Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:1901698: response to nitrogen compound0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0032544: plastid translation4.51E-07
6GO:0015995: chlorophyll biosynthetic process7.90E-07
7GO:0006833: water transport9.32E-06
8GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.77E-05
9GO:0034220: ion transmembrane transport4.24E-05
10GO:0080170: hydrogen peroxide transmembrane transport5.99E-05
11GO:0010019: chloroplast-nucleus signaling pathway3.12E-04
12GO:0042547: cell wall modification involved in multidimensional cell growth4.23E-04
13GO:2000021: regulation of ion homeostasis4.23E-04
14GO:0034628: 'de novo' NAD biosynthetic process from aspartate4.23E-04
15GO:0034337: RNA folding4.23E-04
16GO:0071588: hydrogen peroxide mediated signaling pathway4.23E-04
17GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.23E-04
18GO:0070509: calcium ion import4.23E-04
19GO:0007263: nitric oxide mediated signal transduction4.23E-04
20GO:0043266: regulation of potassium ion transport4.23E-04
21GO:0046520: sphingoid biosynthetic process4.23E-04
22GO:0010480: microsporocyte differentiation4.23E-04
23GO:0006723: cuticle hydrocarbon biosynthetic process4.23E-04
24GO:0000481: maturation of 5S rRNA4.23E-04
25GO:0006824: cobalt ion transport4.23E-04
26GO:0042335: cuticle development5.17E-04
27GO:0006810: transport5.20E-04
28GO:0045490: pectin catabolic process6.90E-04
29GO:0015979: photosynthesis6.91E-04
30GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.16E-04
31GO:0006695: cholesterol biosynthetic process9.16E-04
32GO:0010115: regulation of abscisic acid biosynthetic process9.16E-04
33GO:0034755: iron ion transmembrane transport9.16E-04
34GO:0055114: oxidation-reduction process9.44E-04
35GO:0010027: thylakoid membrane organization1.18E-03
36GO:0042128: nitrate assimilation1.36E-03
37GO:0009826: unidimensional cell growth1.38E-03
38GO:0006412: translation1.39E-03
39GO:0010411: xyloglucan metabolic process1.45E-03
40GO:0009658: chloroplast organization1.48E-03
41GO:0051176: positive regulation of sulfur metabolic process1.49E-03
42GO:0015840: urea transport1.49E-03
43GO:0071705: nitrogen compound transport1.49E-03
44GO:0045493: xylan catabolic process1.49E-03
45GO:0043447: alkane biosynthetic process1.49E-03
46GO:0006013: mannose metabolic process1.49E-03
47GO:0010207: photosystem II assembly1.70E-03
48GO:0010025: wax biosynthetic process2.13E-03
49GO:2001141: regulation of RNA biosynthetic process2.15E-03
50GO:0034059: response to anoxia2.15E-03
51GO:0006424: glutamyl-tRNA aminoacylation2.15E-03
52GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.15E-03
53GO:0005992: trehalose biosynthetic process2.36E-03
54GO:0010037: response to carbon dioxide2.89E-03
55GO:0006808: regulation of nitrogen utilization2.89E-03
56GO:0015976: carbon utilization2.89E-03
57GO:0071249: cellular response to nitrate2.89E-03
58GO:0006183: GTP biosynthetic process2.89E-03
59GO:2000122: negative regulation of stomatal complex development2.89E-03
60GO:0045727: positive regulation of translation2.89E-03
61GO:0030104: water homeostasis2.89E-03
62GO:0009735: response to cytokinin3.00E-03
63GO:0009435: NAD biosynthetic process3.71E-03
64GO:0009247: glycolipid biosynthetic process3.71E-03
65GO:0032543: mitochondrial translation3.71E-03
66GO:0006564: L-serine biosynthetic process3.71E-03
67GO:0000741: karyogamy4.59E-03
68GO:0006561: proline biosynthetic process4.59E-03
69GO:0010405: arabinogalactan protein metabolic process4.59E-03
70GO:0006751: glutathione catabolic process4.59E-03
71GO:0042549: photosystem II stabilization4.59E-03
72GO:0016554: cytidine to uridine editing4.59E-03
73GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.59E-03
74GO:0018258: protein O-linked glycosylation via hydroxyproline4.59E-03
75GO:0009741: response to brassinosteroid4.69E-03
76GO:0006857: oligopeptide transport4.95E-03
77GO:0071555: cell wall organization4.96E-03
78GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.53E-03
79GO:0042372: phylloquinone biosynthetic process5.53E-03
80GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.53E-03
81GO:0006694: steroid biosynthetic process5.53E-03
82GO:0055085: transmembrane transport5.74E-03
83GO:0016132: brassinosteroid biosynthetic process5.80E-03
84GO:0000302: response to reactive oxygen species5.80E-03
85GO:0010583: response to cyclopentenone6.20E-03
86GO:0042254: ribosome biogenesis6.39E-03
87GO:0050829: defense response to Gram-negative bacterium6.54E-03
88GO:0009610: response to symbiotic fungus6.54E-03
89GO:0009772: photosynthetic electron transport in photosystem II6.54E-03
90GO:0030497: fatty acid elongation6.54E-03
91GO:0048437: floral organ development6.54E-03
92GO:0009645: response to low light intensity stimulus6.54E-03
93GO:0010444: guard mother cell differentiation6.54E-03
94GO:0051510: regulation of unidimensional cell growth6.54E-03
95GO:0007155: cell adhesion7.60E-03
96GO:0006402: mRNA catabolic process7.60E-03
97GO:0030091: protein repair7.60E-03
98GO:0008610: lipid biosynthetic process7.60E-03
99GO:0019375: galactolipid biosynthetic process7.60E-03
100GO:0032508: DNA duplex unwinding7.60E-03
101GO:0009808: lignin metabolic process8.73E-03
102GO:0009932: cell tip growth8.73E-03
103GO:0071482: cellular response to light stimulus8.73E-03
104GO:0009060: aerobic respiration9.92E-03
105GO:0009051: pentose-phosphate shunt, oxidative branch9.92E-03
106GO:0010206: photosystem II repair9.92E-03
107GO:0033384: geranyl diphosphate biosynthetic process9.92E-03
108GO:0045337: farnesyl diphosphate biosynthetic process9.92E-03
109GO:0006783: heme biosynthetic process9.92E-03
110GO:0016311: dephosphorylation1.04E-02
111GO:0018298: protein-chromophore linkage1.10E-02
112GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.12E-02
113GO:0009638: phototropism1.12E-02
114GO:1900865: chloroplast RNA modification1.12E-02
115GO:0000160: phosphorelay signal transduction system1.16E-02
116GO:0009416: response to light stimulus1.17E-02
117GO:0009688: abscisic acid biosynthetic process1.24E-02
118GO:0043069: negative regulation of programmed cell death1.24E-02
119GO:0009870: defense response signaling pathway, resistance gene-dependent1.24E-02
120GO:0006782: protoporphyrinogen IX biosynthetic process1.24E-02
121GO:0006633: fatty acid biosynthetic process1.27E-02
122GO:0009750: response to fructose1.38E-02
123GO:0006415: translational termination1.38E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.38E-02
125GO:0048229: gametophyte development1.38E-02
126GO:0010015: root morphogenesis1.38E-02
127GO:0000038: very long-chain fatty acid metabolic process1.38E-02
128GO:0043085: positive regulation of catalytic activity1.38E-02
129GO:0009773: photosynthetic electron transport in photosystem I1.38E-02
130GO:0006352: DNA-templated transcription, initiation1.38E-02
131GO:0007623: circadian rhythm1.43E-02
132GO:0034599: cellular response to oxidative stress1.46E-02
133GO:0015706: nitrate transport1.52E-02
134GO:2000028: regulation of photoperiodism, flowering1.66E-02
135GO:0050826: response to freezing1.66E-02
136GO:0009718: anthocyanin-containing compound biosynthetic process1.66E-02
137GO:0010075: regulation of meristem growth1.66E-02
138GO:0009767: photosynthetic electron transport chain1.66E-02
139GO:0030048: actin filament-based movement1.66E-02
140GO:0006006: glucose metabolic process1.66E-02
141GO:0009640: photomorphogenesis1.81E-02
142GO:0009934: regulation of meristem structural organization1.81E-02
143GO:0042546: cell wall biogenesis1.88E-02
144GO:0009644: response to high light intensity1.95E-02
145GO:0010030: positive regulation of seed germination1.96E-02
146GO:0010167: response to nitrate1.96E-02
147GO:0009664: plant-type cell wall organization2.27E-02
148GO:0000027: ribosomal large subunit assembly2.29E-02
149GO:0009736: cytokinin-activated signaling pathway2.44E-02
150GO:0006418: tRNA aminoacylation for protein translation2.45E-02
151GO:0009768: photosynthesis, light harvesting in photosystem I2.45E-02
152GO:0007017: microtubule-based process2.45E-02
153GO:0048511: rhythmic process2.62E-02
154GO:0009814: defense response, incompatible interaction2.80E-02
155GO:0016226: iron-sulfur cluster assembly2.80E-02
156GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.98E-02
157GO:0009723: response to ethylene2.98E-02
158GO:0009626: plant-type hypersensitive response3.07E-02
159GO:0006284: base-excision repair3.16E-02
160GO:0019722: calcium-mediated signaling3.16E-02
161GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.34E-02
162GO:0042545: cell wall modification3.37E-02
163GO:0042391: regulation of membrane potential3.54E-02
164GO:0000413: protein peptidyl-prolyl isomerization3.54E-02
165GO:0010087: phloem or xylem histogenesis3.54E-02
166GO:0048653: anther development3.54E-02
167GO:0042631: cellular response to water deprivation3.54E-02
168GO:0000271: polysaccharide biosynthetic process3.54E-02
169GO:0009742: brassinosteroid mediated signaling pathway3.68E-02
170GO:0010197: polar nucleus fusion3.73E-02
171GO:0010182: sugar mediated signaling pathway3.73E-02
172GO:0045489: pectin biosynthetic process3.73E-02
173GO:0042752: regulation of circadian rhythm3.93E-02
174GO:0009791: post-embryonic development4.13E-02
175GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.33E-02
176GO:0071554: cell wall organization or biogenesis4.33E-02
177GO:0002229: defense response to oomycetes4.33E-02
178GO:0006468: protein phosphorylation4.39E-02
179GO:0048235: pollen sperm cell differentiation4.54E-02
180GO:0006869: lipid transport4.54E-02
181GO:0030163: protein catabolic process4.75E-02
182GO:0071281: cellular response to iron ion4.75E-02
183GO:0042744: hydrogen peroxide catabolic process4.92E-02
184GO:0009828: plant-type cell wall loosening4.96E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
3GO:0050614: delta24-sterol reductase activity0.00E+00
4GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
8GO:0008987: quinolinate synthetase A activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0010301: xanthoxin dehydrogenase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0019843: rRNA binding1.06E-13
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.84E-06
16GO:0015250: water channel activity1.05E-05
17GO:0005528: FK506 binding1.17E-05
18GO:0016851: magnesium chelatase activity5.99E-05
19GO:0003735: structural constituent of ribosome1.41E-04
20GO:0004130: cytochrome-c peroxidase activity2.32E-04
21GO:0051920: peroxiredoxin activity3.12E-04
22GO:0030570: pectate lyase activity3.76E-04
23GO:0004328: formamidase activity4.23E-04
24GO:0005221: intracellular cyclic nucleotide activated cation channel activity4.23E-04
25GO:0000248: C-5 sterol desaturase activity4.23E-04
26GO:0000170: sphingosine hydroxylase activity4.23E-04
27GO:0046906: tetrapyrrole binding4.23E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.23E-04
29GO:0080132: fatty acid alpha-hydroxylase activity4.23E-04
30GO:0015200: methylammonium transmembrane transporter activity4.23E-04
31GO:0004853: uroporphyrinogen decarboxylase activity4.23E-04
32GO:0016209: antioxidant activity5.03E-04
33GO:0003839: gamma-glutamylcyclotransferase activity9.16E-04
34GO:0004617: phosphoglycerate dehydrogenase activity9.16E-04
35GO:0003938: IMP dehydrogenase activity9.16E-04
36GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.16E-04
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.16E-04
38GO:0042284: sphingolipid delta-4 desaturase activity9.16E-04
39GO:0004805: trehalose-phosphatase activity1.01E-03
40GO:0017150: tRNA dihydrouridine synthase activity1.49E-03
41GO:0002161: aminoacyl-tRNA editing activity1.49E-03
42GO:0004022: alcohol dehydrogenase (NAD) activity1.51E-03
43GO:0001872: (1->3)-beta-D-glucan binding2.15E-03
44GO:0035250: UDP-galactosyltransferase activity2.15E-03
45GO:0016149: translation release factor activity, codon specific2.15E-03
46GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.15E-03
47GO:0016829: lyase activity2.20E-03
48GO:0003993: acid phosphatase activity2.37E-03
49GO:0046556: alpha-L-arabinofuranosidase activity2.89E-03
50GO:0015204: urea transmembrane transporter activity2.89E-03
51GO:0001053: plastid sigma factor activity2.89E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity2.89E-03
53GO:0016836: hydro-lyase activity2.89E-03
54GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.89E-03
55GO:0016987: sigma factor activity2.89E-03
56GO:0009044: xylan 1,4-beta-xylosidase activity2.89E-03
57GO:0016491: oxidoreductase activity3.23E-03
58GO:0051537: 2 iron, 2 sulfur cluster binding3.42E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity3.71E-03
60GO:0009922: fatty acid elongase activity3.71E-03
61GO:0003959: NADPH dehydrogenase activity3.71E-03
62GO:0008200: ion channel inhibitor activity4.59E-03
63GO:0008519: ammonium transmembrane transporter activity4.59E-03
64GO:1990714: hydroxyproline O-galactosyltransferase activity4.59E-03
65GO:0016208: AMP binding4.59E-03
66GO:0016688: L-ascorbate peroxidase activity4.59E-03
67GO:0035673: oligopeptide transmembrane transporter activity4.59E-03
68GO:0004559: alpha-mannosidase activity5.53E-03
69GO:0005242: inward rectifier potassium channel activity5.53E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.53E-03
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.53E-03
72GO:0005261: cation channel activity5.53E-03
73GO:0016762: xyloglucan:xyloglucosyl transferase activity5.80E-03
74GO:0048038: quinone binding5.80E-03
75GO:0019899: enzyme binding6.54E-03
76GO:0000156: phosphorelay response regulator activity6.61E-03
77GO:0016722: oxidoreductase activity, oxidizing metal ions7.48E-03
78GO:0004033: aldo-keto reductase (NADP) activity7.60E-03
79GO:0016597: amino acid binding7.94E-03
80GO:0016168: chlorophyll binding8.89E-03
81GO:0016758: transferase activity, transferring hexosyl groups9.16E-03
82GO:0003747: translation release factor activity9.92E-03
83GO:0016798: hydrolase activity, acting on glycosyl bonds9.92E-03
84GO:0004337: geranyltranstransferase activity9.92E-03
85GO:0052689: carboxylic ester hydrolase activity1.00E-02
86GO:0005381: iron ion transmembrane transporter activity1.12E-02
87GO:0005096: GTPase activator activity1.16E-02
88GO:0008047: enzyme activator activity1.24E-02
89GO:0004161: dimethylallyltranstransferase activity1.38E-02
90GO:0015198: oligopeptide transporter activity1.52E-02
91GO:0008378: galactosyltransferase activity1.52E-02
92GO:0000049: tRNA binding1.52E-02
93GO:0004089: carbonate dehydratase activity1.66E-02
94GO:0005262: calcium channel activity1.66E-02
95GO:0004565: beta-galactosidase activity1.66E-02
96GO:0008266: poly(U) RNA binding1.81E-02
97GO:0003774: motor activity1.81E-02
98GO:0030552: cAMP binding1.96E-02
99GO:0030553: cGMP binding1.96E-02
100GO:0015293: symporter activity2.03E-02
101GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.12E-02
102GO:0031409: pigment binding2.12E-02
103GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.12E-02
104GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.12E-02
105GO:0051287: NAD binding2.19E-02
106GO:0005216: ion channel activity2.45E-02
107GO:0015079: potassium ion transmembrane transporter activity2.45E-02
108GO:0004601: peroxidase activity2.48E-02
109GO:0016788: hydrolase activity, acting on ester bonds2.54E-02
110GO:0008289: lipid binding2.54E-02
111GO:0033612: receptor serine/threonine kinase binding2.62E-02
112GO:0045330: aspartyl esterase activity2.70E-02
113GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.80E-02
114GO:0004672: protein kinase activity2.94E-02
115GO:0022891: substrate-specific transmembrane transporter activity2.98E-02
116GO:0004674: protein serine/threonine kinase activity3.05E-02
117GO:0008514: organic anion transmembrane transporter activity3.16E-02
118GO:0004650: polygalacturonase activity3.17E-02
119GO:0030599: pectinesterase activity3.27E-02
120GO:0004812: aminoacyl-tRNA ligase activity3.34E-02
121GO:0030551: cyclic nucleotide binding3.54E-02
122GO:0008080: N-acetyltransferase activity3.73E-02
123GO:0050662: coenzyme binding3.93E-02
124GO:0019901: protein kinase binding4.13E-02
125GO:0004871: signal transducer activity4.30E-02
126GO:0003824: catalytic activity4.50E-02
127GO:0004722: protein serine/threonine phosphatase activity4.54E-02
128GO:0005215: transporter activity4.55E-02
129GO:0004252: serine-type endopeptidase activity4.80E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009507: chloroplast6.90E-20
3GO:0009534: chloroplast thylakoid2.33E-15
4GO:0009570: chloroplast stroma8.50E-15
5GO:0009941: chloroplast envelope5.66E-14
6GO:0009543: chloroplast thylakoid lumen6.38E-11
7GO:0009505: plant-type cell wall1.82E-10
8GO:0009535: chloroplast thylakoid membrane2.36E-09
9GO:0010007: magnesium chelatase complex2.76E-05
10GO:0046658: anchored component of plasma membrane3.76E-05
11GO:0031977: thylakoid lumen5.35E-05
12GO:0031225: anchored component of membrane6.49E-05
13GO:0005618: cell wall6.81E-05
14GO:0016020: membrane8.47E-05
15GO:0005576: extracellular region1.17E-04
16GO:0048046: apoplast1.48E-04
17GO:0005840: ribosome1.86E-04
18GO:0009533: chloroplast stromal thylakoid4.03E-04
19GO:0042807: central vacuole4.03E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]4.23E-04
21GO:0009782: photosystem I antenna complex4.23E-04
22GO:0043674: columella4.23E-04
23GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.23E-04
24GO:0009579: thylakoid4.69E-04
25GO:0005887: integral component of plasma membrane5.88E-04
26GO:0005886: plasma membrane7.34E-04
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.36E-04
28GO:0009506: plasmodesma7.79E-04
29GO:0000312: plastid small ribosomal subunit1.70E-03
30GO:0009531: secondary cell wall2.15E-03
31GO:0009654: photosystem II oxygen evolving complex2.60E-03
32GO:0005773: vacuole3.45E-03
33GO:0009523: photosystem II5.42E-03
34GO:0019898: extrinsic component of membrane5.42E-03
35GO:0000326: protein storage vacuole8.73E-03
36GO:0010287: plastoglobule8.84E-03
37GO:0045298: tubulin complex9.92E-03
38GO:0016459: myosin complex1.24E-02
39GO:0015934: large ribosomal subunit1.27E-02
40GO:0009705: plant-type vacuole membrane1.43E-02
41GO:0000311: plastid large ribosomal subunit1.52E-02
42GO:0032040: small-subunit processome1.52E-02
43GO:0030095: chloroplast photosystem II1.81E-02
44GO:0030076: light-harvesting complex1.96E-02
45GO:0009536: plastid2.10E-02
46GO:0031969: chloroplast membrane3.25E-02
47GO:0022625: cytosolic large ribosomal subunit3.46E-02
48GO:0009706: chloroplast inner membrane3.47E-02
49GO:0009522: photosystem I3.93E-02
50GO:0071944: cell periphery4.75E-02
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Gene type



Gene DE type