co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0006482: protein demethylation	0.00E+00
4	GO:0048227: plasma membrane to endosome transport	0.00E+00
5	GO:1903648: positive regulation of chlorophyll catabolic process	5.79E-05
6	GO:0048455: stamen formation	5.79E-05
7	GO:0006805: xenobiotic metabolic process	5.79E-05
8	GO:0080173: male-female gamete recognition during double fertilization	5.79E-05
9	GO:0007034: vacuolar transport	1.06E-04
10	GO:0051603: proteolysis involved in cellular protein catabolic process	1.31E-04
11	GO:0019441: tryptophan catabolic process to kynurenine	1.41E-04
12	GO:0097054: L-glutamate biosynthetic process	1.41E-04
13	GO:1905182: positive regulation of urease activity	1.41E-04
14	GO:0019521: D-gluconate metabolic process	1.41E-04
15	GO:0009812: flavonoid metabolic process	1.41E-04
16	GO:0051788: response to misfolded protein	1.41E-04
17	GO:1902000: homogentisate catabolic process	1.41E-04
18	GO:0071494: cellular response to UV-C	2.40E-04
19	GO:0009072: aromatic amino acid family metabolic process	2.40E-04
20	GO:0010498: proteasomal protein catabolic process	2.40E-04
21	GO:0008333: endosome to lysosome transport	2.40E-04
22	GO:0010359: regulation of anion channel activity	2.40E-04
23	GO:0042147: retrograde transport, endosome to Golgi	2.68E-04
24	GO:0001676: long-chain fatty acid metabolic process	3.49E-04
25	GO:0006624: vacuolar protein processing	3.49E-04
26	GO:0006537: glutamate biosynthetic process	3.49E-04
27	GO:0010255: glucose mediated signaling pathway	3.49E-04
28	GO:0006623: protein targeting to vacuole	3.61E-04
29	GO:0007264: small GTPase mediated signal transduction	4.13E-04
30	GO:0010150: leaf senescence	4.24E-04
31	GO:0010222: stem vascular tissue pattern formation	4.66E-04
32	GO:0019676: ammonia assimilation cycle	4.66E-04
33	GO:1903830: magnesium ion transmembrane transport	4.66E-04
34	GO:1902584: positive regulation of response to water deprivation	4.66E-04
35	GO:0010363: regulation of plant-type hypersensitive response	4.66E-04
36	GO:0009555: pollen development	5.33E-04
37	GO:0045927: positive regulation of growth	5.92E-04
38	GO:0006974: cellular response to DNA damage stimulus	6.17E-04
39	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.24E-04
40	GO:0006751: glutathione catabolic process	7.24E-04
41	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	7.24E-04
42	GO:0043248: proteasome assembly	7.24E-04
43	GO:0035435: phosphate ion transmembrane transport	7.24E-04
44	GO:1902456: regulation of stomatal opening	7.24E-04
45	GO:0006499: N-terminal protein myristoylation	7.87E-04
46	GO:0048280: vesicle fusion with Golgi apparatus	8.63E-04
47	GO:0010189: vitamin E biosynthetic process	8.63E-04
48	GO:0034389: lipid particle organization	8.63E-04
49	GO:0015693: magnesium ion transport	1.01E-03
50	GO:0050790: regulation of catalytic activity	1.01E-03
51	GO:0006401: RNA catabolic process	1.01E-03
52	GO:0048528: post-embryonic root development	1.01E-03
53	GO:0080186: developmental vegetative growth	1.01E-03
54	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.01E-03
55	GO:1900057: positive regulation of leaf senescence	1.01E-03
56	GO:0006605: protein targeting	1.16E-03
57	GO:0016559: peroxisome fission	1.16E-03
58	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.16E-03
59	GO:0000373: Group II intron splicing	1.48E-03
60	GO:0006098: pentose-phosphate shunt	1.48E-03
61	GO:0009821: alkaloid biosynthetic process	1.48E-03
62	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.48E-03
63	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.65E-03
64	GO:0000103: sulfate assimilation	1.83E-03
65	GO:0043069: negative regulation of programmed cell death	1.83E-03
66	GO:0006896: Golgi to vacuole transport	1.83E-03
67	GO:0009626: plant-type hypersensitive response	1.90E-03
68	GO:0009620: response to fungus	1.96E-03
69	GO:0043085: positive regulation of catalytic activity	2.02E-03
70	GO:0000266: mitochondrial fission	2.21E-03
71	GO:0006807: nitrogen compound metabolic process	2.41E-03
72	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.41E-03
73	GO:0009651: response to salt stress	2.43E-03
74	GO:0009901: anther dehiscence	2.82E-03
75	GO:0006071: glycerol metabolic process	3.04E-03
76	GO:0034976: response to endoplasmic reticulum stress	3.04E-03
77	GO:0030433: ubiquitin-dependent ERAD pathway	3.95E-03
78	GO:0007005: mitochondrion organization	3.95E-03
79	GO:0010468: regulation of gene expression	4.38E-03
80	GO:0006511: ubiquitin-dependent protein catabolic process	4.70E-03
81	GO:0034220: ion transmembrane transport	4.95E-03
82	GO:0042631: cellular response to water deprivation	4.95E-03
83	GO:0006662: glycerol ether metabolic process	5.21E-03
84	GO:0071472: cellular response to salt stress	5.21E-03
85	GO:0006891: intra-Golgi vesicle-mediated transport	6.02E-03
86	GO:0010193: response to ozone	6.02E-03
87	GO:0009630: gravitropism	6.31E-03
88	GO:0031047: gene silencing by RNA	6.31E-03
89	GO:0009723: response to ethylene	6.55E-03
90	GO:0030163: protein catabolic process	6.59E-03
91	GO:0006914: autophagy	6.88E-03
92	GO:0009615: response to virus	7.78E-03
93	GO:0010029: regulation of seed germination	8.08E-03
94	GO:0006508: proteolysis	8.42E-03
95	GO:0006888: ER to Golgi vesicle-mediated transport	8.71E-03
96	GO:0048767: root hair elongation	9.69E-03
97	GO:0009407: toxin catabolic process	1.00E-02
98	GO:0009751: response to salicylic acid	1.02E-02
99	GO:0010043: response to zinc ion	1.04E-02
100	GO:0009910: negative regulation of flower development	1.04E-02
101	GO:0010119: regulation of stomatal movement	1.04E-02
102	GO:0015031: protein transport	1.06E-02
103	GO:0009753: response to jasmonic acid	1.11E-02
104	GO:0034599: cellular response to oxidative stress	1.14E-02
105	GO:0030001: metal ion transport	1.21E-02
106	GO:0006631: fatty acid metabolic process	1.25E-02
107	GO:0009744: response to sucrose	1.32E-02
108	GO:0000209: protein polyubiquitination	1.36E-02
109	GO:0009636: response to toxic substance	1.44E-02
110	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.51E-02
111	GO:0042538: hyperosmotic salinity response	1.55E-02
112	GO:0055114: oxidation-reduction process	1.71E-02
113	GO:0016569: covalent chromatin modification	2.01E-02
114	GO:0009553: embryo sac development	2.05E-02
115	GO:0045893: positive regulation of transcription, DNA-templated	2.12E-02
116	GO:0018105: peptidyl-serine phosphorylation	2.14E-02
117	GO:0009058: biosynthetic process	2.55E-02
118	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.35E-02
119	GO:0009658: chloroplast organization	4.22E-02
120	GO:0006970: response to osmotic stress	4.45E-02
121	GO:0048366: leaf development	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0051723: protein methylesterase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
5	GO:0015930: glutamate synthase activity	0.00E+00
6	GO:0016041: glutamate synthase (ferredoxin) activity	5.79E-05
7	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	5.79E-05
8	GO:0004112: cyclic-nucleotide phosphodiesterase activity	5.79E-05
9	GO:0019786: Atg8-specific protease activity	5.79E-05
10	GO:0005515: protein binding	1.31E-04
11	GO:0019779: Atg8 activating enzyme activity	1.41E-04
12	GO:0004061: arylformamidase activity	1.41E-04
13	GO:0016805: dipeptidase activity	2.40E-04
14	GO:0005093: Rab GDP-dissociation inhibitor activity	2.40E-04
15	GO:0016151: nickel cation binding	2.40E-04
16	GO:0005047: signal recognition particle binding	2.40E-04
17	GO:0000975: regulatory region DNA binding	2.40E-04
18	GO:0003840: gamma-glutamyltransferase activity	2.40E-04
19	GO:0036374: glutathione hydrolase activity	2.40E-04
20	GO:0001653: peptide receptor activity	3.49E-04
21	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	3.49E-04
22	GO:0004197: cysteine-type endopeptidase activity	4.13E-04
23	GO:0019776: Atg8 ligase activity	4.66E-04
24	GO:0004301: epoxide hydrolase activity	4.66E-04
25	GO:0051538: 3 iron, 4 sulfur cluster binding	5.92E-04
26	GO:0036402: proteasome-activating ATPase activity	7.24E-04
27	GO:0031593: polyubiquitin binding	7.24E-04
28	GO:0004656: procollagen-proline 4-dioxygenase activity	8.63E-04
29	GO:0102391: decanoate--CoA ligase activity	8.63E-04
30	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.63E-04
31	GO:0004467: long-chain fatty acid-CoA ligase activity	1.01E-03
32	GO:0008235: metalloexopeptidase activity	1.01E-03
33	GO:0005525: GTP binding	1.12E-03
34	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.48E-03
35	GO:0003924: GTPase activity	1.55E-03
36	GO:0016844: strictosidine synthase activity	1.65E-03
37	GO:0004177: aminopeptidase activity	2.02E-03
38	GO:0005315: inorganic phosphate transmembrane transporter activity	2.41E-03
39	GO:0015095: magnesium ion transmembrane transporter activity	2.41E-03
40	GO:0031624: ubiquitin conjugating enzyme binding	2.62E-03
41	GO:0004175: endopeptidase activity	2.62E-03
42	GO:0017025: TBP-class protein binding	2.82E-03
43	GO:0031418: L-ascorbic acid binding	3.26E-03
44	GO:0043424: protein histidine kinase binding	3.49E-03
45	GO:0004298: threonine-type endopeptidase activity	3.72E-03
46	GO:0047134: protein-disulfide reductase activity	4.69E-03
47	GO:0046873: metal ion transmembrane transporter activity	5.21E-03
48	GO:0005516: calmodulin binding	5.35E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	5.48E-03
50	GO:0004872: receptor activity	5.75E-03
51	GO:0004518: nuclease activity	6.31E-03
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.59E-03
53	GO:0015250: water channel activity	7.78E-03
54	GO:0009931: calcium-dependent protein serine/threonine kinase activity	8.40E-03
55	GO:0004683: calmodulin-dependent protein kinase activity	8.71E-03
56	GO:0005215: transporter activity	8.86E-03
57	GO:0005096: GTPase activator activity	9.69E-03
58	GO:0030145: manganese ion binding	1.04E-02
59	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.11E-02
60	GO:0000149: SNARE binding	1.18E-02
61	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.18E-02
62	GO:0004364: glutathione transferase activity	1.28E-02
63	GO:0005484: SNAP receptor activity	1.32E-02
64	GO:0016887: ATPase activity	1.61E-02
65	GO:0008234: cysteine-type peptidase activity	1.75E-02
66	GO:0015035: protein disulfide oxidoreductase activity	2.14E-02
67	GO:0004386: helicase activity	2.23E-02
68	GO:0015297: antiporter activity	2.99E-02
69	GO:0004601: peroxidase activity	4.22E-02
70	GO:0016788: hydrolase activity, acting on ester bonds	4.28E-02
71	GO:0008233: peptidase activity	4.86E-02
72	GO:0016491: oxidoreductase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005773: vacuole	1.41E-07
4	GO:0005783: endoplasmic reticulum	4.71E-06
5	GO:0008540: proteasome regulatory particle, base subcomplex	4.74E-05
6	GO:0031902: late endosome membrane	7.15E-05
7	GO:0000502: proteasome complex	1.25E-04
8	GO:0005774: vacuolar membrane	1.33E-04
9	GO:0030139: endocytic vesicle	2.40E-04
10	GO:0005775: vacuolar lumen	3.49E-04
11	GO:0000323: lytic vacuole	3.49E-04
12	GO:0005776: autophagosome	4.66E-04
13	GO:0005777: peroxisome	6.58E-04
14	GO:0005771: multivesicular body	7.24E-04
15	GO:0030904: retromer complex	7.24E-04
16	GO:0030140: trans-Golgi network transport vesicle	7.24E-04
17	GO:0005829: cytosol	7.37E-04
18	GO:0031597: cytosolic proteasome complex	8.63E-04
19	GO:0031595: nuclear proteasome complex	1.01E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	1.16E-03
21	GO:0000421: autophagosome membrane	1.16E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.32E-03
23	GO:0005811: lipid particle	1.32E-03
24	GO:0016020: membrane	1.44E-03
25	GO:0016602: CCAAT-binding factor complex	2.41E-03
26	GO:0005764: lysosome	2.62E-03
27	GO:0005789: endoplasmic reticulum membrane	2.92E-03
28	GO:0005737: cytoplasm	2.98E-03
29	GO:0005839: proteasome core complex	3.72E-03
30	GO:0005741: mitochondrial outer membrane	3.72E-03
31	GO:0031410: cytoplasmic vesicle	3.95E-03
32	GO:0005770: late endosome	5.21E-03
33	GO:0019898: extrinsic component of membrane	5.75E-03
34	GO:0005778: peroxisomal membrane	7.18E-03
35	GO:0000151: ubiquitin ligase complex	9.36E-03
36	GO:0000325: plant-type vacuole	1.04E-02
37	GO:0031201: SNARE complex	1.25E-02
38	GO:0005794: Golgi apparatus	1.58E-02
39	GO:0005802: trans-Golgi network	2.96E-02
40	GO:0005615: extracellular space	3.35E-02
41	GO:0005768: endosome	3.36E-02
42	GO:0005874: microtubule	4.80E-02