co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G04120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031564: transcription antitermination	0.00E+00
2	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
3	GO:0006721: terpenoid metabolic process	0.00E+00
4	GO:0019307: mannose biosynthetic process	0.00E+00
5	GO:0006042: glucosamine biosynthetic process	0.00E+00
6	GO:1901137: carbohydrate derivative biosynthetic process	0.00E+00
7	GO:0045047: protein targeting to ER	0.00E+00
8	GO:0039694: viral RNA genome replication	0.00E+00
9	GO:0046686: response to cadmium ion	9.03E-09
10	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.52E-06
11	GO:0018279: protein N-linked glycosylation via asparagine	3.89E-05
12	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.07E-04
13	GO:0009651: response to salt stress	1.22E-04
14	GO:0006605: protein targeting	1.37E-04
15	GO:0033306: phytol metabolic process	1.77E-04
16	GO:0019673: GDP-mannose metabolic process	1.77E-04
17	GO:0042964: thioredoxin reduction	1.77E-04
18	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.77E-04
19	GO:0080120: CAAX-box protein maturation	1.77E-04
20	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.77E-04
21	GO:0071586: CAAX-box protein processing	1.77E-04
22	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.77E-04
23	GO:0015760: glucose-6-phosphate transport	1.77E-04
24	GO:0016487: farnesol metabolic process	1.77E-04
25	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.77E-04
26	GO:0045454: cell redox homeostasis	3.11E-04
27	GO:0015865: purine nucleotide transport	4.01E-04
28	GO:0015712: hexose phosphate transport	4.01E-04
29	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	4.01E-04
30	GO:0009805: coumarin biosynthetic process	4.01E-04
31	GO:0010372: positive regulation of gibberellin biosynthetic process	4.01E-04
32	GO:0006099: tricarboxylic acid cycle	4.86E-04
33	GO:0006511: ubiquitin-dependent protein catabolic process	5.23E-04
34	GO:0015714: phosphoenolpyruvate transport	6.55E-04
35	GO:0032940: secretion by cell	6.55E-04
36	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	6.55E-04
37	GO:0006013: mannose metabolic process	6.55E-04
38	GO:0055074: calcium ion homeostasis	6.55E-04
39	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	6.55E-04
40	GO:0035436: triose phosphate transmembrane transport	6.55E-04
41	GO:0006011: UDP-glucose metabolic process	6.55E-04
42	GO:0006487: protein N-linked glycosylation	6.94E-04
43	GO:0033014: tetrapyrrole biosynthetic process	9.34E-04
44	GO:0010116: positive regulation of abscisic acid biosynthetic process	9.34E-04
45	GO:0009298: GDP-mannose biosynthetic process	9.34E-04
46	GO:0046902: regulation of mitochondrial membrane permeability	9.34E-04
47	GO:0072334: UDP-galactose transmembrane transport	9.34E-04
48	GO:0007276: gamete generation	9.34E-04
49	GO:0009306: protein secretion	1.07E-03
50	GO:0000460: maturation of 5.8S rRNA	1.24E-03
51	GO:0015713: phosphoglycerate transport	1.24E-03
52	GO:0000956: nuclear-transcribed mRNA catabolic process	1.24E-03
53	GO:0010109: regulation of photosynthesis	1.24E-03
54	GO:0010483: pollen tube reception	1.24E-03
55	GO:0006536: glutamate metabolic process	1.24E-03
56	GO:0015986: ATP synthesis coupled proton transport	1.44E-03
57	GO:0000304: response to singlet oxygen	1.57E-03
58	GO:0009697: salicylic acid biosynthetic process	1.57E-03
59	GO:0046283: anthocyanin-containing compound metabolic process	1.57E-03
60	GO:0045116: protein neddylation	1.57E-03
61	GO:0006465: signal peptide processing	1.57E-03
62	GO:0007035: vacuolar acidification	1.94E-03
63	GO:0009643: photosynthetic acclimation	1.94E-03
64	GO:0000470: maturation of LSU-rRNA	1.94E-03
65	GO:0042372: phylloquinone biosynthetic process	2.32E-03
66	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.32E-03
67	GO:0009423: chorismate biosynthetic process	2.32E-03
68	GO:1902074: response to salt	2.74E-03
69	GO:0006402: mRNA catabolic process	3.17E-03
70	GO:0030091: protein repair	3.17E-03
71	GO:0006102: isocitrate metabolic process	3.17E-03
72	GO:0009617: response to bacterium	3.55E-03
73	GO:0019430: removal of superoxide radicals	3.63E-03
74	GO:0010204: defense response signaling pathway, resistance gene-independent	3.63E-03
75	GO:0030968: endoplasmic reticulum unfolded protein response	3.63E-03
76	GO:0009699: phenylpropanoid biosynthetic process	3.63E-03
77	GO:0019432: triglyceride biosynthetic process	4.10E-03
78	GO:0006783: heme biosynthetic process	4.10E-03
79	GO:0098656: anion transmembrane transport	4.10E-03
80	GO:0046685: response to arsenic-containing substance	4.10E-03
81	GO:0009735: response to cytokinin	4.69E-03
82	GO:0007064: mitotic sister chromatid cohesion	5.11E-03
83	GO:0009688: abscisic acid biosynthetic process	5.11E-03
84	GO:0009073: aromatic amino acid family biosynthetic process	5.65E-03
85	GO:0006415: translational termination	5.65E-03
86	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.20E-03
87	GO:0006790: sulfur compound metabolic process	6.20E-03
88	GO:0006820: anion transport	6.20E-03
89	GO:0009846: pollen germination	6.32E-03
90	GO:0015031: protein transport	6.57E-03
91	GO:0051603: proteolysis involved in cellular protein catabolic process	7.02E-03
92	GO:0009409: response to cold	7.34E-03
93	GO:0034605: cellular response to heat	7.37E-03
94	GO:0006457: protein folding	7.95E-03
95	GO:0046688: response to copper ion	7.98E-03
96	GO:0019853: L-ascorbic acid biosynthetic process	7.98E-03
97	GO:0046854: phosphatidylinositol phosphorylation	7.98E-03
98	GO:0007030: Golgi organization	7.98E-03
99	GO:0034976: response to endoplasmic reticulum stress	8.61E-03
100	GO:0009553: embryo sac development	9.37E-03
101	GO:0006825: copper ion transport	9.92E-03
102	GO:0051302: regulation of cell division	9.92E-03
103	GO:0007131: reciprocal meiotic recombination	1.13E-02
104	GO:0031348: negative regulation of defense response	1.13E-02
105	GO:0019748: secondary metabolic process	1.13E-02
106	GO:0042147: retrograde transport, endosome to Golgi	1.35E-02
107	GO:0010501: RNA secondary structure unwinding	1.43E-02
108	GO:0000413: protein peptidyl-prolyl isomerization	1.43E-02
109	GO:0010118: stomatal movement	1.43E-02
110	GO:0015991: ATP hydrolysis coupled proton transport	1.43E-02
111	GO:0009414: response to water deprivation	1.51E-02
112	GO:0006979: response to oxidative stress	1.58E-02
113	GO:0009749: response to glucose	1.66E-02
114	GO:0009851: auxin biosynthetic process	1.66E-02
115	GO:0006891: intra-Golgi vesicle-mediated transport	1.75E-02
116	GO:0006635: fatty acid beta-oxidation	1.75E-02
117	GO:0080156: mitochondrial mRNA modification	1.75E-02
118	GO:0031047: gene silencing by RNA	1.83E-02
119	GO:0030163: protein catabolic process	1.91E-02
120	GO:0010252: auxin homeostasis	2.00E-02
121	GO:0009555: pollen development	2.20E-02
122	GO:0001666: response to hypoxia	2.27E-02
123	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.36E-02
124	GO:0006906: vesicle fusion	2.45E-02
125	GO:0009627: systemic acquired resistance	2.45E-02
126	GO:0009826: unidimensional cell growth	2.50E-02
127	GO:0015995: chlorophyll biosynthetic process	2.55E-02
128	GO:0016049: cell growth	2.64E-02
129	GO:0016311: dephosphorylation	2.64E-02
130	GO:0042254: ribosome biogenesis	2.65E-02
131	GO:0006970: response to osmotic stress	2.80E-02
132	GO:0009832: plant-type cell wall biogenesis	2.84E-02
133	GO:0006499: N-terminal protein myristoylation	2.94E-02
134	GO:0009407: toxin catabolic process	2.94E-02
135	GO:0009631: cold acclimation	3.04E-02
136	GO:0010043: response to zinc ion	3.04E-02
137	GO:0080167: response to karrikin	3.22E-02
138	GO:0016051: carbohydrate biosynthetic process	3.24E-02
139	GO:0009853: photorespiration	3.24E-02
140	GO:0006839: mitochondrial transport	3.56E-02
141	GO:0006887: exocytosis	3.67E-02
142	GO:0008283: cell proliferation	3.88E-02
143	GO:0009744: response to sucrose	3.88E-02
144	GO:0006886: intracellular protein transport	3.97E-02
145	GO:0042546: cell wall biogenesis	4.00E-02
146	GO:0009636: response to toxic substance	4.22E-02
147	GO:0009965: leaf morphogenesis	4.22E-02
148	GO:0032259: methylation	4.53E-02
149	GO:0009664: plant-type cell wall organization	4.56E-02
150	GO:0009809: lignin biosynthetic process	4.80E-02
151	GO:0006486: protein glycosylation	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0050220: prostaglandin-E synthase activity	0.00E+00
2	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
3	GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity	0.00E+00
4	GO:0004107: chorismate synthase activity	0.00E+00
5	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
6	GO:0047886: farnesol dehydrogenase activity	0.00E+00
7	GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	0.00E+00
8	GO:0004615: phosphomannomutase activity	0.00E+00
9	GO:0004164: diphthine synthase activity	0.00E+00
10	GO:0004298: threonine-type endopeptidase activity	2.13E-10
11	GO:0008233: peptidase activity	1.26E-07
12	GO:0043021: ribonucleoprotein complex binding	1.52E-06
13	GO:0003746: translation elongation factor activity	3.64E-05
14	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.89E-05
15	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.07E-04
16	GO:0005525: GTP binding	1.74E-04
17	GO:0015157: oligosaccharide transmembrane transporter activity	1.77E-04
18	GO:0004325: ferrochelatase activity	1.77E-04
19	GO:0048037: cofactor binding	1.77E-04
20	GO:0008909: isochorismate synthase activity	1.77E-04
21	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.77E-04
22	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	1.77E-04
23	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.77E-04
24	GO:0097367: carbohydrate derivative binding	1.77E-04
25	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.77E-04
26	GO:0000166: nucleotide binding	2.76E-04
27	GO:0004129: cytochrome-c oxidase activity	3.42E-04
28	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.42E-04
29	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.01E-04
30	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.01E-04
31	GO:0019781: NEDD8 activating enzyme activity	4.01E-04
32	GO:0015152: glucose-6-phosphate transmembrane transporter activity	4.01E-04
33	GO:0005507: copper ion binding	5.75E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	6.55E-04
35	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.55E-04
36	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	6.55E-04
37	GO:0071917: triose-phosphate transmembrane transporter activity	6.55E-04
38	GO:0016531: copper chaperone activity	6.55E-04
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.34E-04
40	GO:0016149: translation release factor activity, codon specific	9.34E-04
41	GO:0005460: UDP-glucose transmembrane transporter activity	9.34E-04
42	GO:0004351: glutamate decarboxylase activity	9.34E-04
43	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.34E-04
44	GO:0004031: aldehyde oxidase activity	1.24E-03
45	GO:0050302: indole-3-acetaldehyde oxidase activity	1.24E-03
46	GO:0016004: phospholipase activator activity	1.24E-03
47	GO:0015120: phosphoglycerate transmembrane transporter activity	1.24E-03
48	GO:0005452: inorganic anion exchanger activity	1.57E-03
49	GO:0005471: ATP:ADP antiporter activity	1.57E-03
50	GO:0015301: anion:anion antiporter activity	1.57E-03
51	GO:0005459: UDP-galactose transmembrane transporter activity	1.57E-03
52	GO:0008641: small protein activating enzyme activity	1.57E-03
53	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.94E-03
54	GO:0003924: GTPase activity	2.25E-03
55	GO:0004144: diacylglycerol O-acyltransferase activity	2.32E-03
56	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.32E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.32E-03
58	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.32E-03
59	GO:0009055: electron carrier activity	2.50E-03
60	GO:0004004: ATP-dependent RNA helicase activity	2.80E-03
61	GO:0015288: porin activity	3.17E-03
62	GO:0050897: cobalt ion binding	3.57E-03
63	GO:0008135: translation factor activity, RNA binding	3.63E-03
64	GO:0008308: voltage-gated anion channel activity	3.63E-03
65	GO:0003697: single-stranded DNA binding	3.91E-03
66	GO:0003747: translation release factor activity	4.10E-03
67	GO:0008171: O-methyltransferase activity	5.11E-03
68	GO:0051537: 2 iron, 2 sulfur cluster binding	5.44E-03
69	GO:0005315: inorganic phosphate transmembrane transporter activity	6.78E-03
70	GO:0015114: phosphate ion transmembrane transporter activity	6.78E-03
71	GO:0008266: poly(U) RNA binding	7.37E-03
72	GO:0004175: endopeptidase activity	7.37E-03
73	GO:0004190: aspartic-type endopeptidase activity	7.98E-03
74	GO:0051536: iron-sulfur cluster binding	9.26E-03
75	GO:0051082: unfolded protein binding	9.66E-03
76	GO:0016746: transferase activity, transferring acyl groups	9.95E-03
77	GO:0004386: helicase activity	1.05E-02
78	GO:0004540: ribonuclease activity	1.06E-02
79	GO:0016779: nucleotidyltransferase activity	1.13E-02
80	GO:0003756: protein disulfide isomerase activity	1.27E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.50E-02
82	GO:0010181: FMN binding	1.58E-02
83	GO:0050662: coenzyme binding	1.58E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	1.58E-02
85	GO:0004518: nuclease activity	1.83E-02
86	GO:0008483: transaminase activity	2.09E-02
87	GO:0051213: dioxygenase activity	2.27E-02
88	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.74E-02
89	GO:0004222: metalloendopeptidase activity	2.94E-02
90	GO:0050660: flavin adenine dinucleotide binding	3.00E-02
91	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
92	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.24E-02
93	GO:0000149: SNARE binding	3.45E-02
94	GO:0004364: glutathione transferase activity	3.78E-02
95	GO:0005484: SNAP receptor activity	3.88E-02
96	GO:0003735: structural constituent of ribosome	4.29E-02
97	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.33E-02
98	GO:0051287: NAD binding	4.45E-02
99	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.80E-02
100	GO:0003690: double-stranded DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0005783: endoplasmic reticulum	6.61E-11
3	GO:0005839: proteasome core complex	2.13E-10
4	GO:0005774: vacuolar membrane	1.64E-09
5	GO:0000502: proteasome complex	8.57E-09
6	GO:0019773: proteasome core complex, alpha-subunit complex	2.54E-08
7	GO:0005739: mitochondrion	1.19E-06
8	GO:0005829: cytosol	1.48E-06
9	GO:0070545: PeBoW complex	1.52E-06
10	GO:0005773: vacuole	8.10E-06
11	GO:0005788: endoplasmic reticulum lumen	1.47E-05
12	GO:0005750: mitochondrial respiratory chain complex III	2.03E-05
13	GO:0008250: oligosaccharyltransferase complex	3.89E-05
14	GO:0030687: preribosome, large subunit precursor	1.07E-04
15	GO:0016442: RISC complex	1.77E-04
16	GO:0005787: signal peptidase complex	1.77E-04
17	GO:0005740: mitochondrial envelope	2.95E-04
18	GO:0005759: mitochondrial matrix	4.01E-04
19	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	4.01E-04
20	GO:0045254: pyruvate dehydrogenase complex	4.01E-04
21	GO:0009507: chloroplast	5.51E-04
22	GO:0030176: integral component of endoplasmic reticulum membrane	5.64E-04
23	GO:0005753: mitochondrial proton-transporting ATP synthase complex	5.64E-04
24	GO:0005758: mitochondrial intermembrane space	6.94E-04
25	GO:1990726: Lsm1-7-Pat1 complex	9.34E-04
26	GO:0022626: cytosolic ribosome	1.16E-03
27	GO:0005747: mitochondrial respiratory chain complex I	1.17E-03
28	GO:0030660: Golgi-associated vesicle membrane	1.24E-03
29	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.24E-03
30	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.24E-03
31	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.57E-03
32	GO:0005746: mitochondrial respiratory chain	1.57E-03
33	GO:0032588: trans-Golgi network membrane	1.94E-03
34	GO:0005623: cell	1.95E-03
35	GO:0005762: mitochondrial large ribosomal subunit	2.32E-03
36	GO:0030173: integral component of Golgi membrane	2.32E-03
37	GO:0009506: plasmodesma	2.57E-03
38	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.17E-03
39	GO:0045273: respiratory chain complex II	3.17E-03
40	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.17E-03
41	GO:0005688: U6 snRNP	3.17E-03
42	GO:0005730: nucleolus	3.25E-03
43	GO:0046930: pore complex	3.63E-03
44	GO:0046540: U4/U6 x U5 tri-snRNP complex	3.63E-03
45	GO:0031901: early endosome membrane	4.10E-03
46	GO:0031090: organelle membrane	4.10E-03
47	GO:0010494: cytoplasmic stress granule	4.10E-03
48	GO:0048471: perinuclear region of cytoplasm	5.65E-03
49	GO:0005765: lysosomal membrane	5.65E-03
50	GO:0005852: eukaryotic translation initiation factor 3 complex	5.65E-03
51	GO:0005834: heterotrimeric G-protein complex	8.55E-03
52	GO:0043234: protein complex	8.61E-03
53	GO:0005789: endoplasmic reticulum membrane	9.05E-03
54	GO:0045271: respiratory chain complex I	9.92E-03
55	GO:0070469: respiratory chain	9.92E-03
56	GO:0005741: mitochondrial outer membrane	1.06E-02
57	GO:0005794: Golgi apparatus	1.40E-02
58	GO:0005618: cell wall	1.70E-02
59	GO:0009536: plastid	2.12E-02
60	GO:0000932: P-body	2.27E-02
61	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.85E-02
62	GO:0000325: plant-type vacuole	3.04E-02
63	GO:0031969: chloroplast membrane	3.22E-02
64	GO:0031201: SNARE complex	3.67E-02
65	GO:0048046: apoplast	3.93E-02
66	GO:0005886: plasma membrane	4.37E-02
67	GO:0005743: mitochondrial inner membrane	4.40E-02
68	GO:0031966: mitochondrial membrane	4.56E-02