GO Enrichment Analysis of Co-expressed Genes with
AT2G47910
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 6 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 7 | GO:0017038: protein import | 0.00E+00 |
| 8 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 9 | GO:0060416: response to growth hormone | 0.00E+00 |
| 10 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 11 | GO:0006412: translation | 2.78E-09 |
| 12 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.06E-06 |
| 13 | GO:0009658: chloroplast organization | 2.28E-06 |
| 14 | GO:0032544: plastid translation | 4.66E-06 |
| 15 | GO:0042254: ribosome biogenesis | 2.92E-05 |
| 16 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.09E-05 |
| 17 | GO:1902458: positive regulation of stomatal opening | 2.09E-04 |
| 18 | GO:0034337: RNA folding | 2.09E-04 |
| 19 | GO:0000476: maturation of 4.5S rRNA | 2.09E-04 |
| 20 | GO:0000967: rRNA 5'-end processing | 2.09E-04 |
| 21 | GO:0043489: RNA stabilization | 2.09E-04 |
| 22 | GO:0000481: maturation of 5S rRNA | 2.09E-04 |
| 23 | GO:0042371: vitamin K biosynthetic process | 2.09E-04 |
| 24 | GO:0071482: cellular response to light stimulus | 2.19E-04 |
| 25 | GO:0010206: photosystem II repair | 2.65E-04 |
| 26 | GO:0009793: embryo development ending in seed dormancy | 3.04E-04 |
| 27 | GO:0009773: photosynthetic electron transport in photosystem I | 4.29E-04 |
| 28 | GO:0006352: DNA-templated transcription, initiation | 4.29E-04 |
| 29 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.66E-04 |
| 30 | GO:0034470: ncRNA processing | 4.66E-04 |
| 31 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.66E-04 |
| 32 | GO:0034755: iron ion transmembrane transport | 4.66E-04 |
| 33 | GO:0018026: peptidyl-lysine monomethylation | 4.66E-04 |
| 34 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.66E-04 |
| 35 | GO:0080148: negative regulation of response to water deprivation | 4.66E-04 |
| 36 | GO:0019253: reductive pentose-phosphate cycle | 6.29E-04 |
| 37 | GO:0010207: photosystem II assembly | 6.29E-04 |
| 38 | GO:0090351: seedling development | 7.02E-04 |
| 39 | GO:0005977: glycogen metabolic process | 7.59E-04 |
| 40 | GO:0006011: UDP-glucose metabolic process | 7.59E-04 |
| 41 | GO:0010581: regulation of starch biosynthetic process | 7.59E-04 |
| 42 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 7.59E-04 |
| 43 | GO:0006954: inflammatory response | 7.59E-04 |
| 44 | GO:0006518: peptide metabolic process | 7.59E-04 |
| 45 | GO:0006418: tRNA aminoacylation for protein translation | 9.49E-04 |
| 46 | GO:0009409: response to cold | 9.71E-04 |
| 47 | GO:0016556: mRNA modification | 1.08E-03 |
| 48 | GO:2001141: regulation of RNA biosynthetic process | 1.08E-03 |
| 49 | GO:0010109: regulation of photosynthesis | 1.44E-03 |
| 50 | GO:0006749: glutathione metabolic process | 1.44E-03 |
| 51 | GO:0071483: cellular response to blue light | 1.44E-03 |
| 52 | GO:0006808: regulation of nitrogen utilization | 1.44E-03 |
| 53 | GO:0006096: glycolytic process | 1.50E-03 |
| 54 | GO:0009646: response to absence of light | 1.81E-03 |
| 55 | GO:0009247: glycolipid biosynthetic process | 1.83E-03 |
| 56 | GO:0032543: mitochondrial translation | 1.83E-03 |
| 57 | GO:0006564: L-serine biosynthetic process | 1.83E-03 |
| 58 | GO:0010236: plastoquinone biosynthetic process | 1.83E-03 |
| 59 | GO:0000470: maturation of LSU-rRNA | 2.26E-03 |
| 60 | GO:0016554: cytidine to uridine editing | 2.26E-03 |
| 61 | GO:0032973: amino acid export | 2.26E-03 |
| 62 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.26E-03 |
| 63 | GO:0010190: cytochrome b6f complex assembly | 2.26E-03 |
| 64 | GO:0010942: positive regulation of cell death | 2.26E-03 |
| 65 | GO:0006354: DNA-templated transcription, elongation | 2.26E-03 |
| 66 | GO:0042026: protein refolding | 2.71E-03 |
| 67 | GO:1901259: chloroplast rRNA processing | 2.71E-03 |
| 68 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.71E-03 |
| 69 | GO:0006458: 'de novo' protein folding | 2.71E-03 |
| 70 | GO:0010189: vitamin E biosynthetic process | 2.71E-03 |
| 71 | GO:0010027: thylakoid membrane organization | 2.98E-03 |
| 72 | GO:0009790: embryo development | 3.07E-03 |
| 73 | GO:0043090: amino acid import | 3.20E-03 |
| 74 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.20E-03 |
| 75 | GO:0006821: chloride transport | 3.20E-03 |
| 76 | GO:0052543: callose deposition in cell wall | 3.71E-03 |
| 77 | GO:0006605: protein targeting | 3.71E-03 |
| 78 | GO:0019375: galactolipid biosynthetic process | 3.71E-03 |
| 79 | GO:0010078: maintenance of root meristem identity | 3.71E-03 |
| 80 | GO:0009704: de-etiolation | 3.71E-03 |
| 81 | GO:0032508: DNA duplex unwinding | 3.71E-03 |
| 82 | GO:2000070: regulation of response to water deprivation | 3.71E-03 |
| 83 | GO:0009451: RNA modification | 3.90E-03 |
| 84 | GO:0009657: plastid organization | 4.24E-03 |
| 85 | GO:0019430: removal of superoxide radicals | 4.24E-03 |
| 86 | GO:0043562: cellular response to nitrogen levels | 4.24E-03 |
| 87 | GO:0017004: cytochrome complex assembly | 4.24E-03 |
| 88 | GO:0048527: lateral root development | 4.48E-03 |
| 89 | GO:0009821: alkaloid biosynthetic process | 4.80E-03 |
| 90 | GO:0080144: amino acid homeostasis | 4.80E-03 |
| 91 | GO:0010205: photoinhibition | 5.38E-03 |
| 92 | GO:1900865: chloroplast RNA modification | 5.38E-03 |
| 93 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.38E-03 |
| 94 | GO:0009684: indoleacetic acid biosynthetic process | 6.62E-03 |
| 95 | GO:0019684: photosynthesis, light reaction | 6.62E-03 |
| 96 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.62E-03 |
| 97 | GO:0009073: aromatic amino acid family biosynthetic process | 6.62E-03 |
| 98 | GO:0043085: positive regulation of catalytic activity | 6.62E-03 |
| 99 | GO:0006879: cellular iron ion homeostasis | 6.62E-03 |
| 100 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.62E-03 |
| 101 | GO:0009735: response to cytokinin | 6.65E-03 |
| 102 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.28E-03 |
| 103 | GO:0045037: protein import into chloroplast stroma | 7.28E-03 |
| 104 | GO:0009767: photosynthetic electron transport chain | 7.96E-03 |
| 105 | GO:0010588: cotyledon vascular tissue pattern formation | 7.96E-03 |
| 106 | GO:0010628: positive regulation of gene expression | 7.96E-03 |
| 107 | GO:0006006: glucose metabolic process | 7.96E-03 |
| 108 | GO:0048467: gynoecium development | 8.66E-03 |
| 109 | GO:0010020: chloroplast fission | 8.66E-03 |
| 110 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.01E-02 |
| 111 | GO:0006457: protein folding | 1.13E-02 |
| 112 | GO:0019915: lipid storage | 1.25E-02 |
| 113 | GO:0061077: chaperone-mediated protein folding | 1.25E-02 |
| 114 | GO:0006730: one-carbon metabolic process | 1.33E-02 |
| 115 | GO:0016226: iron-sulfur cluster assembly | 1.33E-02 |
| 116 | GO:0009561: megagametogenesis | 1.50E-02 |
| 117 | GO:0009306: protein secretion | 1.50E-02 |
| 118 | GO:0016117: carotenoid biosynthetic process | 1.59E-02 |
| 119 | GO:0009058: biosynthetic process | 1.61E-02 |
| 120 | GO:0006508: proteolysis | 1.63E-02 |
| 121 | GO:0080022: primary root development | 1.68E-02 |
| 122 | GO:0000413: protein peptidyl-prolyl isomerization | 1.68E-02 |
| 123 | GO:0010087: phloem or xylem histogenesis | 1.68E-02 |
| 124 | GO:0042744: hydrogen peroxide catabolic process | 1.74E-02 |
| 125 | GO:0009741: response to brassinosteroid | 1.77E-02 |
| 126 | GO:0009958: positive gravitropism | 1.77E-02 |
| 127 | GO:0009851: auxin biosynthetic process | 1.96E-02 |
| 128 | GO:0009791: post-embryonic development | 1.96E-02 |
| 129 | GO:0048825: cotyledon development | 1.96E-02 |
| 130 | GO:0032502: developmental process | 2.15E-02 |
| 131 | GO:0030163: protein catabolic process | 2.25E-02 |
| 132 | GO:0010090: trichome morphogenesis | 2.25E-02 |
| 133 | GO:0048481: plant ovule development | 3.23E-02 |
| 134 | GO:0009407: toxin catabolic process | 3.46E-02 |
| 135 | GO:0009631: cold acclimation | 3.58E-02 |
| 136 | GO:0009853: photorespiration | 3.82E-02 |
| 137 | GO:0045087: innate immune response | 3.82E-02 |
| 138 | GO:0009637: response to blue light | 3.82E-02 |
| 139 | GO:0046686: response to cadmium ion | 4.21E-02 |
| 140 | GO:0009744: response to sucrose | 4.57E-02 |
| 141 | GO:0051707: response to other organism | 4.57E-02 |
| 142 | GO:0010114: response to red light | 4.57E-02 |
| 143 | GO:0015979: photosynthesis | 4.61E-02 |
| 144 | GO:0009636: response to toxic substance | 4.97E-02 |
| 145 | GO:0055114: oxidation-reduction process | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 3 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 5 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 6 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 1.24E-16 |
| 9 | GO:0003735: structural constituent of ribosome | 1.61E-11 |
| 10 | GO:0002161: aminoacyl-tRNA editing activity | 7.54E-06 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.10E-06 |
| 12 | GO:0001053: plastid sigma factor activity | 3.17E-05 |
| 13 | GO:0016987: sigma factor activity | 3.17E-05 |
| 14 | GO:0005528: FK506 binding | 5.00E-05 |
| 15 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.09E-04 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 2.09E-04 |
| 17 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.09E-04 |
| 18 | GO:0003723: RNA binding | 4.10E-04 |
| 19 | GO:0004618: phosphoglycerate kinase activity | 4.66E-04 |
| 20 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 4.66E-04 |
| 21 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 4.66E-04 |
| 22 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.66E-04 |
| 23 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.66E-04 |
| 24 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.66E-04 |
| 25 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.66E-04 |
| 26 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 4.66E-04 |
| 27 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.66E-04 |
| 28 | GO:0004222: metalloendopeptidase activity | 5.13E-04 |
| 29 | GO:0031072: heat shock protein binding | 5.58E-04 |
| 30 | GO:0008266: poly(U) RNA binding | 6.29E-04 |
| 31 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 7.59E-04 |
| 32 | GO:0017150: tRNA dihydrouridine synthase activity | 7.59E-04 |
| 33 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 7.59E-04 |
| 34 | GO:0008097: 5S rRNA binding | 1.08E-03 |
| 35 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 1.08E-03 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.08E-03 |
| 37 | GO:0035250: UDP-galactosyltransferase activity | 1.08E-03 |
| 38 | GO:0003729: mRNA binding | 1.19E-03 |
| 39 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.21E-03 |
| 40 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.44E-03 |
| 41 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.44E-03 |
| 42 | GO:0016279: protein-lysine N-methyltransferase activity | 1.44E-03 |
| 43 | GO:0004812: aminoacyl-tRNA ligase activity | 1.45E-03 |
| 44 | GO:0008374: O-acyltransferase activity | 1.83E-03 |
| 45 | GO:0016846: carbon-sulfur lyase activity | 1.83E-03 |
| 46 | GO:0051082: unfolded protein binding | 1.90E-03 |
| 47 | GO:0005247: voltage-gated chloride channel activity | 2.26E-03 |
| 48 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.71E-03 |
| 49 | GO:0004519: endonuclease activity | 3.62E-03 |
| 50 | GO:0008236: serine-type peptidase activity | 3.69E-03 |
| 51 | GO:0008312: 7S RNA binding | 3.71E-03 |
| 52 | GO:0004033: aldo-keto reductase (NADP) activity | 3.71E-03 |
| 53 | GO:0008135: translation factor activity, RNA binding | 4.24E-03 |
| 54 | GO:0003746: translation elongation factor activity | 4.91E-03 |
| 55 | GO:0005381: iron ion transmembrane transporter activity | 5.38E-03 |
| 56 | GO:0016844: strictosidine synthase activity | 5.38E-03 |
| 57 | GO:0008047: enzyme activator activity | 5.99E-03 |
| 58 | GO:0044183: protein binding involved in protein folding | 6.62E-03 |
| 59 | GO:0000049: tRNA binding | 7.28E-03 |
| 60 | GO:0051287: NAD binding | 7.66E-03 |
| 61 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.66E-03 |
| 62 | GO:0051536: iron-sulfur cluster binding | 1.09E-02 |
| 63 | GO:0043424: protein histidine kinase binding | 1.17E-02 |
| 64 | GO:0004252: serine-type endopeptidase activity | 1.70E-02 |
| 65 | GO:0004791: thioredoxin-disulfide reductase activity | 1.86E-02 |
| 66 | GO:0010181: FMN binding | 1.86E-02 |
| 67 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.25E-02 |
| 68 | GO:0016787: hydrolase activity | 2.40E-02 |
| 69 | GO:0003824: catalytic activity | 2.53E-02 |
| 70 | GO:0016597: amino acid binding | 2.57E-02 |
| 71 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.11E-02 |
| 72 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.11E-02 |
| 73 | GO:0008168: methyltransferase activity | 3.15E-02 |
| 74 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.58E-02 |
| 75 | GO:0050660: flavin adenine dinucleotide binding | 3.78E-02 |
| 76 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.94E-02 |
| 77 | GO:0050661: NADP binding | 4.19E-02 |
| 78 | GO:0004364: glutathione transferase activity | 4.45E-02 |
| 79 | GO:0004185: serine-type carboxypeptidase activity | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0000408: EKC/KEOPS complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 8.36E-71 |
| 4 | GO:0009570: chloroplast stroma | 3.46E-37 |
| 5 | GO:0009941: chloroplast envelope | 3.47E-28 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.93E-25 |
| 7 | GO:0009579: thylakoid | 6.80E-12 |
| 8 | GO:0009534: chloroplast thylakoid | 7.27E-12 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 2.39E-10 |
| 10 | GO:0005840: ribosome | 2.92E-10 |
| 11 | GO:0000311: plastid large ribosomal subunit | 3.16E-07 |
| 12 | GO:0009295: nucleoid | 5.27E-07 |
| 13 | GO:0009706: chloroplast inner membrane | 2.72E-05 |
| 14 | GO:0000312: plastid small ribosomal subunit | 2.94E-05 |
| 15 | GO:0031977: thylakoid lumen | 7.79E-05 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.37E-04 |
| 17 | GO:0009536: plastid | 2.04E-04 |
| 18 | GO:0009547: plastid ribosome | 2.09E-04 |
| 19 | GO:0000428: DNA-directed RNA polymerase complex | 2.09E-04 |
| 20 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.09E-04 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.65E-04 |
| 22 | GO:0080085: signal recognition particle, chloroplast targeting | 4.66E-04 |
| 23 | GO:0015934: large ribosomal subunit | 5.45E-04 |
| 24 | GO:0033281: TAT protein transport complex | 7.59E-04 |
| 25 | GO:0042646: plastid nucleoid | 1.08E-03 |
| 26 | GO:0034707: chloride channel complex | 2.26E-03 |
| 27 | GO:0010319: stromule | 2.66E-03 |
| 28 | GO:0016363: nuclear matrix | 2.71E-03 |
| 29 | GO:0005762: mitochondrial large ribosomal subunit | 2.71E-03 |
| 30 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.24E-03 |
| 31 | GO:0022627: cytosolic small ribosomal subunit | 5.42E-03 |
| 32 | GO:0032040: small-subunit processome | 7.28E-03 |
| 33 | GO:0019013: viral nucleocapsid | 7.96E-03 |
| 34 | GO:0009508: plastid chromosome | 7.96E-03 |
| 35 | GO:0030095: chloroplast photosystem II | 8.66E-03 |
| 36 | GO:0009654: photosystem II oxygen evolving complex | 1.17E-02 |
| 37 | GO:0015935: small ribosomal subunit | 1.25E-02 |
| 38 | GO:0010287: plastoglobule | 1.45E-02 |
| 39 | GO:0043231: intracellular membrane-bounded organelle | 1.62E-02 |
| 40 | GO:0009522: photosystem I | 1.86E-02 |
| 41 | GO:0005759: mitochondrial matrix | 1.92E-02 |
| 42 | GO:0019898: extrinsic component of membrane | 1.96E-02 |
| 43 | GO:0016020: membrane | 1.99E-02 |
| 44 | GO:0030529: intracellular ribonucleoprotein complex | 2.67E-02 |
| 45 | GO:0022626: cytosolic ribosome | 2.78E-02 |
| 46 | GO:0031969: chloroplast membrane | 4.04E-02 |
| 47 | GO:0022625: cytosolic large ribosomal subunit | 4.25E-02 |