co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0009069: serine family amino acid metabolic process	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
8	GO:0070178: D-serine metabolic process	0.00E+00
9	GO:0009913: epidermal cell differentiation	2.95E-07
10	GO:0048443: stamen development	4.74E-05
11	GO:0048825: cotyledon development	8.48E-05
12	GO:0008610: lipid biosynthetic process	1.02E-04
13	GO:0043266: regulation of potassium ion transport	1.46E-04
14	GO:0010480: microsporocyte differentiation	1.46E-04
15	GO:0031338: regulation of vesicle fusion	1.46E-04
16	GO:0080051: cutin transport	1.46E-04
17	GO:0043087: regulation of GTPase activity	1.46E-04
18	GO:2000021: regulation of ion homeostasis	1.46E-04
19	GO:0030244: cellulose biosynthetic process	2.33E-04
20	GO:0006633: fatty acid biosynthetic process	2.57E-04
21	GO:0010152: pollen maturation	2.99E-04
22	GO:0015908: fatty acid transport	3.33E-04
23	GO:0043255: regulation of carbohydrate biosynthetic process	3.33E-04
24	GO:0010115: regulation of abscisic acid biosynthetic process	3.33E-04
25	GO:0045717: negative regulation of fatty acid biosynthetic process	3.33E-04
26	GO:0010541: acropetal auxin transport	3.33E-04
27	GO:0010289: homogalacturonan biosynthetic process	3.33E-04
28	GO:0006695: cholesterol biosynthetic process	3.33E-04
29	GO:0010540: basipetal auxin transport	3.85E-04
30	GO:0009825: multidimensional cell growth	4.32E-04
31	GO:0010160: formation of animal organ boundary	5.47E-04
32	GO:0090630: activation of GTPase activity	5.47E-04
33	GO:2001295: malonyl-CoA biosynthetic process	5.47E-04
34	GO:0009416: response to light stimulus	7.73E-04
35	GO:0007231: osmosensory signaling pathway	7.83E-04
36	GO:0051639: actin filament network formation	7.83E-04
37	GO:0034059: response to anoxia	7.83E-04
38	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.83E-04
39	GO:0033500: carbohydrate homeostasis	1.04E-03
40	GO:0031122: cytoplasmic microtubule organization	1.04E-03
41	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.04E-03
42	GO:0010021: amylopectin biosynthetic process	1.04E-03
43	GO:0010222: stem vascular tissue pattern formation	1.04E-03
44	GO:0051764: actin crosslink formation	1.04E-03
45	GO:0006085: acetyl-CoA biosynthetic process	1.04E-03
46	GO:0071554: cell wall organization or biogenesis	1.27E-03
47	GO:0048497: maintenance of floral organ identity	1.31E-03
48	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.61E-03
49	GO:0060918: auxin transport	1.61E-03
50	GO:0010337: regulation of salicylic acid metabolic process	1.61E-03
51	GO:0006563: L-serine metabolic process	1.61E-03
52	GO:0006751: glutathione catabolic process	1.61E-03
53	GO:0048827: phyllome development	1.61E-03
54	GO:0042549: photosystem II stabilization	1.61E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.61E-03
56	GO:0016126: sterol biosynthetic process	1.81E-03
57	GO:0010067: procambium histogenesis	1.93E-03
58	GO:0015995: chlorophyll biosynthetic process	2.13E-03
59	GO:0048437: floral organ development	2.27E-03
60	GO:0007165: signal transduction	2.82E-03
61	GO:0009827: plant-type cell wall modification	3.00E-03
62	GO:0009733: response to auxin	3.25E-03
63	GO:0048507: meristem development	3.40E-03
64	GO:0033384: geranyl diphosphate biosynthetic process	3.40E-03
65	GO:0048589: developmental growth	3.40E-03
66	GO:0045337: farnesyl diphosphate biosynthetic process	3.40E-03
67	GO:0009638: phototropism	3.81E-03
68	GO:0006779: porphyrin-containing compound biosynthetic process	3.81E-03
69	GO:0009640: photomorphogenesis	3.83E-03
70	GO:0006782: protoporphyrinogen IX biosynthetic process	4.23E-03
71	GO:0019538: protein metabolic process	4.23E-03
72	GO:0006032: chitin catabolic process	4.23E-03
73	GO:0045036: protein targeting to chloroplast	4.23E-03
74	GO:0010215: cellulose microfibril organization	4.23E-03
75	GO:1903507: negative regulation of nucleic acid-templated transcription	4.67E-03
76	GO:0048229: gametophyte development	4.67E-03
77	GO:0046856: phosphatidylinositol dephosphorylation	4.67E-03
78	GO:0000038: very long-chain fatty acid metabolic process	4.67E-03
79	GO:0006816: calcium ion transport	4.67E-03
80	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.76E-03
81	GO:0008361: regulation of cell size	5.13E-03
82	GO:0012501: programmed cell death	5.13E-03
83	GO:0006820: anion transport	5.13E-03
84	GO:0010102: lateral root morphogenesis	5.60E-03
85	GO:0009785: blue light signaling pathway	5.60E-03
86	GO:0030048: actin filament-based movement	5.60E-03
87	GO:0010229: inflorescence development	5.60E-03
88	GO:0009718: anthocyanin-containing compound biosynthetic process	5.60E-03
89	GO:0010075: regulation of meristem growth	5.60E-03
90	GO:0010588: cotyledon vascular tissue pattern formation	5.60E-03
91	GO:0010223: secondary shoot formation	6.09E-03
92	GO:0009934: regulation of meristem structural organization	6.09E-03
93	GO:0010143: cutin biosynthetic process	6.09E-03
94	GO:0010167: response to nitrate	6.59E-03
95	GO:0070588: calcium ion transmembrane transport	6.59E-03
96	GO:0010053: root epidermal cell differentiation	6.59E-03
97	GO:0006636: unsaturated fatty acid biosynthetic process	7.10E-03
98	GO:0007010: cytoskeleton organization	7.63E-03
99	GO:0051017: actin filament bundle assembly	7.63E-03
100	GO:0048364: root development	7.90E-03
101	GO:0008299: isoprenoid biosynthetic process	8.18E-03
102	GO:0008152: metabolic process	8.47E-03
103	GO:0016998: cell wall macromolecule catabolic process	8.73E-03
104	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.30E-03
105	GO:0001944: vasculature development	9.89E-03
106	GO:0009845: seed germination	9.93E-03
107	GO:0010089: xylem development	1.05E-02
108	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.11E-02
109	GO:0042335: cuticle development	1.17E-02
110	GO:0048653: anther development	1.17E-02
111	GO:0010305: leaf vascular tissue pattern formation	1.24E-02
112	GO:0009958: positive gravitropism	1.24E-02
113	GO:0045489: pectin biosynthetic process	1.24E-02
114	GO:0007018: microtubule-based movement	1.30E-02
115	GO:0009908: flower development	1.36E-02
116	GO:0019252: starch biosynthetic process	1.37E-02
117	GO:0009791: post-embryonic development	1.37E-02
118	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.43E-02
119	GO:0030163: protein catabolic process	1.57E-02
120	GO:0009611: response to wounding	1.59E-02
121	GO:0009639: response to red or far red light	1.64E-02
122	GO:0016567: protein ubiquitination	1.83E-02
123	GO:0009911: positive regulation of flower development	1.86E-02
124	GO:0009816: defense response to bacterium, incompatible interaction	1.94E-02
125	GO:0055085: transmembrane transport	2.10E-02
126	GO:0006970: response to osmotic stress	2.12E-02
127	GO:0009651: response to salt stress	2.16E-02
128	GO:0010311: lateral root formation	2.33E-02
129	GO:0010218: response to far red light	2.41E-02
130	GO:0009834: plant-type secondary cell wall biogenesis	2.41E-02
131	GO:0009631: cold acclimation	2.49E-02
132	GO:0048527: lateral root development	2.49E-02
133	GO:0009910: negative regulation of flower development	2.49E-02
134	GO:0046777: protein autophosphorylation	2.61E-02
135	GO:0016051: carbohydrate biosynthetic process	2.66E-02
136	GO:0009637: response to blue light	2.66E-02
137	GO:0030001: metal ion transport	2.92E-02
138	GO:0045454: cell redox homeostasis	2.92E-02
139	GO:0009926: auxin polar transport	3.19E-02
140	GO:0016042: lipid catabolic process	3.50E-02
141	GO:0006468: protein phosphorylation	3.52E-02
142	GO:0031347: regulation of defense response	3.65E-02
143	GO:0009664: plant-type cell wall organization	3.75E-02
144	GO:0042538: hyperosmotic salinity response	3.75E-02
145	GO:0009753: response to jasmonic acid	3.86E-02
146	GO:0016310: phosphorylation	3.89E-02
147	GO:0009809: lignin biosynthetic process	3.94E-02
148	GO:0009873: ethylene-activated signaling pathway	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0030378: serine racemase activity	0.00E+00
2	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
5	GO:0038198: auxin receptor activity	0.00E+00
6	GO:0004163: diphosphomevalonate decarboxylase activity	0.00E+00
7	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
8	GO:1990534: thermospermine oxidase activity	0.00E+00
9	GO:0010011: auxin binding	1.71E-05
10	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.87E-05
11	GO:0008568: microtubule-severing ATPase activity	1.46E-04
12	GO:0015245: fatty acid transporter activity	1.46E-04
13	GO:0030941: chloroplast targeting sequence binding	1.46E-04
14	GO:0050139: nicotinate-N-glucosyltransferase activity	1.46E-04
15	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.46E-04
16	GO:0016413: O-acetyltransferase activity	1.48E-04
17	GO:0005096: GTPase activator activity	2.50E-04
18	GO:0000822: inositol hexakisphosphate binding	3.33E-04
19	GO:0003839: gamma-glutamylcyclotransferase activity	3.33E-04
20	GO:0033201: alpha-1,4-glucan synthase activity	3.33E-04
21	GO:0004312: fatty acid synthase activity	3.33E-04
22	GO:0005524: ATP binding	4.28E-04
23	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.39E-04
24	GO:0008253: 5'-nucleotidase activity	5.47E-04
25	GO:0004075: biotin carboxylase activity	5.47E-04
26	GO:0016805: dipeptidase activity	5.47E-04
27	GO:0070402: NADPH binding	5.47E-04
28	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	5.47E-04
29	GO:0004180: carboxypeptidase activity	5.47E-04
30	GO:0004373: glycogen (starch) synthase activity	5.47E-04
31	GO:0004445: inositol-polyphosphate 5-phosphatase activity	7.83E-04
32	GO:0001872: (1->3)-beta-D-glucan binding	7.83E-04
33	GO:0003878: ATP citrate synthase activity	7.83E-04
34	GO:0004506: squalene monooxygenase activity	1.04E-03
35	GO:0009011: starch synthase activity	1.04E-03
36	GO:0008526: phosphatidylinositol transporter activity	1.04E-03
37	GO:0051861: glycolipid binding	1.04E-03
38	GO:0004871: signal transducer activity	1.15E-03
39	GO:0017137: Rab GTPase binding	1.31E-03
40	GO:0003989: acetyl-CoA carboxylase activity	1.31E-03
41	GO:0008381: mechanically-gated ion channel activity	1.31E-03
42	GO:0042578: phosphoric ester hydrolase activity	1.61E-03
43	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.61E-03
44	GO:0015631: tubulin binding	1.93E-03
45	GO:0030247: polysaccharide binding	2.13E-03
46	GO:0004337: geranyltranstransferase activity	3.40E-03
47	GO:0035091: phosphatidylinositol binding	4.14E-03
48	GO:0004568: chitinase activity	4.23E-03
49	GO:0046872: metal ion binding	4.38E-03
50	GO:0004161: dimethylallyltranstransferase activity	4.67E-03
51	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.13E-03
52	GO:0004674: protein serine/threonine kinase activity	5.27E-03
53	GO:0016301: kinase activity	5.53E-03
54	GO:0004565: beta-galactosidase activity	5.60E-03
55	GO:0010329: auxin efflux transmembrane transporter activity	5.60E-03
56	GO:0005262: calcium channel activity	5.60E-03
57	GO:0008131: primary amine oxidase activity	6.09E-03
58	GO:0003774: motor activity	6.09E-03
59	GO:0004190: aspartic-type endopeptidase activity	6.59E-03
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.10E-03
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.10E-03
62	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.10E-03
63	GO:0003714: transcription corepressor activity	7.63E-03
64	GO:0033612: receptor serine/threonine kinase binding	8.73E-03
65	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.73E-03
66	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.30E-03
67	GO:0016829: lyase activity	9.93E-03
68	GO:0016853: isomerase activity	1.30E-02
69	GO:0008017: microtubule binding	1.33E-02
70	GO:0004518: nuclease activity	1.50E-02
71	GO:0051015: actin filament binding	1.57E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	2.01E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.01E-02
74	GO:0004683: calmodulin-dependent protein kinase activity	2.09E-02
75	GO:0005515: protein binding	2.14E-02
76	GO:0030145: manganese ion binding	2.49E-02
77	GO:0005516: calmodulin binding	2.59E-02
78	GO:0052689: carboxylic ester hydrolase activity	2.70E-02
79	GO:0042803: protein homodimerization activity	3.06E-02
80	GO:0016787: hydrolase activity	3.19E-02
81	GO:0005509: calcium ion binding	3.39E-02
82	GO:0003777: microtubule motor activity	4.24E-02
83	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.54E-02
84	GO:0004650: polygalacturonase activity	4.75E-02
85	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.75E-02
86	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.75E-02
87	GO:0003779: actin binding	4.96E-02
88	GO:0008289: lipid binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009930: longitudinal side of cell surface	0.00E+00
3	GO:0005886: plasma membrane	1.12E-06
4	GO:0009897: external side of plasma membrane	3.92E-06
5	GO:0009505: plant-type cell wall	2.54E-04
6	GO:0016328: lateral plasma membrane	5.47E-04
7	GO:0009346: citrate lyase complex	7.83E-04
8	GO:0032432: actin filament bundle	7.83E-04
9	GO:0031359: integral component of chloroplast outer membrane	2.27E-03
10	GO:0009501: amyloplast	2.63E-03
11	GO:0009570: chloroplast stroma	3.50E-03
12	GO:0016459: myosin complex	4.23E-03
13	GO:0005884: actin filament	4.67E-03
14	GO:0009574: preprophase band	5.60E-03
15	GO:0030659: cytoplasmic vesicle membrane	6.09E-03
16	GO:0005871: kinesin complex	1.11E-02
17	GO:0005770: late endosome	1.24E-02
18	GO:0046658: anchored component of plasma membrane	1.68E-02
19	GO:0000151: ubiquitin ligase complex	2.25E-02
20	GO:0019005: SCF ubiquitin ligase complex	2.25E-02
21	GO:0009707: chloroplast outer membrane	2.25E-02
22	GO:0005874: microtubule	2.36E-02
23	GO:0005768: endosome	3.29E-02
24	GO:0005834: heterotrimeric G-protein complex	4.65E-02
25	GO:0012505: endomembrane system	4.96E-02