co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0007172: signal complex assembly	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:0045014: negative regulation of transcription by glucose	0.00E+00
8	GO:1905615: positive regulation of developmental vegetative growth	0.00E+00
9	GO:1902025: nitrate import	1.00E-04
10	GO:0015808: L-alanine transport	1.00E-04
11	GO:0010480: microsporocyte differentiation	1.00E-04
12	GO:0043609: regulation of carbon utilization	1.00E-04
13	GO:0090548: response to nitrate starvation	1.00E-04
14	GO:0010028: xanthophyll cycle	1.00E-04
15	GO:0010450: inflorescence meristem growth	1.00E-04
16	GO:0015936: coenzyme A metabolic process	1.00E-04
17	GO:0015969: guanosine tetraphosphate metabolic process	1.00E-04
18	GO:0009934: regulation of meristem structural organization	2.31E-04
19	GO:0046373: L-arabinose metabolic process	2.36E-04
20	GO:1901959: positive regulation of cutin biosynthetic process	2.36E-04
21	GO:0090342: regulation of cell aging	2.36E-04
22	GO:0042325: regulation of phosphorylation	2.36E-04
23	GO:0098712: L-glutamate import across plasma membrane	2.36E-04
24	GO:0016122: xanthophyll metabolic process	2.36E-04
25	GO:0015804: neutral amino acid transport	2.36E-04
26	GO:0009416: response to light stimulus	3.07E-04
27	GO:1904278: positive regulation of wax biosynthetic process	3.92E-04
28	GO:0071230: cellular response to amino acid stimulus	3.92E-04
29	GO:0045493: xylan catabolic process	3.92E-04
30	GO:0045165: cell fate commitment	3.92E-04
31	GO:0006000: fructose metabolic process	3.92E-04
32	GO:0080092: regulation of pollen tube growth	4.31E-04
33	GO:0010116: positive regulation of abscisic acid biosynthetic process	5.64E-04
34	GO:0051639: actin filament network formation	5.64E-04
35	GO:0045489: pectin biosynthetic process	6.40E-04
36	GO:0010305: leaf vascular tissue pattern formation	6.40E-04
37	GO:0048825: cotyledon development	7.34E-04
38	GO:0045723: positive regulation of fatty acid biosynthetic process	7.50E-04
39	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	7.50E-04
40	GO:0080037: negative regulation of cytokinin-activated signaling pathway	7.50E-04
41	GO:0051764: actin crosslink formation	7.50E-04
42	GO:0015994: chlorophyll metabolic process	7.50E-04
43	GO:2000762: regulation of phenylpropanoid metabolic process	9.47E-04
44	GO:1902183: regulation of shoot apical meristem development	9.47E-04
45	GO:0010158: abaxial cell fate specification	9.47E-04
46	GO:0006413: translational initiation	9.73E-04
47	GO:0007623: circadian rhythm	1.06E-03
48	GO:0016126: sterol biosynthetic process	1.11E-03
49	GO:1901371: regulation of leaf morphogenesis	1.16E-03
50	GO:0009913: epidermal cell differentiation	1.16E-03
51	GO:0048827: phyllome development	1.16E-03
52	GO:0042549: photosystem II stabilization	1.16E-03
53	GO:0010310: regulation of hydrogen peroxide metabolic process	1.38E-03
54	GO:1901001: negative regulation of response to salt stress	1.38E-03
55	GO:0048437: floral organ development	1.62E-03
56	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.62E-03
57	GO:0043090: amino acid import	1.62E-03
58	GO:1900056: negative regulation of leaf senescence	1.62E-03
59	GO:0009910: negative regulation of flower development	1.65E-03
60	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.87E-03
61	GO:0070413: trehalose metabolism in response to stress	1.87E-03
62	GO:0034968: histone lysine methylation	1.87E-03
63	GO:0010093: specification of floral organ identity	2.14E-03
64	GO:0009932: cell tip growth	2.14E-03
65	GO:0006002: fructose 6-phosphate metabolic process	2.14E-03
66	GO:0009827: plant-type cell wall modification	2.14E-03
67	GO:0048507: meristem development	2.41E-03
68	GO:2000024: regulation of leaf development	2.41E-03
69	GO:0000373: Group II intron splicing	2.41E-03
70	GO:0048589: developmental growth	2.41E-03
71	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.50E-03
72	GO:0010380: regulation of chlorophyll biosynthetic process	2.70E-03
73	GO:0016571: histone methylation	2.70E-03
74	GO:0010629: negative regulation of gene expression	3.00E-03
75	GO:0048229: gametophyte development	3.31E-03
76	GO:0046856: phosphatidylinositol dephosphorylation	3.31E-03
77	GO:0006816: calcium ion transport	3.31E-03
78	GO:0009909: regulation of flower development	3.44E-03
79	GO:0010152: pollen maturation	3.63E-03
80	GO:0010229: inflorescence development	3.95E-03
81	GO:0010075: regulation of meristem growth	3.95E-03
82	GO:0009753: response to jasmonic acid	4.29E-03
83	GO:0009933: meristem structural organization	4.30E-03
84	GO:0010207: photosystem II assembly	4.30E-03
85	GO:0009887: animal organ morphogenesis	4.30E-03
86	GO:0010540: basipetal auxin transport	4.30E-03
87	GO:0009266: response to temperature stimulus	4.30E-03
88	GO:0010053: root epidermal cell differentiation	4.64E-03
89	GO:0042343: indole glucosinolate metabolic process	4.64E-03
90	GO:0006636: unsaturated fatty acid biosynthetic process	5.00E-03
91	GO:0019762: glucosinolate catabolic process	5.00E-03
92	GO:0009944: polarity specification of adaxial/abaxial axis	5.37E-03
93	GO:0051017: actin filament bundle assembly	5.37E-03
94	GO:2000377: regulation of reactive oxygen species metabolic process	5.37E-03
95	GO:0005992: trehalose biosynthetic process	5.37E-03
96	GO:0008299: isoprenoid biosynthetic process	5.75E-03
97	GO:0006874: cellular calcium ion homeostasis	5.75E-03
98	GO:0098542: defense response to other organism	6.14E-03
99	GO:0010017: red or far-red light signaling pathway	6.54E-03
100	GO:0009686: gibberellin biosynthetic process	6.94E-03
101	GO:0048443: stamen development	7.35E-03
102	GO:0016567: protein ubiquitination	7.55E-03
103	GO:0000271: polysaccharide biosynthetic process	8.21E-03
104	GO:0010051: xylem and phloem pattern formation	8.21E-03
105	GO:0048653: anther development	8.21E-03
106	GO:0009739: response to gibberellin	8.52E-03
107	GO:0071472: cellular response to salt stress	8.65E-03
108	GO:0010154: fruit development	8.65E-03
109	GO:0010268: brassinosteroid homeostasis	8.65E-03
110	GO:0042752: regulation of circadian rhythm	9.10E-03
111	GO:0016132: brassinosteroid biosynthetic process	1.00E-02
112	GO:0009630: gravitropism	1.05E-02
113	GO:0016125: sterol metabolic process	1.15E-02
114	GO:0071805: potassium ion transmembrane transport	1.20E-02
115	GO:0009860: pollen tube growth	1.27E-02
116	GO:0009911: positive regulation of flower development	1.30E-02
117	GO:0046777: protein autophosphorylation	1.57E-02
118	GO:0030244: cellulose biosynthetic process	1.57E-02
119	GO:0000160: phosphorelay signal transduction system	1.62E-02
120	GO:0006499: N-terminal protein myristoylation	1.68E-02
121	GO:0009834: plant-type secondary cell wall biogenesis	1.68E-02
122	GO:0009631: cold acclimation	1.74E-02
123	GO:0045087: innate immune response	1.86E-02
124	GO:0016051: carbohydrate biosynthetic process	1.86E-02
125	GO:0009853: photorespiration	1.86E-02
126	GO:0006631: fatty acid metabolic process	2.10E-02
127	GO:0009751: response to salicylic acid	2.14E-02
128	GO:0006629: lipid metabolic process	2.17E-02
129	GO:0009640: photomorphogenesis	2.22E-02
130	GO:0048364: root development	2.26E-02
131	GO:0006813: potassium ion transport	2.75E-02
132	GO:0006351: transcription, DNA-templated	3.23E-02
133	GO:0009908: flower development	3.47E-02
134	GO:0009624: response to nematode	3.53E-02
135	GO:0009742: brassinosteroid mediated signaling pathway	3.68E-02
136	GO:0006468: protein phosphorylation	3.69E-02
137	GO:0009611: response to wounding	3.92E-02
138	GO:0009845: seed germination	4.38E-02
139	GO:0045893: positive regulation of transcription, DNA-templated	4.40E-02
140	GO:0009790: embryo development	4.62E-02
141	GO:0006633: fatty acid biosynthetic process	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0017046: peptide hormone binding	0.00E+00
2	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0008066: glutamate receptor activity	1.00E-04
8	GO:0051777: ent-kaurenoate oxidase activity	1.00E-04
9	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	1.00E-04
10	GO:0015194: L-serine transmembrane transporter activity	1.00E-04
11	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	1.00E-04
12	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.52E-04
13	GO:0008728: GTP diphosphokinase activity	2.36E-04
14	GO:0015180: L-alanine transmembrane transporter activity	2.36E-04
15	GO:0005094: Rho GDP-dissociation inhibitor activity	2.36E-04
16	GO:0004312: fatty acid synthase activity	2.36E-04
17	GO:0010428: methyl-CpNpG binding	3.92E-04
18	GO:0004148: dihydrolipoyl dehydrogenase activity	3.92E-04
19	GO:0015193: L-proline transmembrane transporter activity	3.92E-04
20	GO:0016805: dipeptidase activity	3.92E-04
21	GO:0010429: methyl-CpNpN binding	3.92E-04
22	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	3.92E-04
23	GO:0004180: carboxypeptidase activity	3.92E-04
24	GO:0033612: receptor serine/threonine kinase binding	3.94E-04
25	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	5.64E-04
26	GO:0015186: L-glutamine transmembrane transporter activity	5.64E-04
27	GO:0019201: nucleotide kinase activity	5.64E-04
28	GO:0015175: neutral amino acid transmembrane transporter activity	5.64E-04
29	GO:0005313: L-glutamate transmembrane transporter activity	7.50E-04
30	GO:0004506: squalene monooxygenase activity	7.50E-04
31	GO:0009044: xylan 1,4-beta-xylosidase activity	7.50E-04
32	GO:0042277: peptide binding	7.50E-04
33	GO:0046556: alpha-L-arabinofuranosidase activity	7.50E-04
34	GO:0010011: auxin binding	7.50E-04
35	GO:0008453: alanine-glyoxylate transaminase activity	7.50E-04
36	GO:0002020: protease binding	9.47E-04
37	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.16E-03
38	GO:2001070: starch binding	1.16E-03
39	GO:0016301: kinase activity	1.31E-03
40	GO:0004017: adenylate kinase activity	1.38E-03
41	GO:0003677: DNA binding	2.09E-03
42	GO:0004805: trehalose-phosphatase activity	3.00E-03
43	GO:0030234: enzyme regulator activity	3.00E-03
44	GO:0008327: methyl-CpG binding	3.31E-03
45	GO:0000976: transcription regulatory region sequence-specific DNA binding	3.63E-03
46	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.63E-03
47	GO:0008081: phosphoric diester hydrolase activity	3.95E-03
48	GO:0005262: calcium channel activity	3.95E-03
49	GO:0019888: protein phosphatase regulator activity	3.95E-03
50	GO:0005217: intracellular ligand-gated ion channel activity	4.64E-03
51	GO:0004970: ionotropic glutamate receptor activity	4.64E-03
52	GO:0004190: aspartic-type endopeptidase activity	4.64E-03
53	GO:0004674: protein serine/threonine kinase activity	5.55E-03
54	GO:0015079: potassium ion transmembrane transporter activity	5.75E-03
55	GO:0008289: lipid binding	5.96E-03
56	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.54E-03
57	GO:0005515: protein binding	6.59E-03
58	GO:0018024: histone-lysine N-methyltransferase activity	7.78E-03
59	GO:0003743: translation initiation factor activity	8.90E-03
60	GO:0004518: nuclease activity	1.05E-02
61	GO:0000156: phosphorelay response regulator activity	1.10E-02
62	GO:0051015: actin filament binding	1.10E-02
63	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.20E-02
64	GO:0008483: transaminase activity	1.20E-02
65	GO:0016413: O-acetyltransferase activity	1.25E-02
66	GO:0050660: flavin adenine dinucleotide binding	1.37E-02
67	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.43E-02
68	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.46E-02
69	GO:0005096: GTPase activator activity	1.62E-02
70	GO:0050897: cobalt ion binding	1.74E-02
71	GO:0004871: signal transducer activity	1.84E-02
72	GO:0003746: translation elongation factor activity	1.86E-02
73	GO:0044212: transcription regulatory region DNA binding	1.99E-02
74	GO:0042393: histone binding	2.03E-02
75	GO:0050661: NADP binding	2.03E-02
76	GO:0005524: ATP binding	2.26E-02
77	GO:0043621: protein self-association	2.35E-02
78	GO:0015293: symporter activity	2.41E-02
79	GO:0016298: lipase activity	2.81E-02
80	GO:0015171: amino acid transmembrane transporter activity	2.95E-02
81	GO:0008234: cysteine-type peptidase activity	2.95E-02
82	GO:0003779: actin binding	3.46E-02
83	GO:0016758: transferase activity, transferring hexosyl groups	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0005886: plasma membrane	2.24E-04
3	GO:0032432: actin filament bundle	5.64E-04
4	GO:0030660: Golgi-associated vesicle membrane	7.50E-04
5	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	7.50E-04
6	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.87E-03
7	GO:0016324: apical plasma membrane	3.00E-03
8	GO:0005884: actin filament	3.31E-03
9	GO:0000159: protein phosphatase type 2A complex	3.31E-03
10	GO:0005765: lysosomal membrane	3.31E-03
11	GO:0005578: proteinaceous extracellular matrix	3.95E-03
12	GO:0030095: chloroplast photosystem II	4.30E-03
13	GO:0005875: microtubule associated complex	5.00E-03
14	GO:0000775: chromosome, centromeric region	6.54E-03
15	GO:0005770: late endosome	8.65E-03
16	GO:0030529: intracellular ribonucleoprotein complex	1.30E-02
17	GO:0000325: plant-type vacuole	1.74E-02
18	GO:0005773: vacuole	1.97E-02
19	GO:0031977: thylakoid lumen	2.10E-02
20	GO:0009570: chloroplast stroma	2.81E-02
21	GO:0009507: chloroplast	2.88E-02
22	GO:0005747: mitochondrial respiratory chain complex I	3.17E-02
23	GO:0010008: endosome membrane	3.17E-02
24	GO:0048046: apoplast	3.28E-02
25	GO:0005789: endoplasmic reticulum membrane	3.37E-02
26	GO:0009543: chloroplast thylakoid lumen	4.14E-02
27	GO:0009534: chloroplast thylakoid	4.62E-02
28	GO:0005759: mitochondrial matrix	4.87E-02