Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G43790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035278: miRNA mediated inhibition of translation0.00E+00
2GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
3GO:1903798: regulation of production of miRNAs involved in gene silencing by miRNA0.00E+00
4GO:0071902: positive regulation of protein serine/threonine kinase activity4.04E-05
5GO:0090421: embryonic meristem initiation4.04E-05
6GO:1903648: positive regulation of chlorophyll catabolic process4.04E-05
7GO:1900036: positive regulation of cellular response to heat4.04E-05
8GO:0008361: regulation of cell size4.67E-05
9GO:0035335: peptidyl-tyrosine dephosphorylation1.00E-04
10GO:0043631: RNA polyadenylation1.00E-04
11GO:0010506: regulation of autophagy1.73E-04
12GO:0071230: cellular response to amino acid stimulus1.73E-04
13GO:0031929: TOR signaling1.73E-04
14GO:0043044: ATP-dependent chromatin remodeling1.73E-04
15GO:2000034: regulation of seed maturation1.73E-04
16GO:0080119: ER body organization2.55E-04
17GO:0010188: response to microbial phytotoxin3.43E-04
18GO:0006085: acetyl-CoA biosynthetic process3.43E-04
19GO:0045723: positive regulation of fatty acid biosynthetic process3.43E-04
20GO:0016049: cell growth4.36E-04
21GO:0009697: salicylic acid biosynthetic process4.37E-04
22GO:0016558: protein import into peroxisome matrix4.37E-04
23GO:0007029: endoplasmic reticulum organization4.37E-04
24GO:0032876: negative regulation of DNA endoreduplication4.37E-04
25GO:0048232: male gamete generation5.37E-04
26GO:0009267: cellular response to starvation5.37E-04
27GO:0010199: organ boundary specification between lateral organs and the meristem6.40E-04
28GO:0010310: regulation of hydrogen peroxide metabolic process6.40E-04
29GO:1900057: positive regulation of leaf senescence7.49E-04
30GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.49E-04
31GO:0006333: chromatin assembly or disassembly7.49E-04
32GO:0030307: positive regulation of cell growth7.49E-04
33GO:0006368: transcription elongation from RNA polymerase II promoter7.49E-04
34GO:0010050: vegetative phase change7.49E-04
35GO:0040029: regulation of gene expression, epigenetic8.61E-04
36GO:0009642: response to light intensity8.61E-04
37GO:0006972: hyperosmotic response9.77E-04
38GO:0009880: embryonic pattern specification9.77E-04
39GO:0001708: cell fate specification1.10E-03
40GO:0010345: suberin biosynthetic process1.10E-03
41GO:0031627: telomeric loop formation1.35E-03
42GO:0010048: vernalization response1.35E-03
43GO:0006378: mRNA polyadenylation1.49E-03
44GO:0046856: phosphatidylinositol dephosphorylation1.49E-03
45GO:0010143: cutin biosynthetic process1.92E-03
46GO:0010030: positive regulation of seed germination2.07E-03
47GO:0007030: Golgi organization2.07E-03
48GO:0010025: wax biosynthetic process2.23E-03
49GO:0042023: DNA endoreduplication2.23E-03
50GO:0008299: isoprenoid biosynthetic process2.55E-03
51GO:0006470: protein dephosphorylation2.65E-03
52GO:0006366: transcription from RNA polymerase II promoter2.72E-03
53GO:0003333: amino acid transmembrane transport2.72E-03
54GO:0030433: ubiquitin-dependent ERAD pathway2.89E-03
55GO:0010091: trichome branching3.24E-03
56GO:0042335: cuticle development3.61E-03
57GO:0006635: fatty acid beta-oxidation4.38E-03
58GO:0010193: response to ozone4.38E-03
59GO:0009651: response to salt stress4.70E-03
60GO:0019760: glucosinolate metabolic process5.00E-03
61GO:0006950: response to stress6.31E-03
62GO:0006888: ER to Golgi vesicle-mediated transport6.31E-03
63GO:0009751: response to salicylic acid6.41E-03
64GO:0010224: response to UV-B1.20E-02
65GO:0009909: regulation of flower development1.26E-02
66GO:0006417: regulation of translation1.26E-02
67GO:0006096: glycolytic process1.32E-02
68GO:0016569: covalent chromatin modification1.45E-02
69GO:0006633: fatty acid biosynthetic process2.08E-02
70GO:0009414: response to water deprivation2.29E-02
71GO:0009739: response to gibberellin2.41E-02
72GO:0006970: response to osmotic stress3.20E-02
73GO:0009723: response to ethylene3.37E-02
74GO:0010200: response to chitin3.63E-02
75GO:0006886: intracellular protein transport4.11E-02
76GO:0006397: mRNA processing4.81E-02
77GO:0007165: signal transduction4.86E-02
78GO:0009753: response to jasmonic acid4.90E-02
79GO:0009737: response to abscisic acid4.97E-02
RankGO TermAdjusted P value
1GO:0008138: protein tyrosine/serine/threonine phosphatase activity2.21E-05
2GO:0008301: DNA binding, bending4.04E-05
3GO:0004725: protein tyrosine phosphatase activity8.11E-05
4GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding1.00E-04
5GO:0016314: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity1.00E-04
6GO:0004652: polynucleotide adenylyltransferase activity2.55E-04
7GO:0003878: ATP citrate synthase activity2.55E-04
8GO:0052866: phosphatidylinositol phosphate phosphatase activity2.55E-04
9GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway3.43E-04
10GO:0003682: chromatin binding4.38E-04
11GO:0004332: fructose-bisphosphate aldolase activity5.37E-04
12GO:0004712: protein serine/threonine/tyrosine kinase activity6.27E-04
13GO:0070300: phosphatidic acid binding6.40E-04
14GO:0042162: telomeric DNA binding7.49E-04
15GO:0030674: protein binding, bridging8.61E-04
16GO:0005515: protein binding1.11E-03
17GO:0031490: chromatin DNA binding1.22E-03
18GO:0015174: basic amino acid transmembrane transporter activity1.22E-03
19GO:0016874: ligase activity1.29E-03
20GO:0004386: helicase activity1.48E-03
21GO:0003691: double-stranded telomeric DNA binding1.49E-03
22GO:0000976: transcription regulatory region sequence-specific DNA binding1.63E-03
23GO:0008094: DNA-dependent ATPase activity2.72E-03
24GO:0016779: nucleotidyltransferase activity2.89E-03
25GO:0003713: transcription coactivator activity3.80E-03
26GO:0008270: zinc ion binding4.04E-03
27GO:0005096: GTPase activator activity7.01E-03
28GO:0004222: metalloendopeptidase activity7.25E-03
29GO:0035091: phosphatidylinositol binding1.01E-02
30GO:0003677: DNA binding1.14E-02
31GO:0000166: nucleotide binding1.16E-02
32GO:0015171: amino acid transmembrane transporter activity1.26E-02
33GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.94E-02
34GO:0004842: ubiquitin-protein transferase activity3.24E-02
35GO:0043565: sequence-specific DNA binding3.38E-02
36GO:0004672: protein kinase activity3.45E-02
37GO:0003729: mRNA binding3.49E-02
38GO:0004722: protein serine/threonine phosphatase activity4.30E-02
RankGO TermAdjusted P value
1GO:0070449: elongin complex0.00E+00
2GO:0031931: TORC1 complex1.73E-04
3GO:0009346: citrate lyase complex2.55E-04
4GO:0030127: COPII vesicle coat5.37E-04
5GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane7.49E-04
6GO:0000783: nuclear telomere cap complex9.77E-04
7GO:0030176: integral component of endoplasmic reticulum membrane2.07E-03
8GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.91E-03
9GO:0005778: peroxisomal membrane5.21E-03
10GO:0000932: P-body5.64E-03
11GO:0005834: heterotrimeric G-protein complex1.38E-02
12GO:0009706: chloroplast inner membrane1.51E-02
13GO:0005654: nucleoplasm1.74E-02
14GO:0005623: cell1.80E-02
15GO:0009705: plant-type vacuole membrane2.22E-02
16GO:0005634: nucleus4.01E-02
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Gene type



Gene DE type