Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071327: cellular response to trehalose stimulus0.00E+00
2GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
3GO:0070212: protein poly-ADP-ribosylation0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0045792: negative regulation of cell size0.00E+00
6GO:1900367: positive regulation of defense response to insect0.00E+00
7GO:0080052: response to histidine0.00E+00
8GO:0080053: response to phenylalanine0.00E+00
9GO:0002376: immune system process0.00E+00
10GO:0006983: ER overload response0.00E+00
11GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
12GO:0010200: response to chitin1.67E-10
13GO:0031349: positive regulation of defense response1.62E-07
14GO:0009816: defense response to bacterium, incompatible interaction3.97E-07
15GO:0009617: response to bacterium1.46E-06
16GO:0080142: regulation of salicylic acid biosynthetic process2.92E-06
17GO:0009626: plant-type hypersensitive response6.12E-06
18GO:0010942: positive regulation of cell death7.64E-06
19GO:0006952: defense response8.04E-06
20GO:0043562: cellular response to nitrogen levels2.60E-05
21GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.04E-05
22GO:1901183: positive regulation of camalexin biosynthetic process5.18E-05
23GO:0009270: response to humidity5.18E-05
24GO:0060862: negative regulation of floral organ abscission5.18E-05
25GO:0002237: response to molecule of bacterial origin9.00E-05
26GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.27E-04
27GO:0010618: aerenchyma formation1.27E-04
28GO:0006212: uracil catabolic process1.27E-04
29GO:0043066: negative regulation of apoptotic process1.27E-04
30GO:0019483: beta-alanine biosynthetic process1.27E-04
31GO:0042939: tripeptide transport1.27E-04
32GO:0019725: cellular homeostasis1.27E-04
33GO:0009751: response to salicylic acid1.63E-04
34GO:0071456: cellular response to hypoxia1.77E-04
35GO:0009625: response to insect1.94E-04
36GO:0042742: defense response to bacterium2.16E-04
37GO:0048281: inflorescence morphogenesis2.17E-04
38GO:0010581: regulation of starch biosynthetic process2.17E-04
39GO:0045793: positive regulation of cell size2.17E-04
40GO:0010186: positive regulation of cellular defense response2.17E-04
41GO:0009399: nitrogen fixation3.17E-04
42GO:0010193: response to ozone3.35E-04
43GO:0010150: leaf senescence3.52E-04
44GO:0060548: negative regulation of cell death4.24E-04
45GO:0010483: pollen tube reception4.24E-04
46GO:0010188: response to microbial phytotoxin4.24E-04
47GO:0042938: dipeptide transport4.24E-04
48GO:0006542: glutamine biosynthetic process4.24E-04
49GO:0080037: negative regulation of cytokinin-activated signaling pathway4.24E-04
50GO:0010225: response to UV-C5.39E-04
51GO:0009697: salicylic acid biosynthetic process5.39E-04
52GO:2000762: regulation of phenylpropanoid metabolic process5.39E-04
53GO:1900425: negative regulation of defense response to bacterium6.60E-04
54GO:0002238: response to molecule of fungal origin6.60E-04
55GO:0009759: indole glucosinolate biosynthetic process6.60E-04
56GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly6.60E-04
57GO:0010310: regulation of hydrogen peroxide metabolic process7.87E-04
58GO:0009612: response to mechanical stimulus7.87E-04
59GO:0043090: amino acid import9.18E-04
60GO:0010044: response to aluminum ion9.18E-04
61GO:0009787: regulation of abscisic acid-activated signaling pathway1.06E-03
62GO:0030162: regulation of proteolysis1.06E-03
63GO:1900150: regulation of defense response to fungus1.06E-03
64GO:0043068: positive regulation of programmed cell death1.06E-03
65GO:0006605: protein targeting1.06E-03
66GO:2000031: regulation of salicylic acid mediated signaling pathway1.20E-03
67GO:0030968: endoplasmic reticulum unfolded protein response1.20E-03
68GO:0009835: fruit ripening1.35E-03
69GO:0051865: protein autoubiquitination1.35E-03
70GO:0010112: regulation of systemic acquired resistance1.35E-03
71GO:0009753: response to jasmonic acid1.41E-03
72GO:1900426: positive regulation of defense response to bacterium1.50E-03
73GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.50E-03
74GO:0009870: defense response signaling pathway, resistance gene-dependent1.67E-03
75GO:0043069: negative regulation of programmed cell death1.67E-03
76GO:0000038: very long-chain fatty acid metabolic process1.84E-03
77GO:0009682: induced systemic resistance1.84E-03
78GO:0052544: defense response by callose deposition in cell wall1.84E-03
79GO:0012501: programmed cell death2.01E-03
80GO:0002213: defense response to insect2.01E-03
81GO:0010105: negative regulation of ethylene-activated signaling pathway2.01E-03
82GO:0006807: nitrogen compound metabolic process2.19E-03
83GO:0006468: protein phosphorylation2.30E-03
84GO:0009266: response to temperature stimulus2.38E-03
85GO:0009863: salicylic acid mediated signaling pathway2.96E-03
86GO:0009814: defense response, incompatible interaction3.59E-03
87GO:2000022: regulation of jasmonic acid mediated signaling pathway3.59E-03
88GO:0030433: ubiquitin-dependent ERAD pathway3.59E-03
89GO:0031348: negative regulation of defense response3.59E-03
90GO:0009693: ethylene biosynthetic process3.80E-03
91GO:0009411: response to UV3.80E-03
92GO:0001944: vasculature development3.80E-03
93GO:0009737: response to abscisic acid3.87E-03
94GO:0006662: glycerol ether metabolic process4.72E-03
95GO:0008654: phospholipid biosynthetic process5.21E-03
96GO:0000302: response to reactive oxygen species5.46E-03
97GO:0009723: response to ethylene5.67E-03
98GO:0071281: cellular response to iron ion5.97E-03
99GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.28E-03
100GO:0006979: response to oxidative stress6.55E-03
101GO:0001666: response to hypoxia7.04E-03
102GO:0045454: cell redox homeostasis7.27E-03
103GO:0009733: response to auxin7.51E-03
104GO:0009627: systemic acquired resistance7.59E-03
105GO:0042128: nitrate assimilation7.59E-03
106GO:0006950: response to stress7.88E-03
107GO:0008219: cell death8.46E-03
108GO:0048527: lateral root development9.36E-03
109GO:0006865: amino acid transport9.68E-03
110GO:0034599: cellular response to oxidative stress1.03E-02
111GO:0042542: response to hydrogen peroxide1.16E-02
112GO:0051707: response to other organism1.19E-02
113GO:0009965: leaf morphogenesis1.30E-02
114GO:0031347: regulation of defense response1.37E-02
115GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.37E-02
116GO:0042538: hyperosmotic salinity response1.40E-02
117GO:0006486: protein glycosylation1.47E-02
118GO:0010224: response to UV-B1.51E-02
119GO:0006857: oligopeptide transport1.55E-02
120GO:0009611: response to wounding1.63E-02
121GO:0009742: brassinosteroid mediated signaling pathway1.97E-02
122GO:0016567: protein ubiquitination2.65E-02
123GO:0009651: response to salt stress2.99E-02
124GO:0009739: response to gibberellin3.03E-02
125GO:0006470: protein dephosphorylation3.07E-02
126GO:0007166: cell surface receptor signaling pathway3.07E-02
127GO:0009414: response to water deprivation3.16E-02
128GO:0009826: unidimensional cell growth3.71E-02
129GO:0015031: protein transport4.10E-02
130GO:0080167: response to karrikin4.44E-02
131GO:0016192: vesicle-mediated transport4.60E-02
RankGO TermAdjusted P value
1GO:0004168: dolichol kinase activity0.00E+00
2GO:0003837: beta-ureidopropionase activity0.00E+00
3GO:0080042: ADP-glucose pyrophosphohydrolase activity5.18E-05
4GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity5.18E-05
5GO:0017110: nucleoside-diphosphatase activity1.27E-04
6GO:0042937: tripeptide transporter activity1.27E-04
7GO:0080041: ADP-ribose pyrophosphohydrolase activity1.27E-04
8GO:0016595: glutamate binding2.17E-04
9GO:0042936: dipeptide transporter activity4.24E-04
10GO:0047631: ADP-ribose diphosphatase activity5.39E-04
11GO:0004356: glutamate-ammonia ligase activity5.39E-04
12GO:0004605: phosphatidate cytidylyltransferase activity6.60E-04
13GO:0008420: CTD phosphatase activity6.60E-04
14GO:0000210: NAD+ diphosphatase activity6.60E-04
15GO:0036402: proteasome-activating ATPase activity6.60E-04
16GO:0061630: ubiquitin protein ligase activity8.53E-04
17GO:0008320: protein transmembrane transporter activity9.18E-04
18GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity1.06E-03
19GO:0005544: calcium-dependent phospholipid binding1.06E-03
20GO:0004714: transmembrane receptor protein tyrosine kinase activity1.06E-03
21GO:0004713: protein tyrosine kinase activity1.67E-03
22GO:0008794: arsenate reductase (glutaredoxin) activity1.84E-03
23GO:0015035: protein disulfide oxidoreductase activity1.92E-03
24GO:0016887: ATPase activity2.24E-03
25GO:0017025: TBP-class protein binding2.56E-03
26GO:0004674: protein serine/threonine kinase activity3.68E-03
27GO:0043565: sequence-specific DNA binding3.93E-03
28GO:0042802: identical protein binding4.04E-03
29GO:0047134: protein-disulfide reductase activity4.26E-03
30GO:0008080: N-acetyltransferase activity4.72E-03
31GO:0004791: thioredoxin-disulfide reductase activity4.96E-03
32GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.97E-03
33GO:0005515: protein binding7.86E-03
34GO:0004806: triglyceride lipase activity7.88E-03
35GO:0005524: ATP binding8.37E-03
36GO:0004222: metalloendopeptidase activity9.06E-03
37GO:0000987: core promoter proximal region sequence-specific DNA binding1.03E-02
38GO:0016301: kinase activity1.05E-02
39GO:0004364: glutathione transferase activity1.16E-02
40GO:0005198: structural molecule activity1.30E-02
41GO:0015293: symporter activity1.30E-02
42GO:0051287: NAD binding1.37E-02
43GO:0016298: lipase activity1.51E-02
44GO:0015171: amino acid transmembrane transporter activity1.58E-02
45GO:0031625: ubiquitin protein ligase binding1.58E-02
46GO:0022857: transmembrane transporter activity1.81E-02
47GO:0030170: pyridoxal phosphate binding2.39E-02
48GO:0005516: calmodulin binding2.41E-02
49GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.66E-02
50GO:0005509: calcium ion binding2.99E-02
51GO:0044212: transcription regulatory region DNA binding3.24E-02
52GO:0005215: transporter activity3.58E-02
53GO:0004842: ubiquitin-protein transferase activity4.46E-02
54GO:0004672: protein kinase activity4.73E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.40E-06
2GO:0030658: transport vesicle membrane3.17E-04
3GO:0005789: endoplasmic reticulum membrane4.75E-04
4GO:0016021: integral component of membrane5.16E-04
5GO:0031597: cytosolic proteasome complex7.87E-04
6GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane9.18E-04
7GO:0031595: nuclear proteasome complex9.18E-04
8GO:0008540: proteasome regulatory particle, base subcomplex1.50E-03
9GO:0005740: mitochondrial envelope1.67E-03
10GO:0031012: extracellular matrix2.19E-03
11GO:0030176: integral component of endoplasmic reticulum membrane2.56E-03
12GO:0005741: mitochondrial outer membrane3.37E-03
13GO:0032580: Golgi cisterna membrane6.23E-03
14GO:0016020: membrane6.49E-03
15GO:0005783: endoplasmic reticulum6.77E-03
16GO:0019005: SCF ubiquitin ligase complex8.46E-03
17GO:0000502: proteasome complex1.47E-02
18GO:0005635: nuclear envelope1.55E-02
19GO:0005829: cytosol2.05E-02
20GO:0005623: cell2.26E-02
21GO:0031225: anchored component of membrane2.49E-02
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Gene type



Gene DE type