GO Enrichment Analysis of Co-expressed Genes with
AT2G44640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0042407: cristae formation | 0.00E+00 |
| 3 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 4 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 5 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 6 | GO:0042026: protein refolding | 1.28E-08 |
| 7 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.36E-07 |
| 8 | GO:0007005: mitochondrion organization | 1.14E-06 |
| 9 | GO:1901259: chloroplast rRNA processing | 4.83E-06 |
| 10 | GO:0006458: 'de novo' protein folding | 4.83E-06 |
| 11 | GO:0015995: chlorophyll biosynthetic process | 8.77E-06 |
| 12 | GO:0009657: plastid organization | 1.17E-05 |
| 13 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.84E-05 |
| 14 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.24E-05 |
| 15 | GO:0006436: tryptophanyl-tRNA aminoacylation | 3.12E-05 |
| 16 | GO:0010028: xanthophyll cycle | 3.12E-05 |
| 17 | GO:0006418: tRNA aminoacylation for protein translation | 7.08E-05 |
| 18 | GO:0006423: cysteinyl-tRNA aminoacylation | 7.88E-05 |
| 19 | GO:2000071: regulation of defense response by callose deposition | 7.88E-05 |
| 20 | GO:0061077: chaperone-mediated protein folding | 7.90E-05 |
| 21 | GO:0006986: response to unfolded protein | 2.04E-04 |
| 22 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 2.04E-04 |
| 23 | GO:0006457: protein folding | 2.25E-04 |
| 24 | GO:0006796: phosphate-containing compound metabolic process | 4.34E-04 |
| 25 | GO:0042793: transcription from plastid promoter | 4.34E-04 |
| 26 | GO:0017148: negative regulation of translation | 5.20E-04 |
| 27 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 6.99E-04 |
| 28 | GO:0098656: anion transmembrane transport | 8.92E-04 |
| 29 | GO:0006783: heme biosynthetic process | 8.92E-04 |
| 30 | GO:0043067: regulation of programmed cell death | 9.92E-04 |
| 31 | GO:1900865: chloroplast RNA modification | 9.92E-04 |
| 32 | GO:0031425: chloroplast RNA processing | 9.92E-04 |
| 33 | GO:0045036: protein targeting to chloroplast | 1.10E-03 |
| 34 | GO:0009682: induced systemic resistance | 1.20E-03 |
| 35 | GO:0009691: cytokinin biosynthetic process | 1.43E-03 |
| 36 | GO:0009790: embryo development | 1.44E-03 |
| 37 | GO:0010020: chloroplast fission | 1.55E-03 |
| 38 | GO:0009793: embryo development ending in seed dormancy | 1.61E-03 |
| 39 | GO:0009451: RNA modification | 1.73E-03 |
| 40 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.32E-03 |
| 41 | GO:0042742: defense response to bacterium | 2.84E-03 |
| 42 | GO:0010118: stomatal movement | 2.90E-03 |
| 43 | GO:0008033: tRNA processing | 2.90E-03 |
| 44 | GO:0010501: RNA secondary structure unwinding | 2.90E-03 |
| 45 | GO:0006662: glycerol ether metabolic process | 3.05E-03 |
| 46 | GO:0010197: polar nucleus fusion | 3.05E-03 |
| 47 | GO:0002229: defense response to oomycetes | 3.51E-03 |
| 48 | GO:0015979: photosynthesis | 3.65E-03 |
| 49 | GO:0009627: systemic acquired resistance | 4.87E-03 |
| 50 | GO:0048481: plant ovule development | 5.42E-03 |
| 51 | GO:0008219: cell death | 5.42E-03 |
| 52 | GO:0009867: jasmonic acid mediated signaling pathway | 6.38E-03 |
| 53 | GO:0034599: cellular response to oxidative stress | 6.58E-03 |
| 54 | GO:0009735: response to cytokinin | 7.61E-03 |
| 55 | GO:0031347: regulation of defense response | 8.68E-03 |
| 56 | GO:0009620: response to fungus | 1.13E-02 |
| 57 | GO:0009624: response to nematode | 1.20E-02 |
| 58 | GO:0006633: fatty acid biosynthetic process | 1.65E-02 |
| 59 | GO:0009409: response to cold | 2.29E-02 |
| 60 | GO:0009658: chloroplast organization | 2.41E-02 |
| 61 | GO:0045454: cell redox homeostasis | 3.19E-02 |
| 62 | GO:0006397: mRNA processing | 3.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0051082: unfolded protein binding | 3.51E-08 |
| 4 | GO:0044183: protein binding involved in protein folding | 1.75E-07 |
| 5 | GO:0016851: magnesium chelatase activity | 6.36E-07 |
| 6 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 3.12E-05 |
| 7 | GO:0052381: tRNA dimethylallyltransferase activity | 3.12E-05 |
| 8 | GO:0004830: tryptophan-tRNA ligase activity | 3.12E-05 |
| 9 | GO:0051087: chaperone binding | 7.08E-05 |
| 10 | GO:0004312: fatty acid synthase activity | 7.88E-05 |
| 11 | GO:0004817: cysteine-tRNA ligase activity | 7.88E-05 |
| 12 | GO:0000774: adenyl-nucleotide exchange factor activity | 7.88E-05 |
| 13 | GO:0004812: aminoacyl-tRNA ligase activity | 1.16E-04 |
| 14 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 1.37E-04 |
| 15 | GO:0070180: large ribosomal subunit rRNA binding | 1.37E-04 |
| 16 | GO:0043023: ribosomal large subunit binding | 2.04E-04 |
| 17 | GO:0016462: pyrophosphatase activity | 4.34E-04 |
| 18 | GO:0004427: inorganic diphosphatase activity | 6.07E-04 |
| 19 | GO:0016887: ATPase activity | 9.92E-04 |
| 20 | GO:0000049: tRNA binding | 1.31E-03 |
| 21 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.43E-03 |
| 22 | GO:0003723: RNA binding | 2.57E-03 |
| 23 | GO:0008514: organic anion transmembrane transporter activity | 2.61E-03 |
| 24 | GO:0047134: protein-disulfide reductase activity | 2.75E-03 |
| 25 | GO:0004791: thioredoxin-disulfide reductase activity | 3.20E-03 |
| 26 | GO:0005524: ATP binding | 3.50E-03 |
| 27 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.84E-03 |
| 28 | GO:0042803: protein homodimerization activity | 4.00E-03 |
| 29 | GO:0008483: transaminase activity | 4.17E-03 |
| 30 | GO:0004004: ATP-dependent RNA helicase activity | 5.05E-03 |
| 31 | GO:0004519: endonuclease activity | 5.11E-03 |
| 32 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.42E-03 |
| 33 | GO:0003746: translation elongation factor activity | 6.38E-03 |
| 34 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.08E-02 |
| 35 | GO:0015035: protein disulfide oxidoreductase activity | 1.22E-02 |
| 36 | GO:0008026: ATP-dependent helicase activity | 1.25E-02 |
| 37 | GO:0005525: GTP binding | 1.37E-02 |
| 38 | GO:0030170: pyridoxal phosphate binding | 1.51E-02 |
| 39 | GO:0042802: identical protein binding | 2.09E-02 |
| 40 | GO:0000287: magnesium ion binding | 2.38E-02 |
| 41 | GO:0004601: peroxidase activity | 2.41E-02 |
| 42 | GO:0003729: mRNA binding | 2.52E-02 |
| 43 | GO:0003924: GTPase activity | 3.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.57E-30 |
| 2 | GO:0009570: chloroplast stroma | 1.17E-21 |
| 3 | GO:0009941: chloroplast envelope | 3.13E-15 |
| 4 | GO:0009579: thylakoid | 8.12E-07 |
| 5 | GO:0010007: magnesium chelatase complex | 1.37E-04 |
| 6 | GO:0009295: nucleoid | 2.25E-04 |
| 7 | GO:0009536: plastid | 6.25E-04 |
| 8 | GO:0009539: photosystem II reaction center | 7.94E-04 |
| 9 | GO:0009706: chloroplast inner membrane | 1.00E-03 |
| 10 | GO:0022626: cytosolic ribosome | 1.11E-03 |
| 11 | GO:0009508: plastid chromosome | 1.43E-03 |
| 12 | GO:0005759: mitochondrial matrix | 1.54E-03 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 2.05E-03 |
| 14 | GO:0010319: stromule | 4.17E-03 |
| 15 | GO:0030529: intracellular ribonucleoprotein complex | 4.52E-03 |
| 16 | GO:0009707: chloroplast outer membrane | 5.42E-03 |
| 17 | GO:0005739: mitochondrion | 1.41E-02 |
| 18 | GO:0005623: cell | 1.43E-02 |
| 19 | GO:0048046: apoplast | 1.46E-02 |
| 20 | GO:0031969: chloroplast membrane | 2.81E-02 |
| 21 | GO:0005743: mitochondrial inner membrane | 3.52E-02 |