Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G44750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046292: formaldehyde metabolic process0.00E+00
2GO:0080053: response to phenylalanine0.00E+00
3GO:0045747: positive regulation of Notch signaling pathway0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0006983: ER overload response0.00E+00
6GO:0080052: response to histidine0.00E+00
7GO:0006069: ethanol oxidation0.00E+00
8GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
9GO:0010398: xylogalacturonan metabolic process0.00E+00
10GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
11GO:0001881: receptor recycling0.00E+00
12GO:0006592: ornithine biosynthetic process0.00E+00
13GO:0032780: negative regulation of ATPase activity0.00E+00
14GO:0006101: citrate metabolic process2.32E-06
15GO:0006102: isocitrate metabolic process3.74E-06
16GO:0046686: response to cadmium ion3.94E-06
17GO:0006099: tricarboxylic acid cycle4.00E-06
18GO:0055114: oxidation-reduction process6.33E-06
19GO:0010150: leaf senescence1.07E-05
20GO:0043069: negative regulation of programmed cell death1.37E-05
21GO:0001676: long-chain fatty acid metabolic process1.93E-05
22GO:0006564: L-serine biosynthetic process5.65E-05
23GO:0006097: glyoxylate cycle5.65E-05
24GO:0006014: D-ribose metabolic process8.30E-05
25GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly8.30E-05
26GO:1990641: response to iron ion starvation2.22E-04
27GO:0080173: male-female gamete recognition during double fertilization2.22E-04
28GO:0035266: meristem growth2.22E-04
29GO:0007292: female gamete generation2.22E-04
30GO:0006805: xenobiotic metabolic process2.22E-04
31GO:0019521: D-gluconate metabolic process4.95E-04
32GO:0043066: negative regulation of apoptotic process4.95E-04
33GO:0042939: tripeptide transport4.95E-04
34GO:1902000: homogentisate catabolic process4.95E-04
35GO:0051788: response to misfolded protein4.95E-04
36GO:0008535: respiratory chain complex IV assembly4.95E-04
37GO:0019441: tryptophan catabolic process to kynurenine4.95E-04
38GO:0097054: L-glutamate biosynthetic process4.95E-04
39GO:0006597: spermine biosynthetic process4.95E-04
40GO:1905182: positive regulation of urease activity4.95E-04
41GO:0051262: protein tetramerization4.95E-04
42GO:0045454: cell redox homeostasis5.60E-04
43GO:0006499: N-terminal protein myristoylation5.75E-04
44GO:0009407: toxin catabolic process5.75E-04
45GO:0010043: response to zinc ion6.11E-04
46GO:0090351: seedling development7.67E-04
47GO:1900055: regulation of leaf senescence8.05E-04
48GO:0010359: regulation of anion channel activity8.05E-04
49GO:0008333: endosome to lysosome transport8.05E-04
50GO:0051176: positive regulation of sulfur metabolic process8.05E-04
51GO:0009432: SOS response8.05E-04
52GO:0009072: aromatic amino acid family metabolic process8.05E-04
53GO:0060968: regulation of gene silencing8.05E-04
54GO:0000162: tryptophan biosynthetic process8.53E-04
55GO:2000377: regulation of reactive oxygen species metabolic process9.41E-04
56GO:0006537: glutamate biosynthetic process1.15E-03
57GO:0072334: UDP-galactose transmembrane transport1.15E-03
58GO:0009399: nitrogen fixation1.15E-03
59GO:0071786: endoplasmic reticulum tubular network organization1.15E-03
60GO:0006624: vacuolar protein processing1.15E-03
61GO:0000730: DNA recombinase assembly1.15E-03
62GO:0007231: osmosensory signaling pathway1.15E-03
63GO:2001289: lipid X metabolic process1.15E-03
64GO:0030433: ubiquitin-dependent ERAD pathway1.24E-03
65GO:0009809: lignin biosynthetic process1.36E-03
66GO:0051603: proteolysis involved in cellular protein catabolic process1.42E-03
67GO:0033500: carbohydrate homeostasis1.53E-03
68GO:1902584: positive regulation of response to water deprivation1.53E-03
69GO:0010363: regulation of plant-type hypersensitive response1.53E-03
70GO:0006221: pyrimidine nucleotide biosynthetic process1.53E-03
71GO:0010188: response to microbial phytotoxin1.53E-03
72GO:0042938: dipeptide transport1.53E-03
73GO:0006542: glutamine biosynthetic process1.53E-03
74GO:0019676: ammonia assimilation cycle1.53E-03
75GO:0006662: glycerol ether metabolic process1.84E-03
76GO:0009697: salicylic acid biosynthetic process1.95E-03
77GO:0030308: negative regulation of cell growth1.95E-03
78GO:0006090: pyruvate metabolic process1.95E-03
79GO:0045927: positive regulation of growth1.95E-03
80GO:0019252: starch biosynthetic process2.12E-03
81GO:0042742: defense response to bacterium2.19E-03
82GO:0006979: response to oxidative stress2.22E-03
83GO:0010193: response to ozone2.26E-03
84GO:1902456: regulation of stomatal opening2.40E-03
85GO:0006596: polyamine biosynthetic process2.40E-03
86GO:0035435: phosphate ion transmembrane transport2.40E-03
87GO:0002238: response to molecule of fungal origin2.40E-03
88GO:0006751: glutathione catabolic process2.40E-03
89GO:0048827: phyllome development2.40E-03
90GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.40E-03
91GO:0048232: male gamete generation2.40E-03
92GO:0043248: proteasome assembly2.40E-03
93GO:0009612: response to mechanical stimulus2.89E-03
94GO:0009082: branched-chain amino acid biosynthetic process2.89E-03
95GO:0006694: steroid biosynthetic process2.89E-03
96GO:0098655: cation transmembrane transport2.89E-03
97GO:0034389: lipid particle organization2.89E-03
98GO:0009099: valine biosynthetic process2.89E-03
99GO:0015977: carbon fixation2.89E-03
100GO:0042148: strand invasion3.40E-03
101GO:0080186: developmental vegetative growth3.40E-03
102GO:0071669: plant-type cell wall organization or biogenesis3.40E-03
103GO:0050790: regulation of catalytic activity3.40E-03
104GO:0043090: amino acid import3.40E-03
105GO:0009751: response to salicylic acid3.59E-03
106GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.94E-03
107GO:0009819: drought recovery3.94E-03
108GO:0010078: maintenance of root meristem identity3.94E-03
109GO:0016559: peroxisome fission3.94E-03
110GO:0010212: response to ionizing radiation4.51E-03
111GO:0009097: isoleucine biosynthetic process4.51E-03
112GO:0006526: arginine biosynthetic process4.51E-03
113GO:0006002: fructose 6-phosphate metabolic process4.51E-03
114GO:0009821: alkaloid biosynthetic process5.11E-03
115GO:0009051: pentose-phosphate shunt, oxidative branch5.11E-03
116GO:0006098: pentose-phosphate shunt5.11E-03
117GO:0045087: innate immune response5.38E-03
118GO:0034599: cellular response to oxidative stress5.62E-03
119GO:0009098: leucine biosynthetic process5.74E-03
120GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.74E-03
121GO:0071577: zinc II ion transmembrane transport5.74E-03
122GO:0000103: sulfate assimilation6.38E-03
123GO:0048829: root cap development6.38E-03
124GO:0006631: fatty acid metabolic process6.39E-03
125GO:0006508: proteolysis7.05E-03
126GO:0072593: reactive oxygen species metabolic process7.06E-03
127GO:0043085: positive regulation of catalytic activity7.06E-03
128GO:0010015: root morphogenesis7.06E-03
129GO:0000038: very long-chain fatty acid metabolic process7.06E-03
130GO:0000266: mitochondrial fission7.76E-03
131GO:0006312: mitotic recombination7.76E-03
132GO:0009636: response to toxic substance7.80E-03
133GO:0006108: malate metabolic process8.48E-03
134GO:0006807: nitrogen compound metabolic process8.48E-03
135GO:0009651: response to salt stress8.52E-03
136GO:0009723: response to ethylene8.94E-03
137GO:0009611: response to wounding9.06E-03
138GO:0007034: vacuolar transport9.23E-03
139GO:0009933: meristem structural organization9.23E-03
140GO:0010053: root epidermal cell differentiation1.00E-02
141GO:0034976: response to endoplasmic reticulum stress1.08E-02
142GO:0006071: glycerol metabolic process1.08E-02
143GO:0006096: glycolytic process1.11E-02
144GO:0006487: protein N-linked glycosylation1.16E-02
145GO:0051260: protein homooligomerization1.33E-02
146GO:0016226: iron-sulfur cluster assembly1.42E-02
147GO:0007005: mitochondrion organization1.42E-02
148GO:0031348: negative regulation of defense response1.42E-02
149GO:0009625: response to insect1.51E-02
150GO:0006012: galactose metabolic process1.51E-02
151GO:0009408: response to heat1.60E-02
152GO:0042147: retrograde transport, endosome to Golgi1.70E-02
153GO:0009753: response to jasmonic acid1.75E-02
154GO:0042631: cellular response to water deprivation1.79E-02
155GO:0045489: pectin biosynthetic process1.89E-02
156GO:0009646: response to absence of light1.99E-02
157GO:0006623: protein targeting to vacuole2.09E-02
158GO:0000302: response to reactive oxygen species2.19E-02
159GO:0006635: fatty acid beta-oxidation2.19E-02
160GO:0007264: small GTPase mediated signal transduction2.30E-02
161GO:0006310: DNA recombination2.52E-02
162GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.59E-02
163GO:0010286: heat acclimation2.63E-02
164GO:0009615: response to virus2.85E-02
165GO:0006974: cellular response to DNA damage stimulus3.09E-02
166GO:0042128: nitrate assimilation3.09E-02
167GO:0006950: response to stress3.20E-02
168GO:0008219: cell death3.45E-02
169GO:0010311: lateral root formation3.57E-02
170GO:0010119: regulation of stomatal movement3.82E-02
171GO:0006865: amino acid transport3.95E-02
172GO:0016051: carbohydrate biosynthetic process4.08E-02
173GO:0016192: vesicle-mediated transport4.65E-02
174GO:0042542: response to hydrogen peroxide4.74E-02
175GO:0006511: ubiquitin-dependent protein catabolic process4.79E-02
176GO:0009926: auxin polar transport4.88E-02
RankGO TermAdjusted P value
1GO:0051670: inulinase activity0.00E+00
2GO:0004622: lysophospholipase activity0.00E+00
3GO:0015930: glutamate synthase activity0.00E+00
4GO:0070577: lysine-acetylated histone binding0.00E+00
5GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
6GO:0003846: 2-acylglycerol O-acyltransferase activity0.00E+00
7GO:0008777: acetylornithine deacetylase activity0.00E+00
8GO:0042030: ATPase inhibitor activity0.00E+00
9GO:0016504: peptidase activator activity0.00E+00
10GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
11GO:0016034: maleylacetoacetate isomerase activity0.00E+00
12GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
13GO:0003994: aconitate hydratase activity2.32E-06
14GO:0005496: steroid binding5.65E-05
15GO:0036402: proteasome-activating ATPase activity8.30E-05
16GO:0004364: glutathione transferase activity9.93E-05
17GO:0102391: decanoate--CoA ligase activity1.15E-04
18GO:0004747: ribokinase activity1.15E-04
19GO:0008320: protein transmembrane transporter activity1.52E-04
20GO:0004467: long-chain fatty acid-CoA ligase activity1.52E-04
21GO:0052747: sinapyl alcohol dehydrogenase activity1.94E-04
22GO:0008865: fructokinase activity1.94E-04
23GO:0004112: cyclic-nucleotide phosphodiesterase activity2.22E-04
24GO:0051669: fructan beta-fructosidase activity2.22E-04
25GO:0004048: anthranilate phosphoribosyltransferase activity2.22E-04
26GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.22E-04
27GO:0019707: protein-cysteine S-acyltransferase activity2.22E-04
28GO:0031219: levanase activity2.22E-04
29GO:0016768: spermine synthase activity2.22E-04
30GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.22E-04
31GO:0016041: glutamate synthase (ferredoxin) activity2.22E-04
32GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity2.22E-04
33GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity2.22E-04
34GO:0004425: indole-3-glycerol-phosphate synthase activity2.22E-04
35GO:0005507: copper ion binding2.71E-04
36GO:0004061: arylformamidase activity4.95E-04
37GO:0019172: glyoxalase III activity4.95E-04
38GO:0015036: disulfide oxidoreductase activity4.95E-04
39GO:0004775: succinate-CoA ligase (ADP-forming) activity4.95E-04
40GO:0042937: tripeptide transporter activity4.95E-04
41GO:0004776: succinate-CoA ligase (GDP-forming) activity4.95E-04
42GO:0004566: beta-glucuronidase activity4.95E-04
43GO:0004617: phosphoglycerate dehydrogenase activity4.95E-04
44GO:0004766: spermidine synthase activity4.95E-04
45GO:0045551: cinnamyl-alcohol dehydrogenase activity5.37E-04
46GO:0004022: alcohol dehydrogenase (NAD) activity6.09E-04
47GO:0005215: transporter activity7.65E-04
48GO:0017025: TBP-class protein binding7.67E-04
49GO:0016174: NAD(P)H oxidase activity8.05E-04
50GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity8.05E-04
51GO:0003840: gamma-glutamyltransferase activity8.05E-04
52GO:0036374: glutathione hydrolase activity8.05E-04
53GO:0004557: alpha-galactosidase activity8.05E-04
54GO:0008964: phosphoenolpyruvate carboxylase activity8.05E-04
55GO:0016805: dipeptidase activity8.05E-04
56GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity8.05E-04
57GO:0052692: raffinose alpha-galactosidase activity8.05E-04
58GO:0016151: nickel cation binding8.05E-04
59GO:0008430: selenium binding8.05E-04
60GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.15E-03
61GO:0004449: isocitrate dehydrogenase (NAD+) activity1.15E-03
62GO:0052656: L-isoleucine transaminase activity1.15E-03
63GO:0052654: L-leucine transaminase activity1.15E-03
64GO:0004300: enoyl-CoA hydratase activity1.15E-03
65GO:0052655: L-valine transaminase activity1.15E-03
66GO:0070628: proteasome binding1.53E-03
67GO:0004470: malic enzyme activity1.53E-03
68GO:0004084: branched-chain-amino-acid transaminase activity1.53E-03
69GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor1.53E-03
70GO:0042936: dipeptide transporter activity1.53E-03
71GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity1.53E-03
72GO:0047134: protein-disulfide reductase activity1.58E-03
73GO:0005459: UDP-galactose transmembrane transporter activity1.95E-03
74GO:0008948: oxaloacetate decarboxylase activity1.95E-03
75GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.95E-03
76GO:0051538: 3 iron, 4 sulfur cluster binding1.95E-03
77GO:0004356: glutamate-ammonia ligase activity1.95E-03
78GO:0004791: thioredoxin-disulfide reductase activity1.97E-03
79GO:0016853: isomerase activity1.97E-03
80GO:0015035: protein disulfide oxidoreductase activity2.21E-03
81GO:0031593: polyubiquitin binding2.40E-03
82GO:0035252: UDP-xylosyltransferase activity2.40E-03
83GO:0004197: cysteine-type endopeptidase activity2.42E-03
84GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.57E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.89E-03
86GO:0004602: glutathione peroxidase activity2.89E-03
87GO:0004656: procollagen-proline 4-dioxygenase activity2.89E-03
88GO:0003872: 6-phosphofructokinase activity3.40E-03
89GO:0043295: glutathione binding3.40E-03
90GO:0000150: recombinase activity3.40E-03
91GO:0008235: metalloexopeptidase activity3.40E-03
92GO:0005524: ATP binding3.52E-03
93GO:0016491: oxidoreductase activity3.76E-03
94GO:0000400: four-way junction DNA binding3.94E-03
95GO:0004034: aldose 1-epimerase activity3.94E-03
96GO:0004520: endodeoxyribonuclease activity3.94E-03
97GO:0008889: glycerophosphodiester phosphodiesterase activity5.11E-03
98GO:0071949: FAD binding5.11E-03
99GO:0030955: potassium ion binding5.74E-03
100GO:0016844: strictosidine synthase activity5.74E-03
101GO:0004743: pyruvate kinase activity5.74E-03
102GO:0051539: 4 iron, 4 sulfur cluster binding6.13E-03
103GO:0008047: enzyme activator activity6.38E-03
104GO:0008794: arsenate reductase (glutaredoxin) activity7.06E-03
105GO:0004177: aminopeptidase activity7.06E-03
106GO:0016887: ATPase activity7.13E-03
107GO:0051287: NAD binding8.40E-03
108GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.48E-03
109GO:0005315: inorganic phosphate transmembrane transporter activity8.48E-03
110GO:0004175: endopeptidase activity9.23E-03
111GO:0008131: primary amine oxidase activity9.23E-03
112GO:0016298: lipase activity9.69E-03
113GO:0008234: cysteine-type peptidase activity1.04E-02
114GO:0031418: L-ascorbic acid binding1.16E-02
115GO:0005385: zinc ion transmembrane transporter activity1.16E-02
116GO:0008324: cation transmembrane transporter activity1.24E-02
117GO:0008094: DNA-dependent ATPase activity1.33E-02
118GO:0004298: threonine-type endopeptidase activity1.33E-02
119GO:0019706: protein-cysteine S-palmitoyltransferase activity1.33E-02
120GO:0003756: protein disulfide isomerase activity1.60E-02
121GO:0046873: metal ion transmembrane transporter activity1.89E-02
122GO:0048038: quinone binding2.19E-02
123GO:0005509: calcium ion binding2.24E-02
124GO:0008483: transaminase activity2.63E-02
125GO:0008237: metallopeptidase activity2.63E-02
126GO:0016597: amino acid binding2.74E-02
127GO:0009931: calcium-dependent protein serine/threonine kinase activity3.09E-02
128GO:0004683: calmodulin-dependent protein kinase activity3.20E-02
129GO:0000287: magnesium ion binding3.51E-02
130GO:0015238: drug transmembrane transporter activity3.57E-02
131GO:0004601: peroxidase activity3.58E-02
132GO:0016788: hydrolase activity, acting on ester bonds3.65E-02
133GO:0030145: manganese ion binding3.82E-02
134GO:0003697: single-stranded DNA binding4.08E-02
135GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.08E-02
136GO:0004712: protein serine/threonine/tyrosine kinase activity4.34E-02
137GO:0004497: monooxygenase activity4.42E-02
138GO:0052689: carboxylic ester hydrolase activity4.88E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005829: cytosol2.67E-09
3GO:0005783: endoplasmic reticulum1.67E-06
4GO:0005777: peroxisome2.61E-05
5GO:0005773: vacuole3.93E-05
6GO:0005886: plasma membrane5.71E-05
7GO:0005794: Golgi apparatus9.03E-05
8GO:0031597: cytosolic proteasome complex1.15E-04
9GO:0031595: nuclear proteasome complex1.52E-04
10GO:0005618: cell wall1.77E-04
11GO:0000138: Golgi trans cisterna2.22E-04
12GO:0009570: chloroplast stroma3.13E-04
13GO:0008540: proteasome regulatory particle, base subcomplex3.46E-04
14GO:0005789: endoplasmic reticulum membrane4.60E-04
15GO:0031314: extrinsic component of mitochondrial inner membrane4.95E-04
16GO:0030134: ER to Golgi transport vesicle4.95E-04
17GO:0046861: glyoxysomal membrane8.05E-04
18GO:0005839: proteasome core complex1.13E-03
19GO:0000323: lytic vacuole1.15E-03
20GO:0071782: endoplasmic reticulum tubular network1.15E-03
21GO:0000502: proteasome complex1.36E-03
22GO:0005945: 6-phosphofructokinase complex1.95E-03
23GO:0008250: oligosaccharyltransferase complex1.95E-03
24GO:0005771: multivesicular body2.40E-03
25GO:0030904: retromer complex2.40E-03
26GO:0005801: cis-Golgi network2.89E-03
27GO:0030173: integral component of Golgi membrane2.89E-03
28GO:0005778: peroxisomal membrane2.91E-03
29GO:0005774: vacuolar membrane3.27E-03
30GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.40E-03
31GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane3.94E-03
32GO:0005811: lipid particle4.51E-03
33GO:0009514: glyoxysome4.51E-03
34GO:0005737: cytoplasm6.20E-03
35GO:0005765: lysosomal membrane7.06E-03
36GO:0016020: membrane7.67E-03
37GO:0005764: lysosome9.23E-03
38GO:0030176: integral component of endoplasmic reticulum membrane1.00E-02
39GO:0048046: apoplast1.01E-02
40GO:0005769: early endosome1.08E-02
41GO:0005741: mitochondrial outer membrane1.33E-02
42GO:0032580: Golgi cisterna membrane2.52E-02
43GO:0005788: endoplasmic reticulum lumen2.97E-02
44GO:0016021: integral component of membrane2.97E-02
45GO:0009507: chloroplast2.99E-02
46GO:0009536: plastid3.40E-02
47GO:0009505: plant-type cell wall3.51E-02
48GO:0031902: late endosome membrane4.61E-02
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Gene type



Gene DE type