
15	GO:0051082: unfolded protein binding	1.43E-04
16	GO:0008649: rRNA methyltransferase activity	2.00E-04
17	GO:0004550: nucleoside diphosphate kinase activity	2.94E-04
18	GO:0031369: translation initiation factor binding	6.13E-04
19	GO:0016462: pyrophosphatase activity	6.13E-04
20	GO:0015288: porin activity	9.81E-04
21	GO:0043022: ribosome binding	9.81E-04
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.03E-03
23	GO:0008308: voltage-gated anion channel activity	1.11E-03
24	GO:0044183: protein binding involved in protein folding	1.70E-03
25	GO:0003723: RNA binding	1.85E-03
26	GO:0015114: phosphate ion transmembrane transporter activity	2.03E-03
27	GO:0008266: poly(U) RNA binding	2.20E-03
28	GO:0005528: FK506 binding	2.74E-03
29	GO:0051087: chaperone binding	2.93E-03
30	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.37E-03
31	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.81E-03
32	GO:0003924: GTPase activity	7.99E-03
33	GO:0050897: cobalt ion binding	8.65E-03
34	GO:0003697: single-stranded DNA binding	9.22E-03
35	GO:0042393: histone binding	1.01E-02
36	GO:0003690: double-stranded DNA binding	1.39E-02
37	GO:0019843: rRNA binding	2.05E-02
38	GO:0008565: protein transporter activity	2.33E-02
39	GO:0005515: protein binding	2.94E-02
40	GO:0005524: ATP binding	3.40E-02

Rank	GO Term	Adjusted P value
1	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
2	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
3	GO:0072589: box H/ACA scaRNP complex	0.00E+00
4	GO:0005730: nucleolus	3.09E-21
5	GO:0005840: ribosome	1.14E-19
6	GO:0022625: cytosolic large ribosomal subunit	1.09E-10
7	GO:0022626: cytosolic ribosome	1.24E-10
8	GO:0005774: vacuolar membrane	3.90E-09
9	GO:0022627: cytosolic small ribosomal subunit	1.41E-06
10	GO:0005773: vacuole	4.22E-06
11	GO:0005747: mitochondrial respiratory chain complex I	4.47E-06
12	GO:0031428: box C/D snoRNP complex	6.58E-06
13	GO:0009506: plasmodesma	2.07E-05
14	GO:0015030: Cajal body	3.50E-05
15	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	4.74E-05
16	GO:0005737: cytoplasm	4.91E-05
17	GO:0005852: eukaryotic translation initiation factor 3 complex	5.03E-05
18	GO:0032040: small-subunit processome	5.92E-05
19	GO:0005829: cytosol	8.50E-05
20	GO:0005618: cell wall	9.35E-05
21	GO:0005739: mitochondrion	9.99E-05
22	GO:0005759: mitochondrial matrix	2.67E-04
23	GO:0031429: box H/ACA snoRNP complex	2.94E-04
24	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	3.94E-04
25	GO:0015934: large ribosomal subunit	6.43E-04
26	GO:0005762: mitochondrial large ribosomal subunit	7.31E-04
27	GO:0046930: pore complex	1.11E-03
28	GO:0016020: membrane	1.76E-03
29	GO:0005753: mitochondrial proton-transporting ATP synthase complex	2.38E-03
30	GO:0005758: mitochondrial intermembrane space	2.74E-03
31	GO:0005741: mitochondrial outer membrane	3.12E-03
32	GO:0005743: mitochondrial inner membrane	7.43E-03
33	GO:0009536: plastid	3.54E-02
34	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.75E-02