GO Enrichment Analysis of Co-expressed Genes with
AT3G02690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042493: response to drug | 0.00E+00 |
| 2 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0009773: photosynthetic electron transport in photosystem I | 7.68E-07 |
| 5 | GO:0010206: photosystem II repair | 1.63E-05 |
| 6 | GO:0015979: photosynthesis | 3.89E-05 |
| 7 | GO:0006546: glycine catabolic process | 6.01E-05 |
| 8 | GO:0010411: xyloglucan metabolic process | 8.16E-05 |
| 9 | GO:0043266: regulation of potassium ion transport | 3.04E-04 |
| 10 | GO:0071370: cellular response to gibberellin stimulus | 3.04E-04 |
| 11 | GO:0031338: regulation of vesicle fusion | 3.04E-04 |
| 12 | GO:0000481: maturation of 5S rRNA | 3.04E-04 |
| 13 | GO:2000021: regulation of ion homeostasis | 3.04E-04 |
| 14 | GO:0034337: RNA folding | 3.04E-04 |
| 15 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.04E-04 |
| 16 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.04E-04 |
| 17 | GO:0006824: cobalt ion transport | 3.04E-04 |
| 18 | GO:0006810: transport | 4.03E-04 |
| 19 | GO:0010270: photosystem II oxygen evolving complex assembly | 6.66E-04 |
| 20 | GO:0046741: transport of virus in host, tissue to tissue | 6.66E-04 |
| 21 | GO:0080040: positive regulation of cellular response to phosphate starvation | 6.66E-04 |
| 22 | GO:0034755: iron ion transmembrane transport | 6.66E-04 |
| 23 | GO:0015995: chlorophyll biosynthetic process | 7.89E-04 |
| 24 | GO:0006518: peptide metabolic process | 1.08E-03 |
| 25 | GO:0045493: xylan catabolic process | 1.08E-03 |
| 26 | GO:0090630: activation of GTPase activity | 1.08E-03 |
| 27 | GO:2001295: malonyl-CoA biosynthetic process | 1.08E-03 |
| 28 | GO:1901332: negative regulation of lateral root development | 1.55E-03 |
| 29 | GO:0046836: glycolipid transport | 1.55E-03 |
| 30 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.55E-03 |
| 31 | GO:0051513: regulation of monopolar cell growth | 1.55E-03 |
| 32 | GO:0051639: actin filament network formation | 1.55E-03 |
| 33 | GO:0009152: purine ribonucleotide biosynthetic process | 1.55E-03 |
| 34 | GO:0046653: tetrahydrofolate metabolic process | 1.55E-03 |
| 35 | GO:0080170: hydrogen peroxide transmembrane transport | 1.55E-03 |
| 36 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.55E-03 |
| 37 | GO:0009650: UV protection | 1.55E-03 |
| 38 | GO:0010731: protein glutathionylation | 1.55E-03 |
| 39 | GO:0042546: cell wall biogenesis | 1.74E-03 |
| 40 | GO:0010037: response to carbon dioxide | 2.07E-03 |
| 41 | GO:0015976: carbon utilization | 2.07E-03 |
| 42 | GO:0051764: actin crosslink formation | 2.07E-03 |
| 43 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.07E-03 |
| 44 | GO:0045727: positive regulation of translation | 2.07E-03 |
| 45 | GO:0015994: chlorophyll metabolic process | 2.07E-03 |
| 46 | GO:2000122: negative regulation of stomatal complex development | 2.07E-03 |
| 47 | GO:0030104: water homeostasis | 2.07E-03 |
| 48 | GO:0042549: photosystem II stabilization | 3.27E-03 |
| 49 | GO:0006828: manganese ion transport | 3.27E-03 |
| 50 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.27E-03 |
| 51 | GO:0000302: response to reactive oxygen species | 3.55E-03 |
| 52 | GO:0071554: cell wall organization or biogenesis | 3.55E-03 |
| 53 | GO:0048280: vesicle fusion with Golgi apparatus | 3.93E-03 |
| 54 | GO:0010019: chloroplast-nucleus signaling pathway | 3.93E-03 |
| 55 | GO:0009612: response to mechanical stimulus | 3.93E-03 |
| 56 | GO:0005975: carbohydrate metabolic process | 4.17E-03 |
| 57 | GO:0009645: response to low light intensity stimulus | 4.64E-03 |
| 58 | GO:0010196: nonphotochemical quenching | 4.64E-03 |
| 59 | GO:0009704: de-etiolation | 5.39E-03 |
| 60 | GO:0032508: DNA duplex unwinding | 5.39E-03 |
| 61 | GO:0010439: regulation of glucosinolate biosynthetic process | 5.39E-03 |
| 62 | GO:0032544: plastid translation | 6.18E-03 |
| 63 | GO:0017004: cytochrome complex assembly | 6.18E-03 |
| 64 | GO:0009657: plastid organization | 6.18E-03 |
| 65 | GO:0018298: protein-chromophore linkage | 6.69E-03 |
| 66 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.01E-03 |
| 67 | GO:0009821: alkaloid biosynthetic process | 7.01E-03 |
| 68 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 7.01E-03 |
| 69 | GO:0009638: phototropism | 7.87E-03 |
| 70 | GO:0008152: metabolic process | 8.51E-03 |
| 71 | GO:0006896: Golgi to vacuole transport | 8.77E-03 |
| 72 | GO:0034599: cellular response to oxidative stress | 8.87E-03 |
| 73 | GO:0009684: indoleacetic acid biosynthetic process | 9.71E-03 |
| 74 | GO:0006816: calcium ion transport | 9.71E-03 |
| 75 | GO:0006415: translational termination | 9.71E-03 |
| 76 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.07E-02 |
| 77 | GO:0010628: positive regulation of gene expression | 1.17E-02 |
| 78 | GO:0006006: glucose metabolic process | 1.17E-02 |
| 79 | GO:0009767: photosynthetic electron transport chain | 1.17E-02 |
| 80 | GO:0010143: cutin biosynthetic process | 1.27E-02 |
| 81 | GO:0009658: chloroplast organization | 1.33E-02 |
| 82 | GO:0010030: positive regulation of seed germination | 1.38E-02 |
| 83 | GO:0005985: sucrose metabolic process | 1.38E-02 |
| 84 | GO:0009735: response to cytokinin | 1.53E-02 |
| 85 | GO:0006857: oligopeptide transport | 1.59E-02 |
| 86 | GO:0051017: actin filament bundle assembly | 1.60E-02 |
| 87 | GO:0000027: ribosomal large subunit assembly | 1.60E-02 |
| 88 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.72E-02 |
| 89 | GO:0007017: microtubule-based process | 1.72E-02 |
| 90 | GO:0048511: rhythmic process | 1.84E-02 |
| 91 | GO:0061077: chaperone-mediated protein folding | 1.84E-02 |
| 92 | GO:0006508: proteolysis | 1.87E-02 |
| 93 | GO:0009411: response to UV | 2.09E-02 |
| 94 | GO:0006012: galactose metabolic process | 2.09E-02 |
| 95 | GO:0009306: protein secretion | 2.22E-02 |
| 96 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.35E-02 |
| 97 | GO:0042147: retrograde transport, endosome to Golgi | 2.35E-02 |
| 98 | GO:0080022: primary root development | 2.48E-02 |
| 99 | GO:0034220: ion transmembrane transport | 2.48E-02 |
| 100 | GO:0000413: protein peptidyl-prolyl isomerization | 2.48E-02 |
| 101 | GO:0042631: cellular response to water deprivation | 2.48E-02 |
| 102 | GO:0032259: methylation | 2.70E-02 |
| 103 | GO:0042752: regulation of circadian rhythm | 2.76E-02 |
| 104 | GO:0009058: biosynthetic process | 2.79E-02 |
| 105 | GO:0006623: protein targeting to vacuole | 2.90E-02 |
| 106 | GO:0042744: hydrogen peroxide catabolic process | 3.01E-02 |
| 107 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.04E-02 |
| 108 | GO:0002229: defense response to oomycetes | 3.04E-02 |
| 109 | GO:0009753: response to jasmonic acid | 3.11E-02 |
| 110 | GO:0019761: glucosinolate biosynthetic process | 3.19E-02 |
| 111 | GO:0006633: fatty acid biosynthetic process | 3.32E-02 |
| 112 | GO:1901657: glycosyl compound metabolic process | 3.33E-02 |
| 113 | GO:0030163: protein catabolic process | 3.33E-02 |
| 114 | GO:0051607: defense response to virus | 3.79E-02 |
| 115 | GO:0010027: thylakoid membrane organization | 3.95E-02 |
| 116 | GO:0009615: response to virus | 3.95E-02 |
| 117 | GO:0042128: nitrate assimilation | 4.27E-02 |
| 118 | GO:0006888: ER to Golgi vesicle-mediated transport | 4.44E-02 |
| 119 | GO:0009817: defense response to fungus, incompatible interaction | 4.77E-02 |
| 120 | GO:0071555: cell wall organization | 4.90E-02 |
| 121 | GO:0010311: lateral root formation | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 5 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
| 6 | GO:0005528: FK506 binding | 8.51E-08 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.84E-06 |
| 8 | GO:0016851: magnesium chelatase activity | 3.35E-05 |
| 9 | GO:0004130: cytochrome-c peroxidase activity | 1.37E-04 |
| 10 | GO:0019843: rRNA binding | 1.48E-04 |
| 11 | GO:0004856: xylulokinase activity | 3.04E-04 |
| 12 | GO:0004033: aldo-keto reductase (NADP) activity | 3.09E-04 |
| 13 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 3.99E-04 |
| 14 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 6.56E-04 |
| 15 | GO:0047746: chlorophyllase activity | 6.66E-04 |
| 16 | GO:0016868: intramolecular transferase activity, phosphotransferases | 6.66E-04 |
| 17 | GO:0004047: aminomethyltransferase activity | 6.66E-04 |
| 18 | GO:0008967: phosphoglycolate phosphatase activity | 6.66E-04 |
| 19 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 6.66E-04 |
| 20 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 7.89E-04 |
| 21 | GO:0004075: biotin carboxylase activity | 1.08E-03 |
| 22 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 1.08E-03 |
| 23 | GO:0030267: glyoxylate reductase (NADP) activity | 1.08E-03 |
| 24 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.08E-03 |
| 25 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.08E-03 |
| 26 | GO:0050734: hydroxycinnamoyltransferase activity | 1.08E-03 |
| 27 | GO:0016149: translation release factor activity, codon specific | 1.55E-03 |
| 28 | GO:0017089: glycolipid transporter activity | 1.55E-03 |
| 29 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.55E-03 |
| 30 | GO:0046556: alpha-L-arabinofuranosidase activity | 2.07E-03 |
| 31 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.07E-03 |
| 32 | GO:0016836: hydro-lyase activity | 2.07E-03 |
| 33 | GO:0051861: glycolipid binding | 2.07E-03 |
| 34 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.07E-03 |
| 35 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 2.07E-03 |
| 36 | GO:0009044: xylan 1,4-beta-xylosidase activity | 2.07E-03 |
| 37 | GO:0003989: acetyl-CoA carboxylase activity | 2.65E-03 |
| 38 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.65E-03 |
| 39 | GO:0017137: Rab GTPase binding | 2.65E-03 |
| 40 | GO:0004040: amidase activity | 2.65E-03 |
| 41 | GO:0016688: L-ascorbate peroxidase activity | 3.27E-03 |
| 42 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.27E-03 |
| 43 | GO:0042578: phosphoric ester hydrolase activity | 3.27E-03 |
| 44 | GO:0051920: peroxiredoxin activity | 3.93E-03 |
| 45 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.93E-03 |
| 46 | GO:0004017: adenylate kinase activity | 3.93E-03 |
| 47 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.93E-03 |
| 48 | GO:0016413: O-acetyltransferase activity | 4.84E-03 |
| 49 | GO:0004564: beta-fructofuranosidase activity | 5.39E-03 |
| 50 | GO:0016209: antioxidant activity | 5.39E-03 |
| 51 | GO:0004034: aldose 1-epimerase activity | 5.39E-03 |
| 52 | GO:0016168: chlorophyll binding | 5.42E-03 |
| 53 | GO:0008236: serine-type peptidase activity | 6.36E-03 |
| 54 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 7.01E-03 |
| 55 | GO:0003747: translation release factor activity | 7.01E-03 |
| 56 | GO:0005096: GTPase activator activity | 7.03E-03 |
| 57 | GO:0004222: metalloendopeptidase activity | 7.38E-03 |
| 58 | GO:0016844: strictosidine synthase activity | 7.87E-03 |
| 59 | GO:0004575: sucrose alpha-glucosidase activity | 7.87E-03 |
| 60 | GO:0005381: iron ion transmembrane transporter activity | 7.87E-03 |
| 61 | GO:0005384: manganese ion transmembrane transporter activity | 7.87E-03 |
| 62 | GO:0004364: glutathione transferase activity | 1.05E-02 |
| 63 | GO:0008378: galactosyltransferase activity | 1.07E-02 |
| 64 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.17E-02 |
| 65 | GO:0004089: carbonate dehydratase activity | 1.17E-02 |
| 66 | GO:0015095: magnesium ion transmembrane transporter activity | 1.17E-02 |
| 67 | GO:0031072: heat shock protein binding | 1.17E-02 |
| 68 | GO:0004565: beta-galactosidase activity | 1.17E-02 |
| 69 | GO:0008266: poly(U) RNA binding | 1.27E-02 |
| 70 | GO:0016788: hydrolase activity, acting on ester bonds | 1.36E-02 |
| 71 | GO:0005509: calcium ion binding | 1.46E-02 |
| 72 | GO:0031409: pigment binding | 1.49E-02 |
| 73 | GO:0004176: ATP-dependent peptidase activity | 1.84E-02 |
| 74 | GO:0004707: MAP kinase activity | 1.84E-02 |
| 75 | GO:0022891: substrate-specific transmembrane transporter activity | 2.09E-02 |
| 76 | GO:0030570: pectate lyase activity | 2.09E-02 |
| 77 | GO:0003756: protein disulfide isomerase activity | 2.22E-02 |
| 78 | GO:0004871: signal transducer activity | 2.32E-02 |
| 79 | GO:0030246: carbohydrate binding | 2.71E-02 |
| 80 | GO:0016853: isomerase activity | 2.76E-02 |
| 81 | GO:0050662: coenzyme binding | 2.76E-02 |
| 82 | GO:0004252: serine-type endopeptidase activity | 2.94E-02 |
| 83 | GO:0048038: quinone binding | 3.04E-02 |
| 84 | GO:0004518: nuclease activity | 3.19E-02 |
| 85 | GO:0051015: actin filament binding | 3.33E-02 |
| 86 | GO:0005200: structural constituent of cytoskeleton | 3.64E-02 |
| 87 | GO:0008483: transaminase activity | 3.64E-02 |
| 88 | GO:0008237: metallopeptidase activity | 3.64E-02 |
| 89 | GO:0016597: amino acid binding | 3.79E-02 |
| 90 | GO:0051213: dioxygenase activity | 3.95E-02 |
| 91 | GO:0015250: water channel activity | 3.95E-02 |
| 92 | GO:0102483: scopolin beta-glucosidase activity | 4.44E-02 |
| 93 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.77E-02 |
| 94 | GO:0015238: drug transmembrane transporter activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.34E-39 |
| 3 | GO:0009534: chloroplast thylakoid | 1.86E-25 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 4.71E-23 |
| 5 | GO:0009570: chloroplast stroma | 7.94E-22 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.09E-18 |
| 7 | GO:0009941: chloroplast envelope | 1.08E-15 |
| 8 | GO:0031977: thylakoid lumen | 3.14E-11 |
| 9 | GO:0009579: thylakoid | 3.14E-09 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-07 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 5.18E-06 |
| 12 | GO:0010007: magnesium chelatase complex | 1.50E-05 |
| 13 | GO:0019898: extrinsic component of membrane | 2.52E-05 |
| 14 | GO:0030095: chloroplast photosystem II | 6.83E-05 |
| 15 | GO:0010287: plastoglobule | 1.32E-04 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 2.45E-04 |
| 17 | GO:0009344: nitrite reductase complex [NAD(P)H] | 3.04E-04 |
| 18 | GO:0043674: columella | 3.04E-04 |
| 19 | GO:0009531: secondary cell wall | 1.55E-03 |
| 20 | GO:0005775: vacuolar lumen | 1.55E-03 |
| 21 | GO:0032432: actin filament bundle | 1.55E-03 |
| 22 | GO:0005960: glycine cleavage complex | 1.55E-03 |
| 23 | GO:0048046: apoplast | 1.61E-03 |
| 24 | GO:0031969: chloroplast membrane | 4.06E-03 |
| 25 | GO:0042807: central vacuole | 4.64E-03 |
| 26 | GO:0012507: ER to Golgi transport vesicle membrane | 5.39E-03 |
| 27 | GO:0045298: tubulin complex | 7.01E-03 |
| 28 | GO:0016020: membrane | 7.38E-03 |
| 29 | GO:0009505: plant-type cell wall | 8.40E-03 |
| 30 | GO:0005884: actin filament | 9.71E-03 |
| 31 | GO:0031902: late endosome membrane | 1.01E-02 |
| 32 | GO:0032040: small-subunit processome | 1.07E-02 |
| 33 | GO:0005618: cell wall | 1.32E-02 |
| 34 | GO:0030076: light-harvesting complex | 1.38E-02 |
| 35 | GO:0042651: thylakoid membrane | 1.72E-02 |
| 36 | GO:0009706: chloroplast inner membrane | 2.11E-02 |
| 37 | GO:0009522: photosystem I | 2.76E-02 |
| 38 | GO:0009523: photosystem II | 2.90E-02 |
| 39 | GO:0009705: plant-type vacuole membrane | 3.65E-02 |