co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006793: phosphorus metabolic process	0.00E+00
2	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
3	GO:0006182: cGMP biosynthetic process	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:0002191: cap-dependent translational initiation	0.00E+00
6	GO:0042430: indole-containing compound metabolic process	0.00E+00
7	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
8	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.85E-09
9	GO:0034976: response to endoplasmic reticulum stress	6.81E-09
10	GO:0009617: response to bacterium	1.75E-08
11	GO:0042742: defense response to bacterium	7.77E-08
12	GO:0009751: response to salicylic acid	6.68E-06
13	GO:0006457: protein folding	1.16E-05
14	GO:0002237: response to molecule of bacterial origin	1.92E-05
15	GO:0045454: cell redox homeostasis	3.91E-05
16	GO:0006468: protein phosphorylation	4.08E-05
17	GO:0010150: leaf senescence	5.22E-05
18	GO:0006102: isocitrate metabolic process	1.32E-04
19	GO:0010193: response to ozone	1.33E-04
20	GO:0009620: response to fungus	1.54E-04
21	GO:0010120: camalexin biosynthetic process	1.65E-04
22	GO:0046244: salicylic acid catabolic process	1.73E-04
23	GO:0050691: regulation of defense response to virus by host	1.73E-04
24	GO:0051938: L-glutamate import	1.73E-04
25	GO:1990641: response to iron ion starvation	1.73E-04
26	GO:0042964: thioredoxin reduction	1.73E-04
27	GO:0046686: response to cadmium ion	1.88E-04
28	GO:0055114: oxidation-reduction process	1.96E-04
29	GO:0009627: systemic acquired resistance	2.61E-04
30	GO:0009817: defense response to fungus, incompatible interaction	3.22E-04
31	GO:0009682: induced systemic resistance	3.31E-04
32	GO:0045905: positive regulation of translational termination	3.92E-04
33	GO:0043091: L-arginine import	3.92E-04
34	GO:0051592: response to calcium ion	3.92E-04
35	GO:0031204: posttranslational protein targeting to membrane, translocation	3.92E-04
36	GO:0045901: positive regulation of translational elongation	3.92E-04
37	GO:0015802: basic amino acid transport	3.92E-04
38	GO:0006452: translational frameshifting	3.92E-04
39	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	3.92E-04
40	GO:0044419: interspecies interaction between organisms	3.92E-04
41	GO:0006101: citrate metabolic process	3.92E-04
42	GO:0015865: purine nucleotide transport	3.92E-04
43	GO:0006099: tricarboxylic acid cycle	4.64E-04
44	GO:0042542: response to hydrogen peroxide	5.75E-04
45	GO:0010351: lithium ion transport	6.40E-04
46	GO:0010272: response to silver ion	6.40E-04
47	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	6.40E-04
48	GO:0002230: positive regulation of defense response to virus by host	6.40E-04
49	GO:0006874: cellular calcium ion homeostasis	7.39E-04
50	GO:0031347: regulation of defense response	7.70E-04
51	GO:0016998: cell wall macromolecule catabolic process	8.10E-04
52	GO:0071456: cellular response to hypoxia	8.83E-04
53	GO:0002679: respiratory burst involved in defense response	9.13E-04
54	GO:1902290: positive regulation of defense response to oomycetes	9.13E-04
55	GO:0006882: cellular zinc ion homeostasis	9.13E-04
56	GO:0010116: positive regulation of abscisic acid biosynthetic process	9.13E-04
57	GO:0002239: response to oomycetes	9.13E-04
58	GO:0046902: regulation of mitochondrial membrane permeability	9.13E-04
59	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.21E-03
60	GO:0030041: actin filament polymerization	1.54E-03
61	GO:0006097: glyoxylate cycle	1.54E-03
62	GO:0018344: protein geranylgeranylation	1.54E-03
63	GO:0034052: positive regulation of plant-type hypersensitive response	1.54E-03
64	GO:0000304: response to singlet oxygen	1.54E-03
65	GO:0009697: salicylic acid biosynthetic process	1.54E-03
66	GO:0000302: response to reactive oxygen species	1.60E-03
67	GO:0015031: protein transport	1.72E-03
68	GO:0006561: proline biosynthetic process	1.89E-03
69	GO:0001731: formation of translation preinitiation complex	1.89E-03
70	GO:0010256: endomembrane system organization	1.89E-03
71	GO:0009567: double fertilization forming a zygote and endosperm	1.93E-03
72	GO:0042372: phylloquinone biosynthetic process	2.27E-03
73	GO:0009615: response to virus	2.30E-03
74	GO:0006413: translational initiation	2.48E-03
75	GO:0030026: cellular manganese ion homeostasis	2.67E-03
76	GO:1900057: positive regulation of leaf senescence	2.67E-03
77	GO:1902074: response to salt	2.67E-03
78	GO:1900056: negative regulation of leaf senescence	2.67E-03
79	GO:0019745: pentacyclic triterpenoid biosynthetic process	2.67E-03
80	GO:0042773: ATP synthesis coupled electron transport	2.67E-03
81	GO:0008219: cell death	2.99E-03
82	GO:0050832: defense response to fungus	3.00E-03
83	GO:0006875: cellular metal ion homeostasis	3.09E-03
84	GO:0009850: auxin metabolic process	3.09E-03
85	GO:0030091: protein repair	3.09E-03
86	GO:0007166: cell surface receptor signaling pathway	3.21E-03
87	GO:0007568: aging	3.45E-03
88	GO:0009699: phenylpropanoid biosynthetic process	3.54E-03
89	GO:0019430: removal of superoxide radicals	3.54E-03
90	GO:0010112: regulation of systemic acquired resistance	4.00E-03
91	GO:0007338: single fertilization	4.00E-03
92	GO:0046685: response to arsenic-containing substance	4.00E-03
93	GO:0051865: protein autoubiquitination	4.00E-03
94	GO:0006979: response to oxidative stress	4.12E-03
95	GO:0006952: defense response	4.23E-03
96	GO:0008202: steroid metabolic process	4.49E-03
97	GO:1900426: positive regulation of defense response to bacterium	4.49E-03
98	GO:0043067: regulation of programmed cell death	4.49E-03
99	GO:0006032: chitin catabolic process	4.99E-03
100	GO:0009688: abscisic acid biosynthetic process	4.99E-03
101	GO:0006896: Golgi to vacuole transport	4.99E-03
102	GO:0055062: phosphate ion homeostasis	4.99E-03
103	GO:0007064: mitotic sister chromatid cohesion	4.99E-03
104	GO:0000272: polysaccharide catabolic process	5.52E-03
105	GO:0000266: mitochondrial fission	6.06E-03
106	GO:0006790: sulfur compound metabolic process	6.06E-03
107	GO:0002213: defense response to insect	6.06E-03
108	GO:0015706: nitrate transport	6.06E-03
109	GO:0010200: response to chitin	6.48E-03
110	GO:0009718: anthocyanin-containing compound biosynthetic process	6.61E-03
111	GO:0010075: regulation of meristem growth	6.61E-03
112	GO:0006446: regulation of translational initiation	7.20E-03
113	GO:0009934: regulation of meristem structural organization	7.20E-03
114	GO:0046854: phosphatidylinositol phosphorylation	7.79E-03
115	GO:0010167: response to nitrate	7.79E-03
116	GO:0048316: seed development	8.00E-03
117	GO:0009626: plant-type hypersensitive response	8.25E-03
118	GO:0005992: trehalose biosynthetic process	9.03E-03
119	GO:0009863: salicylic acid mediated signaling pathway	9.03E-03
120	GO:0030150: protein import into mitochondrial matrix	9.03E-03
121	GO:0003333: amino acid transmembrane transport	1.03E-02
122	GO:0031348: negative regulation of defense response	1.10E-02
123	GO:0019748: secondary metabolic process	1.10E-02
124	GO:0009411: response to UV	1.17E-02
125	GO:0010227: floral organ abscission	1.17E-02
126	GO:0009306: protein secretion	1.24E-02
127	GO:0010089: xylem development	1.24E-02
128	GO:0008033: tRNA processing	1.39E-02
129	GO:0010118: stomatal movement	1.39E-02
130	GO:0042391: regulation of membrane potential	1.39E-02
131	GO:0048868: pollen tube development	1.47E-02
132	GO:0006814: sodium ion transport	1.54E-02
133	GO:0009851: auxin biosynthetic process	1.62E-02
134	GO:0006623: protein targeting to vacuole	1.62E-02
135	GO:0006891: intra-Golgi vesicle-mediated transport	1.70E-02
136	GO:0002229: defense response to oomycetes	1.70E-02
137	GO:0007264: small GTPase mediated signal transduction	1.78E-02
138	GO:0030163: protein catabolic process	1.87E-02
139	GO:0016126: sterol biosynthetic process	2.21E-02
140	GO:0009816: defense response to bacterium, incompatible interaction	2.30E-02
141	GO:0042128: nitrate assimilation	2.39E-02
142	GO:0016311: dephosphorylation	2.58E-02
143	GO:0016049: cell growth	2.58E-02
144	GO:0006499: N-terminal protein myristoylation	2.87E-02
145	GO:0009407: toxin catabolic process	2.87E-02
146	GO:0010043: response to zinc ion	2.96E-02
147	GO:0009853: photorespiration	3.16E-02
148	GO:0045087: innate immune response	3.16E-02
149	GO:0046777: protein autophosphorylation	3.32E-02
150	GO:0044550: secondary metabolite biosynthetic process	3.38E-02
151	GO:0006839: mitochondrial transport	3.47E-02
152	GO:0006886: intracellular protein transport	3.83E-02
153	GO:0006869: lipid transport	4.07E-02
154	GO:0009636: response to toxic substance	4.12E-02
155	GO:0016042: lipid catabolic process	4.44E-02
156	GO:0006812: cation transport	4.45E-02
157	GO:0009846: pollen germination	4.45E-02
158	GO:0042538: hyperosmotic salinity response	4.45E-02
159	GO:0009737: response to abscisic acid	4.50E-02
160	GO:0009408: response to heat	4.57E-02
161	GO:0006486: protein glycosylation	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0004631: phosphomevalonate kinase activity	0.00E+00
5	GO:0098808: mRNA cap binding	0.00E+00
6	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
7	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.11E-06
8	GO:0003756: protein disulfide isomerase activity	2.02E-06
9	GO:0004674: protein serine/threonine kinase activity	4.59E-06
10	GO:0050660: flavin adenine dinucleotide binding	2.01E-05
11	GO:0016301: kinase activity	3.11E-05
12	GO:0005524: ATP binding	5.17E-05
13	GO:0009055: electron carrier activity	7.93E-05
14	GO:0048037: cofactor binding	1.73E-04
15	GO:0008909: isochorismate synthase activity	1.73E-04
16	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.92E-04
17	GO:0003994: aconitate hydratase activity	3.92E-04
18	GO:0032934: sterol binding	3.92E-04
19	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.92E-04
20	GO:0051539: 4 iron, 4 sulfur cluster binding	5.19E-04
21	GO:0004383: guanylate cyclase activity	6.40E-04
22	GO:0000030: mannosyltransferase activity	6.40E-04
23	GO:0005093: Rab GDP-dissociation inhibitor activity	6.40E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	6.40E-04
25	GO:0019003: GDP binding	6.40E-04
26	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.40E-04
27	GO:0010178: IAA-amino acid conjugate hydrolase activity	9.13E-04
28	GO:0015189: L-lysine transmembrane transporter activity	9.13E-04
29	GO:0015181: arginine transmembrane transporter activity	9.13E-04
30	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.13E-04
31	GO:0042299: lupeol synthase activity	9.13E-04
32	GO:0004031: aldehyde oxidase activity	1.21E-03
33	GO:0050302: indole-3-acetaldehyde oxidase activity	1.21E-03
34	GO:0015368: calcium:cation antiporter activity	1.21E-03
35	GO:0015369: calcium:proton antiporter activity	1.21E-03
36	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.21E-03
37	GO:0005313: L-glutamate transmembrane transporter activity	1.21E-03
38	GO:0016866: intramolecular transferase activity	1.21E-03
39	GO:0005471: ATP:ADP antiporter activity	1.54E-03
40	GO:0017137: Rab GTPase binding	1.54E-03
41	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.89E-03
42	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.27E-03
43	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.27E-03
44	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.27E-03
45	GO:0004683: calmodulin-dependent protein kinase activity	2.70E-03
46	GO:0030247: polysaccharide binding	2.70E-03
47	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.99E-03
48	GO:0043022: ribosome binding	3.09E-03
49	GO:0015491: cation:cation antiporter activity	3.09E-03
50	GO:0003743: translation initiation factor activity	3.30E-03
51	GO:0005509: calcium ion binding	3.53E-03
52	GO:0008142: oxysterol binding	3.54E-03
53	GO:0030955: potassium ion binding	4.49E-03
54	GO:0015112: nitrate transmembrane transporter activity	4.49E-03
55	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.49E-03
56	GO:0004743: pyruvate kinase activity	4.49E-03
57	GO:0015174: basic amino acid transmembrane transporter activity	4.49E-03
58	GO:0045309: protein phosphorylated amino acid binding	4.49E-03
59	GO:0004568: chitinase activity	4.99E-03
60	GO:0051537: 2 iron, 2 sulfur cluster binding	5.26E-03
61	GO:0019904: protein domain specific binding	5.52E-03
62	GO:0008559: xenobiotic-transporting ATPase activity	5.52E-03
63	GO:0004022: alcohol dehydrogenase (NAD) activity	6.61E-03
64	GO:0015266: protein channel activity	6.61E-03
65	GO:0052689: carboxylic ester hydrolase activity	7.05E-03
66	GO:0005217: intracellular ligand-gated ion channel activity	7.79E-03
67	GO:0004970: ionotropic glutamate receptor activity	7.79E-03
68	GO:0030552: cAMP binding	7.79E-03
69	GO:0030553: cGMP binding	7.79E-03
70	GO:0008061: chitin binding	7.79E-03
71	GO:0003712: transcription cofactor activity	7.79E-03
72	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.60E-03
73	GO:0005507: copper ion binding	8.70E-03
74	GO:0051536: iron-sulfur cluster binding	9.03E-03
75	GO:0003954: NADH dehydrogenase activity	9.03E-03
76	GO:0051082: unfolded protein binding	9.33E-03
77	GO:0005516: calmodulin binding	9.46E-03
78	GO:0005216: ion channel activity	9.69E-03
79	GO:0004298: threonine-type endopeptidase activity	1.03E-02
80	GO:0005249: voltage-gated potassium channel activity	1.39E-02
81	GO:0030551: cyclic nucleotide binding	1.39E-02
82	GO:0008565: protein transporter activity	1.40E-02
83	GO:0005506: iron ion binding	1.45E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
85	GO:0016853: isomerase activity	1.54E-02
86	GO:0010181: FMN binding	1.54E-02
87	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.70E-02
88	GO:0008237: metallopeptidase activity	2.04E-02
89	GO:0042802: identical protein binding	2.06E-02
90	GO:0051213: dioxygenase activity	2.21E-02
91	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.39E-02
92	GO:0004806: triglyceride lipase activity	2.48E-02
93	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.58E-02
94	GO:0005096: GTPase activator activity	2.77E-02
95	GO:0050897: cobalt ion binding	2.96E-02
96	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.16E-02
97	GO:0003746: translation elongation factor activity	3.16E-02
98	GO:0019825: oxygen binding	3.27E-02
99	GO:0004364: glutathione transferase activity	3.68E-02
100	GO:0003924: GTPase activity	4.57E-02
101	GO:0016298: lipase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
4	GO:0005788: endoplasmic reticulum lumen	9.30E-09
5	GO:0005783: endoplasmic reticulum	5.31E-06
6	GO:0005886: plasma membrane	1.91E-05
7	GO:0005911: cell-cell junction	1.73E-04
8	GO:0005829: cytosol	2.79E-04
9	GO:0005968: Rab-protein geranylgeranyltransferase complex	9.13E-04
10	GO:0016282: eukaryotic 43S preinitiation complex	1.89E-03
11	GO:0033290: eukaryotic 48S preinitiation complex	2.27E-03
12	GO:0031305: integral component of mitochondrial inner membrane	3.09E-03
13	GO:0005737: cytoplasm	3.44E-03
14	GO:0000326: protein storage vacuole	3.54E-03
15	GO:0019773: proteasome core complex, alpha-subunit complex	3.54E-03
16	GO:0005774: vacuolar membrane	4.19E-03
17	GO:0030665: clathrin-coated vesicle membrane	4.49E-03
18	GO:0005740: mitochondrial envelope	4.99E-03
19	GO:0017119: Golgi transport complex	4.99E-03
20	GO:0031966: mitochondrial membrane	6.10E-03
21	GO:0005795: Golgi stack	7.79E-03
22	GO:0005747: mitochondrial respiratory chain complex I	8.00E-03
23	GO:0045271: respiratory chain complex I	9.69E-03
24	GO:0005741: mitochondrial outer membrane	1.03E-02
25	GO:0005839: proteasome core complex	1.03E-02
26	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.24E-02
27	GO:0030136: clathrin-coated vesicle	1.32E-02
28	GO:0005759: mitochondrial matrix	1.47E-02
29	GO:0016021: integral component of membrane	1.61E-02
30	GO:0009705: plant-type vacuole membrane	1.62E-02
31	GO:0016592: mediator complex	1.78E-02
32	GO:0009505: plant-type cell wall	2.07E-02
33	GO:0000325: plant-type vacuole	2.96E-02
34	GO:0031902: late endosome membrane	3.58E-02
35	GO:0005576: extracellular region	4.27E-02
36	GO:0000502: proteasome complex	4.68E-02
37	GO:0005635: nuclear envelope	4.91E-02