co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0006833: water transport	2.29E-06
5	GO:0034220: ion transmembrane transport	1.14E-05
6	GO:0000038: very long-chain fatty acid metabolic process	2.83E-05
7	GO:0006633: fatty acid biosynthetic process	1.69E-04
8	GO:0042335: cuticle development	2.19E-04
9	GO:0046520: sphingoid biosynthetic process	2.72E-04
10	GO:0070509: calcium ion import	2.72E-04
11	GO:0006824: cobalt ion transport	2.72E-04
12	GO:0007263: nitric oxide mediated signal transduction	2.72E-04
13	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.72E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	2.72E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.72E-04
16	GO:0060627: regulation of vesicle-mediated transport	2.72E-04
17	GO:0010583: response to cyclopentenone	3.53E-04
18	GO:0000902: cell morphogenesis	3.90E-04
19	GO:0043069: negative regulation of programmed cell death	5.39E-04
20	GO:0010115: regulation of abscisic acid biosynthetic process	5.99E-04
21	GO:0034755: iron ion transmembrane transport	5.99E-04
22	GO:0031648: protein destabilization	5.99E-04
23	GO:0006695: cholesterol biosynthetic process	5.99E-04
24	GO:0010143: cutin biosynthetic process	9.06E-04
25	GO:0015840: urea transport	9.72E-04
26	GO:0071705: nitrogen compound transport	9.72E-04
27	GO:0045490: pectin catabolic process	1.17E-03
28	GO:0007017: microtubule-based process	1.37E-03
29	GO:0010731: protein glutathionylation	1.39E-03
30	GO:0051639: actin filament network formation	1.39E-03
31	GO:0034059: response to anoxia	1.39E-03
32	GO:0080170: hydrogen peroxide transmembrane transport	1.39E-03
33	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.39E-03
34	GO:0009650: UV protection	1.39E-03
35	GO:0010037: response to carbon dioxide	1.86E-03
36	GO:0015976: carbon utilization	1.86E-03
37	GO:0051764: actin crosslink formation	1.86E-03
38	GO:0071249: cellular response to nitrate	1.86E-03
39	GO:0006183: GTP biosynthetic process	1.86E-03
40	GO:2000122: negative regulation of stomatal complex development	1.86E-03
41	GO:0030104: water homeostasis	1.86E-03
42	GO:0019722: calcium-mediated signaling	1.94E-03
43	GO:0009826: unidimensional cell growth	2.15E-03
44	GO:0042254: ribosome biogenesis	2.35E-03
45	GO:0009972: cytidine deamination	2.93E-03
46	GO:0006561: proline biosynthetic process	2.93E-03
47	GO:0010358: leaf shaping	2.93E-03
48	GO:0016132: brassinosteroid biosynthetic process	3.02E-03
49	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.33E-03
50	GO:0042372: phylloquinone biosynthetic process	3.52E-03
51	GO:0009612: response to mechanical stimulus	3.52E-03
52	GO:0006694: steroid biosynthetic process	3.52E-03
53	GO:0010019: chloroplast-nucleus signaling pathway	3.52E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.52E-03
55	GO:0007267: cell-cell signaling	3.88E-03
56	GO:0050829: defense response to Gram-negative bacterium	4.15E-03
57	GO:0009645: response to low light intensity stimulus	4.15E-03
58	GO:0010444: guard mother cell differentiation	4.15E-03
59	GO:0009610: response to symbiotic fungus	4.15E-03
60	GO:0030497: fatty acid elongation	4.15E-03
61	GO:0007155: cell adhesion	4.82E-03
62	GO:0010411: xyloglucan metabolic process	5.13E-03
63	GO:0015995: chlorophyll biosynthetic process	5.13E-03
64	GO:0009808: lignin metabolic process	5.52E-03
65	GO:0009932: cell tip growth	5.52E-03
66	GO:0033384: geranyl diphosphate biosynthetic process	6.25E-03
67	GO:0009051: pentose-phosphate shunt, oxidative branch	6.25E-03
68	GO:0045337: farnesyl diphosphate biosynthetic process	6.25E-03
69	GO:0051865: protein autoubiquitination	6.25E-03
70	GO:0010119: regulation of stomatal movement	6.57E-03
71	GO:0009638: phototropism	7.03E-03
72	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.82E-03
73	GO:0006535: cysteine biosynthetic process from serine	7.82E-03
74	GO:0009688: abscisic acid biosynthetic process	7.82E-03
75	GO:0006810: transport	8.31E-03
76	GO:0009750: response to fructose	8.66E-03
77	GO:0009684: indoleacetic acid biosynthetic process	8.66E-03
78	GO:0010015: root morphogenesis	8.66E-03
79	GO:0015706: nitrate transport	9.52E-03
80	GO:0016024: CDP-diacylglycerol biosynthetic process	9.52E-03
81	GO:0042546: cell wall biogenesis	9.68E-03
82	GO:0006006: glucose metabolic process	1.04E-02
83	GO:0050826: response to freezing	1.04E-02
84	GO:0009725: response to hormone	1.04E-02
85	GO:0010207: photosystem II assembly	1.13E-02
86	GO:0042538: hyperosmotic salinity response	1.17E-02
87	GO:0009860: pollen tube growth	1.19E-02
88	GO:0009735: response to cytokinin	1.19E-02
89	GO:0009414: response to water deprivation	1.22E-02
90	GO:0010030: positive regulation of seed germination	1.23E-02
91	GO:0009969: xyloglucan biosynthetic process	1.23E-02
92	GO:0010167: response to nitrate	1.23E-02
93	GO:0071555: cell wall organization	1.27E-02
94	GO:0010025: wax biosynthetic process	1.33E-02
95	GO:0019762: glucosinolate catabolic process	1.33E-02
96	GO:0009416: response to light stimulus	1.37E-02
97	GO:0080167: response to karrikin	1.42E-02
98	GO:0051017: actin filament bundle assembly	1.43E-02
99	GO:0005992: trehalose biosynthetic process	1.43E-02
100	GO:0019344: cysteine biosynthetic process	1.43E-02
101	GO:0000027: ribosomal large subunit assembly	1.43E-02
102	GO:0048511: rhythmic process	1.64E-02
103	GO:0042545: cell wall modification	1.74E-02
104	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.75E-02
105	GO:0009624: response to nematode	1.79E-02
106	GO:0009411: response to UV	1.86E-02
107	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.86E-02
108	GO:0055085: transmembrane transport	1.95E-02
109	GO:0009306: protein secretion	1.97E-02
110	GO:0006284: base-excision repair	1.97E-02
111	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.09E-02
112	GO:0042391: regulation of membrane potential	2.21E-02
113	GO:0000413: protein peptidyl-prolyl isomerization	2.21E-02
114	GO:0042631: cellular response to water deprivation	2.21E-02
115	GO:0000226: microtubule cytoskeleton organization	2.21E-02
116	GO:0016042: lipid catabolic process	2.24E-02
117	GO:0055114: oxidation-reduction process	2.26E-02
118	GO:0010182: sugar mediated signaling pathway	2.33E-02
119	GO:0009741: response to brassinosteroid	2.33E-02
120	GO:0010268: brassinosteroid homeostasis	2.33E-02
121	GO:0042752: regulation of circadian rhythm	2.45E-02
122	GO:0009753: response to jasmonic acid	2.53E-02
123	GO:0042744: hydrogen peroxide catabolic process	2.56E-02
124	GO:0005975: carbohydrate metabolic process	2.58E-02
125	GO:0000302: response to reactive oxygen species	2.71E-02
126	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.71E-02
127	GO:0071554: cell wall organization or biogenesis	2.71E-02
128	GO:0002229: defense response to oomycetes	2.71E-02
129	GO:0007264: small GTPase mediated signal transduction	2.84E-02
130	GO:1901657: glycosyl compound metabolic process	2.97E-02
131	GO:0009828: plant-type cell wall loosening	3.10E-02
132	GO:0009567: double fertilization forming a zygote and endosperm	3.10E-02
133	GO:0016125: sterol metabolic process	3.10E-02
134	GO:0009739: response to gibberellin	3.47E-02
135	GO:0010027: thylakoid membrane organization	3.52E-02
136	GO:0016126: sterol biosynthetic process	3.52E-02
137	GO:0009627: systemic acquired resistance	3.80E-02
138	GO:0042128: nitrate assimilation	3.80E-02
139	GO:0009651: response to salt stress	3.96E-02
140	GO:0016311: dephosphorylation	4.10E-02
141	GO:0000160: phosphorelay signal transduction system	4.40E-02
142	GO:0009407: toxin catabolic process	4.55E-02
143	GO:0009834: plant-type secondary cell wall biogenesis	4.55E-02
144	GO:0009733: response to auxin	4.57E-02
145	GO:0007568: aging	4.71E-02
146	GO:0009631: cold acclimation	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0080132: fatty acid alpha-hydroxylase activity	0.00E+00
8	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
9	GO:0015250: water channel activity	1.99E-06
10	GO:0009374: biotin binding	2.72E-04
11	GO:0015200: methylammonium transmembrane transporter activity	2.72E-04
12	GO:0004328: formamidase activity	2.72E-04
13	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.72E-04
14	GO:0010012: steroid 22-alpha hydroxylase activity	2.72E-04
15	GO:0000170: sphingosine hydroxylase activity	2.72E-04
16	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.72E-04
17	GO:0003938: IMP dehydrogenase activity	5.99E-04
18	GO:0042284: sphingolipid delta-4 desaturase activity	5.99E-04
19	GO:0008378: galactosyltransferase activity	7.11E-04
20	GO:0019843: rRNA binding	7.24E-04
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.72E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	9.72E-04
23	GO:0050734: hydroxycinnamoyltransferase activity	9.72E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	9.72E-04
25	GO:0003993: acid phosphatase activity	1.04E-03
26	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.12E-03
27	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.12E-03
28	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.12E-03
29	GO:0005528: FK506 binding	1.24E-03
30	GO:0016851: magnesium chelatase activity	1.39E-03
31	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.39E-03
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.64E-03
33	GO:0030570: pectate lyase activity	1.79E-03
34	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.86E-03
35	GO:0015204: urea transmembrane transporter activity	1.86E-03
36	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.86E-03
37	GO:0004506: squalene monooxygenase activity	1.86E-03
38	GO:0004040: amidase activity	2.37E-03
39	GO:0003989: acetyl-CoA carboxylase activity	2.37E-03
40	GO:0008725: DNA-3-methyladenine glycosylase activity	2.37E-03
41	GO:0009922: fatty acid elongase activity	2.37E-03
42	GO:0004650: polygalacturonase activity	2.75E-03
43	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.93E-03
44	GO:0016208: AMP binding	2.93E-03
45	GO:0016688: L-ascorbate peroxidase activity	2.93E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.93E-03
47	GO:0008200: ion channel inhibitor activity	2.93E-03
48	GO:0008519: ammonium transmembrane transporter activity	2.93E-03
49	GO:0004130: cytochrome-c peroxidase activity	2.93E-03
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.02E-03
51	GO:0051753: mannan synthase activity	3.52E-03
52	GO:0005261: cation channel activity	3.52E-03
53	GO:0005242: inward rectifier potassium channel activity	3.52E-03
54	GO:0004124: cysteine synthase activity	3.52E-03
55	GO:0051920: peroxiredoxin activity	3.52E-03
56	GO:0004126: cytidine deaminase activity	3.52E-03
57	GO:0052689: carboxylic ester hydrolase activity	3.69E-03
58	GO:0005200: structural constituent of cytoskeleton	3.88E-03
59	GO:0016209: antioxidant activity	4.82E-03
60	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.13E-03
61	GO:0102483: scopolin beta-glucosidase activity	5.13E-03
62	GO:0003924: GTPase activity	5.73E-03
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.02E-03
64	GO:0004337: geranyltranstransferase activity	6.25E-03
65	GO:0016491: oxidoreductase activity	6.71E-03
66	GO:0005381: iron ion transmembrane transporter activity	7.03E-03
67	GO:0004805: trehalose-phosphatase activity	7.82E-03
68	GO:0008422: beta-glucosidase activity	7.87E-03
69	GO:0004161: dimethylallyltranstransferase activity	8.66E-03
70	GO:0004364: glutathione transferase activity	8.93E-03
71	GO:0008289: lipid binding	9.46E-03
72	GO:0004022: alcohol dehydrogenase (NAD) activity	1.04E-02
73	GO:0004089: carbonate dehydratase activity	1.04E-02
74	GO:0005262: calcium channel activity	1.04E-02
75	GO:0016788: hydrolase activity, acting on ester bonds	1.10E-02
76	GO:0005506: iron ion binding	1.23E-02
77	GO:0030552: cAMP binding	1.23E-02
78	GO:0030553: cGMP binding	1.23E-02
79	GO:0045330: aspartyl esterase activity	1.39E-02
80	GO:0004857: enzyme inhibitor activity	1.43E-02
81	GO:0003824: catalytic activity	1.49E-02
82	GO:0005216: ion channel activity	1.53E-02
83	GO:0030599: pectinesterase activity	1.69E-02
84	GO:0016746: transferase activity, transferring acyl groups	1.85E-02
85	GO:0004871: signal transducer activity	1.89E-02
86	GO:0008514: organic anion transmembrane transporter activity	1.97E-02
87	GO:0030551: cyclic nucleotide binding	2.21E-02
88	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.31E-02
89	GO:0016829: lyase activity	2.43E-02
90	GO:0005516: calmodulin binding	2.51E-02
91	GO:0019901: protein kinase binding	2.58E-02
92	GO:0005525: GTP binding	2.87E-02
93	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.89E-02
94	GO:0046910: pectinesterase inhibitor activity	2.89E-02
95	GO:0000156: phosphorelay response regulator activity	2.97E-02
96	GO:0051015: actin filament binding	2.97E-02
97	GO:0016791: phosphatase activity	3.10E-02
98	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.24E-02
99	GO:0016597: amino acid binding	3.38E-02
100	GO:0016413: O-acetyltransferase activity	3.38E-02
101	GO:0003735: structural constituent of ribosome	4.04E-02
102	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.25E-02
103	GO:0005096: GTPase activator activity	4.40E-02
104	GO:0005215: transporter activity	4.48E-02
105	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.55E-02
106	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.71E-02
107	GO:0004601: peroxidase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009505: plant-type cell wall	1.14E-09
2	GO:0005576: extracellular region	8.46E-09
3	GO:0031225: anchored component of membrane	5.67E-07
4	GO:0048046: apoplast	1.07E-06
5	GO:0005618: cell wall	1.80E-06
6	GO:0046658: anchored component of plasma membrane	4.85E-06
7	GO:0016020: membrane	4.07E-05
8	GO:0009507: chloroplast	4.19E-05
9	GO:0009941: chloroplast envelope	8.58E-05
10	GO:0009506: plasmodesma	9.10E-05
11	GO:0009570: chloroplast stroma	1.04E-04
12	GO:0005886: plasma membrane	1.12E-04
13	GO:0042807: central vacuole	2.07E-04
14	GO:0043674: columella	2.72E-04
15	GO:0045298: tubulin complex	3.90E-04
16	GO:0005887: integral component of plasma membrane	5.70E-04
17	GO:0009543: chloroplast thylakoid lumen	7.24E-04
18	GO:0009535: chloroplast thylakoid membrane	7.97E-04
19	GO:0009509: chromoplast	9.72E-04
20	GO:0009317: acetyl-CoA carboxylase complex	9.72E-04
21	GO:0010007: magnesium chelatase complex	9.72E-04
22	GO:0005773: vacuole	1.12E-03
23	GO:0032432: actin filament bundle	1.39E-03
24	GO:0005774: vacuolar membrane	2.45E-03
25	GO:0009533: chloroplast stromal thylakoid	4.15E-03
26	GO:0009534: chloroplast thylakoid	5.16E-03
27	GO:0000326: protein storage vacuole	5.52E-03
28	GO:0005783: endoplasmic reticulum	6.08E-03
29	GO:0031977: thylakoid lumen	8.57E-03
30	GO:0005884: actin filament	8.66E-03
31	GO:0005840: ribosome	1.37E-02
32	GO:0042651: thylakoid membrane	1.53E-02
33	GO:0005794: Golgi apparatus	1.74E-02
34	GO:0071944: cell periphery	2.97E-02
35	GO:0009705: plant-type vacuole membrane	3.10E-02
36	GO:0005778: peroxisomal membrane	3.24E-02
37	GO:0009295: nucleoid	3.24E-02
38	GO:0000151: ubiquitin ligase complex	4.25E-02
39	GO:0016021: integral component of membrane	4.49E-02
40	GO:0015934: large ribosomal subunit	4.71E-02