GO Enrichment Analysis of Co-expressed Genes with
AT3G04260
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
2 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
3 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
4 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
5 | GO:0060416: response to growth hormone | 0.00E+00 |
6 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
7 | GO:0000372: Group I intron splicing | 0.00E+00 |
8 | GO:0006399: tRNA metabolic process | 0.00E+00 |
9 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
10 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
11 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 0.00E+00 |
12 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
13 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
14 | GO:0006412: translation | 3.77E-12 |
15 | GO:0032544: plastid translation | 1.44E-11 |
16 | GO:0042254: ribosome biogenesis | 2.60E-07 |
17 | GO:0015995: chlorophyll biosynthetic process | 3.62E-07 |
18 | GO:0016123: xanthophyll biosynthetic process | 1.53E-06 |
19 | GO:0009658: chloroplast organization | 2.93E-06 |
20 | GO:0009793: embryo development ending in seed dormancy | 4.72E-06 |
21 | GO:1901259: chloroplast rRNA processing | 5.09E-06 |
22 | GO:0010027: thylakoid membrane organization | 5.57E-06 |
23 | GO:0016120: carotene biosynthetic process | 1.23E-04 |
24 | GO:0032543: mitochondrial translation | 1.23E-04 |
25 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.23E-04 |
26 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.78E-04 |
27 | GO:0042372: phylloquinone biosynthetic process | 2.41E-04 |
28 | GO:0009306: protein secretion | 3.02E-04 |
29 | GO:0009790: embryo development | 3.20E-04 |
30 | GO:0016117: carotenoid biosynthetic process | 3.36E-04 |
31 | GO:0006438: valyl-tRNA aminoacylation | 3.57E-04 |
32 | GO:0000476: maturation of 4.5S rRNA | 3.57E-04 |
33 | GO:0000967: rRNA 5'-end processing | 3.57E-04 |
34 | GO:1903409: reactive oxygen species biosynthetic process | 3.57E-04 |
35 | GO:0043489: RNA stabilization | 3.57E-04 |
36 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 3.57E-04 |
37 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.57E-04 |
38 | GO:0006426: glycyl-tRNA aminoacylation | 3.57E-04 |
39 | GO:1904964: positive regulation of phytol biosynthetic process | 3.57E-04 |
40 | GO:0042371: vitamin K biosynthetic process | 3.57E-04 |
41 | GO:1902458: positive regulation of stomatal opening | 3.57E-04 |
42 | GO:0034337: RNA folding | 3.57E-04 |
43 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.57E-04 |
44 | GO:0006434: seryl-tRNA aminoacylation | 3.57E-04 |
45 | GO:0006353: DNA-templated transcription, termination | 3.92E-04 |
46 | GO:0015979: photosynthesis | 4.12E-04 |
47 | GO:0010206: photosystem II repair | 5.76E-04 |
48 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.77E-04 |
49 | GO:0018026: peptidyl-lysine monomethylation | 7.77E-04 |
50 | GO:0080148: negative regulation of response to water deprivation | 7.77E-04 |
51 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 7.77E-04 |
52 | GO:0034470: ncRNA processing | 7.77E-04 |
53 | GO:0043039: tRNA aminoacylation | 7.77E-04 |
54 | GO:0009773: photosynthetic electron transport in photosystem I | 9.13E-04 |
55 | GO:0019684: photosynthesis, light reaction | 9.13E-04 |
56 | GO:0006415: translational termination | 9.13E-04 |
57 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.04E-03 |
58 | GO:0006954: inflammatory response | 1.26E-03 |
59 | GO:0006518: peptide metabolic process | 1.26E-03 |
60 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.26E-03 |
61 | GO:0009226: nucleotide-sugar biosynthetic process | 1.81E-03 |
62 | GO:0006424: glutamyl-tRNA aminoacylation | 1.81E-03 |
63 | GO:0016556: mRNA modification | 1.81E-03 |
64 | GO:0046739: transport of virus in multicellular host | 1.81E-03 |
65 | GO:2001141: regulation of RNA biosynthetic process | 1.81E-03 |
66 | GO:0010239: chloroplast mRNA processing | 1.81E-03 |
67 | GO:0006418: tRNA aminoacylation for protein translation | 2.03E-03 |
68 | GO:0009451: RNA modification | 2.24E-03 |
69 | GO:0006749: glutathione metabolic process | 2.44E-03 |
70 | GO:0006808: regulation of nitrogen utilization | 2.44E-03 |
71 | GO:0009765: photosynthesis, light harvesting | 2.44E-03 |
72 | GO:0009247: glycolipid biosynthetic process | 3.11E-03 |
73 | GO:0000304: response to singlet oxygen | 3.11E-03 |
74 | GO:0006564: L-serine biosynthetic process | 3.11E-03 |
75 | GO:0010236: plastoquinone biosynthetic process | 3.11E-03 |
76 | GO:0008033: tRNA processing | 3.38E-03 |
77 | GO:0000413: protein peptidyl-prolyl isomerization | 3.38E-03 |
78 | GO:0016554: cytidine to uridine editing | 3.85E-03 |
79 | GO:0032973: amino acid export | 3.85E-03 |
80 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.85E-03 |
81 | GO:0010190: cytochrome b6f complex assembly | 3.85E-03 |
82 | GO:0010405: arabinogalactan protein metabolic process | 3.85E-03 |
83 | GO:0042026: protein refolding | 4.64E-03 |
84 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.64E-03 |
85 | GO:0006458: 'de novo' protein folding | 4.64E-03 |
86 | GO:0010019: chloroplast-nucleus signaling pathway | 4.64E-03 |
87 | GO:0009955: adaxial/abaxial pattern specification | 4.64E-03 |
88 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 5.48E-03 |
89 | GO:0006821: chloride transport | 5.48E-03 |
90 | GO:0006400: tRNA modification | 5.48E-03 |
91 | GO:0006401: RNA catabolic process | 5.48E-03 |
92 | GO:0045995: regulation of embryonic development | 5.48E-03 |
93 | GO:0009395: phospholipid catabolic process | 5.48E-03 |
94 | GO:0009772: photosynthetic electron transport in photosystem II | 5.48E-03 |
95 | GO:0043090: amino acid import | 5.48E-03 |
96 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.16E-03 |
97 | GO:0006402: mRNA catabolic process | 6.37E-03 |
98 | GO:0042255: ribosome assembly | 6.37E-03 |
99 | GO:0006605: protein targeting | 6.37E-03 |
100 | GO:0019375: galactolipid biosynthetic process | 6.37E-03 |
101 | GO:0009704: de-etiolation | 6.37E-03 |
102 | GO:2000070: regulation of response to water deprivation | 6.37E-03 |
103 | GO:0016559: peroxisome fission | 6.37E-03 |
104 | GO:0048564: photosystem I assembly | 6.37E-03 |
105 | GO:0010497: plasmodesmata-mediated intercellular transport | 7.30E-03 |
106 | GO:0009657: plastid organization | 7.30E-03 |
107 | GO:0017004: cytochrome complex assembly | 7.30E-03 |
108 | GO:0071482: cellular response to light stimulus | 7.30E-03 |
109 | GO:0080144: amino acid homeostasis | 8.29E-03 |
110 | GO:0006783: heme biosynthetic process | 8.29E-03 |
111 | GO:0000373: Group II intron splicing | 8.29E-03 |
112 | GO:0009051: pentose-phosphate shunt, oxidative branch | 8.29E-03 |
113 | GO:0018298: protein-chromophore linkage | 8.51E-03 |
114 | GO:1900865: chloroplast RNA modification | 9.31E-03 |
115 | GO:0031425: chloroplast RNA processing | 9.31E-03 |
116 | GO:0010205: photoinhibition | 9.31E-03 |
117 | GO:0009407: toxin catabolic process | 9.39E-03 |
118 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.04E-02 |
119 | GO:0006397: mRNA processing | 1.13E-02 |
120 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.15E-02 |
121 | GO:0009073: aromatic amino acid family biosynthetic process | 1.15E-02 |
122 | GO:0006352: DNA-templated transcription, initiation | 1.15E-02 |
123 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.15E-02 |
124 | GO:0006457: protein folding | 1.18E-02 |
125 | GO:0045037: protein import into chloroplast stroma | 1.27E-02 |
126 | GO:0010628: positive regulation of gene expression | 1.39E-02 |
127 | GO:0006006: glucose metabolic process | 1.39E-02 |
128 | GO:0009767: photosynthetic electron transport chain | 1.39E-02 |
129 | GO:0010020: chloroplast fission | 1.51E-02 |
130 | GO:0048768: root hair cell tip growth | 1.51E-02 |
131 | GO:0009636: response to toxic substance | 1.57E-02 |
132 | GO:0090351: seedling development | 1.64E-02 |
133 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.77E-02 |
134 | GO:0000027: ribosomal large subunit assembly | 1.90E-02 |
135 | GO:0061077: chaperone-mediated protein folding | 2.18E-02 |
136 | GO:0031408: oxylipin biosynthetic process | 2.18E-02 |
137 | GO:0009735: response to cytokinin | 2.19E-02 |
138 | GO:0016226: iron-sulfur cluster assembly | 2.33E-02 |
139 | GO:0006730: one-carbon metabolic process | 2.33E-02 |
140 | GO:0007005: mitochondrion organization | 2.33E-02 |
141 | GO:0006396: RNA processing | 2.77E-02 |
142 | GO:0006508: proteolysis | 3.07E-02 |
143 | GO:0006814: sodium ion transport | 3.27E-02 |
144 | GO:0002229: defense response to oomycetes | 3.61E-02 |
145 | GO:0000302: response to reactive oxygen species | 3.61E-02 |
146 | GO:0032502: developmental process | 3.78E-02 |
147 | GO:0007264: small GTPase mediated signal transduction | 3.78E-02 |
148 | GO:0030163: protein catabolic process | 3.96E-02 |
149 | GO:0009409: response to cold | 4.17E-02 |
150 | GO:0040008: regulation of growth | 4.42E-02 |
151 | GO:0007623: circadian rhythm | 4.63E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
2 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
5 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
6 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
7 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
8 | GO:0005048: signal sequence binding | 0.00E+00 |
9 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
10 | GO:0019843: rRNA binding | 2.68E-22 |
11 | GO:0003735: structural constituent of ribosome | 1.37E-13 |
12 | GO:0016851: magnesium chelatase activity | 2.35E-07 |
13 | GO:0016149: translation release factor activity, codon specific | 4.45E-05 |
14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.18E-05 |
15 | GO:0003723: RNA binding | 1.55E-04 |
16 | GO:0051920: peroxiredoxin activity | 2.41E-04 |
17 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 3.57E-04 |
18 | GO:0001530: lipopolysaccharide binding | 3.57E-04 |
19 | GO:0004828: serine-tRNA ligase activity | 3.57E-04 |
20 | GO:0004853: uroporphyrinogen decarboxylase activity | 3.57E-04 |
21 | GO:0045485: omega-6 fatty acid desaturase activity | 3.57E-04 |
22 | GO:0004832: valine-tRNA ligase activity | 3.57E-04 |
23 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.57E-04 |
24 | GO:0004820: glycine-tRNA ligase activity | 3.57E-04 |
25 | GO:0004328: formamidase activity | 3.57E-04 |
26 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 3.57E-04 |
27 | GO:0016209: antioxidant activity | 3.92E-04 |
28 | GO:0003747: translation release factor activity | 5.76E-04 |
29 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 7.77E-04 |
30 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 7.77E-04 |
31 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 7.77E-04 |
32 | GO:0004617: phosphoglycerate dehydrogenase activity | 7.77E-04 |
33 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.77E-04 |
34 | GO:0008236: serine-type peptidase activity | 1.13E-03 |
35 | GO:0017150: tRNA dihydrouridine synthase activity | 1.26E-03 |
36 | GO:0003913: DNA photolyase activity | 1.26E-03 |
37 | GO:0002161: aminoacyl-tRNA editing activity | 1.26E-03 |
38 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.26E-03 |
39 | GO:0030267: glyoxylate reductase (NADP) activity | 1.26E-03 |
40 | GO:0008266: poly(U) RNA binding | 1.33E-03 |
41 | GO:0004222: metalloendopeptidase activity | 1.36E-03 |
42 | GO:0035250: UDP-galactosyltransferase activity | 1.81E-03 |
43 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.81E-03 |
44 | GO:0043023: ribosomal large subunit binding | 1.81E-03 |
45 | GO:0008097: 5S rRNA binding | 1.81E-03 |
46 | GO:0008508: bile acid:sodium symporter activity | 1.81E-03 |
47 | GO:0001872: (1->3)-beta-D-glucan binding | 1.81E-03 |
48 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.81E-03 |
49 | GO:0016987: sigma factor activity | 2.44E-03 |
50 | GO:0043495: protein anchor | 2.44E-03 |
51 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 2.44E-03 |
52 | GO:0004659: prenyltransferase activity | 2.44E-03 |
53 | GO:0016279: protein-lysine N-methyltransferase activity | 2.44E-03 |
54 | GO:0001053: plastid sigma factor activity | 2.44E-03 |
55 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.44E-03 |
56 | GO:0004045: aminoacyl-tRNA hydrolase activity | 2.44E-03 |
57 | GO:0004812: aminoacyl-tRNA ligase activity | 3.13E-03 |
58 | GO:0004519: endonuclease activity | 3.19E-03 |
59 | GO:0004130: cytochrome-c peroxidase activity | 3.85E-03 |
60 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.85E-03 |
61 | GO:0016208: AMP binding | 3.85E-03 |
62 | GO:0005247: voltage-gated chloride channel activity | 3.85E-03 |
63 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.85E-03 |
64 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.64E-03 |
65 | GO:0015631: tubulin binding | 4.64E-03 |
66 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.64E-03 |
67 | GO:0009881: photoreceptor activity | 5.48E-03 |
68 | GO:0019899: enzyme binding | 5.48E-03 |
69 | GO:0004033: aldo-keto reductase (NADP) activity | 6.37E-03 |
70 | GO:0008312: 7S RNA binding | 6.37E-03 |
71 | GO:0003729: mRNA binding | 6.73E-03 |
72 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.09E-03 |
73 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.51E-03 |
74 | GO:0003993: acid phosphatase activity | 1.13E-02 |
75 | GO:0044183: protein binding involved in protein folding | 1.15E-02 |
76 | GO:0004364: glutathione transferase activity | 1.34E-02 |
77 | GO:0000175: 3'-5'-exoribonuclease activity | 1.39E-02 |
78 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.51E-02 |
79 | GO:0004601: peroxidase activity | 1.80E-02 |
80 | GO:0016788: hydrolase activity, acting on ester bonds | 1.84E-02 |
81 | GO:0005528: FK506 binding | 1.90E-02 |
82 | GO:0051536: iron-sulfur cluster binding | 1.90E-02 |
83 | GO:0003690: double-stranded DNA binding | 1.95E-02 |
84 | GO:0043424: protein histidine kinase binding | 2.04E-02 |
85 | GO:0004176: ATP-dependent peptidase activity | 2.18E-02 |
86 | GO:0022891: substrate-specific transmembrane transporter activity | 2.48E-02 |
87 | GO:0003727: single-stranded RNA binding | 2.63E-02 |
88 | GO:0008080: N-acetyltransferase activity | 3.11E-02 |
89 | GO:0003713: transcription coactivator activity | 3.11E-02 |
90 | GO:0010181: FMN binding | 3.27E-02 |
91 | GO:0004252: serine-type endopeptidase activity | 3.73E-02 |
92 | GO:0003924: GTPase activity | 3.83E-02 |
93 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.32E-02 |
94 | GO:0008237: metallopeptidase activity | 4.32E-02 |
95 | GO:0016597: amino acid binding | 4.50E-02 |
96 | GO:0016168: chlorophyll binding | 4.88E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0000408: EKC/KEOPS complex | 0.00E+00 |
2 | GO:0009507: chloroplast | 2.00E-72 |
3 | GO:0009570: chloroplast stroma | 1.39E-47 |
4 | GO:0009941: chloroplast envelope | 2.02E-32 |
5 | GO:0009535: chloroplast thylakoid membrane | 2.53E-19 |
6 | GO:0009579: thylakoid | 3.06E-15 |
7 | GO:0005840: ribosome | 4.78E-13 |
8 | GO:0009543: chloroplast thylakoid lumen | 6.06E-13 |
9 | GO:0009534: chloroplast thylakoid | 1.33E-09 |
10 | GO:0031977: thylakoid lumen | 2.96E-09 |
11 | GO:0010007: magnesium chelatase complex | 4.86E-08 |
12 | GO:0009533: chloroplast stromal thylakoid | 8.13E-06 |
13 | GO:0031969: chloroplast membrane | 5.31E-05 |
14 | GO:0000311: plastid large ribosomal subunit | 6.61E-05 |
15 | GO:0009536: plastid | 1.34E-04 |
16 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 3.57E-04 |
17 | GO:0009344: nitrite reductase complex [NAD(P)H] | 3.57E-04 |
18 | GO:0009547: plastid ribosome | 3.57E-04 |
19 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.76E-04 |
20 | GO:0080085: signal recognition particle, chloroplast targeting | 7.77E-04 |
21 | GO:0030529: intracellular ribonucleoprotein complex | 8.65E-04 |
22 | GO:0009706: chloroplast inner membrane | 9.44E-04 |
23 | GO:0033281: TAT protein transport complex | 1.26E-03 |
24 | GO:0030095: chloroplast photosystem II | 1.33E-03 |
25 | GO:0000312: plastid small ribosomal subunit | 1.33E-03 |
26 | GO:0009654: photosystem II oxygen evolving complex | 2.03E-03 |
27 | GO:0042651: thylakoid membrane | 2.03E-03 |
28 | GO:0034707: chloride channel complex | 3.85E-03 |
29 | GO:0019898: extrinsic component of membrane | 4.20E-03 |
30 | GO:0022626: cytosolic ribosome | 6.96E-03 |
31 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 7.30E-03 |
32 | GO:0005763: mitochondrial small ribosomal subunit | 8.29E-03 |
33 | GO:0009707: chloroplast outer membrane | 8.51E-03 |
34 | GO:0015934: large ribosomal subunit | 9.85E-03 |
35 | GO:0043231: intracellular membrane-bounded organelle | 1.23E-02 |
36 | GO:0032040: small-subunit processome | 1.27E-02 |
37 | GO:0046658: anchored component of plasma membrane | 1.48E-02 |
38 | GO:0043234: protein complex | 1.77E-02 |
39 | GO:0015935: small ribosomal subunit | 2.18E-02 |
40 | GO:0009532: plastid stroma | 2.18E-02 |
41 | GO:0022625: cytosolic large ribosomal subunit | 2.52E-02 |
42 | GO:0010287: plastoglobule | 3.19E-02 |
43 | GO:0009523: photosystem II | 3.44E-02 |
44 | GO:0005759: mitochondrial matrix | 4.22E-02 |
45 | GO:0009295: nucleoid | 4.32E-02 |
46 | GO:0005778: peroxisomal membrane | 4.32E-02 |