GO Enrichment Analysis of Co-expressed Genes with
AT2G42190
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0032544: plastid translation | 1.46E-15 |
| 6 | GO:0006412: translation | 5.28E-13 |
| 7 | GO:0015979: photosynthesis | 2.27E-07 |
| 8 | GO:0010027: thylakoid membrane organization | 3.94E-07 |
| 9 | GO:0009658: chloroplast organization | 1.04E-06 |
| 10 | GO:0042254: ribosome biogenesis | 1.11E-06 |
| 11 | GO:0042255: ribosome assembly | 1.37E-04 |
| 12 | GO:0071482: cellular response to light stimulus | 1.72E-04 |
| 13 | GO:0043489: RNA stabilization | 1.77E-04 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.77E-04 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 1.77E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 1.77E-04 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 2.94E-04 |
| 18 | GO:0009773: photosynthetic electron transport in photosystem I | 3.42E-04 |
| 19 | GO:0006352: DNA-templated transcription, initiation | 3.42E-04 |
| 20 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.01E-04 |
| 21 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 6.55E-04 |
| 22 | GO:0015714: phosphoenolpyruvate transport | 6.55E-04 |
| 23 | GO:0006954: inflammatory response | 6.55E-04 |
| 24 | GO:0090391: granum assembly | 6.55E-04 |
| 25 | GO:0006518: peptide metabolic process | 6.55E-04 |
| 26 | GO:0019344: cysteine biosynthetic process | 6.94E-04 |
| 27 | GO:0006241: CTP biosynthetic process | 9.34E-04 |
| 28 | GO:0006165: nucleoside diphosphate phosphorylation | 9.34E-04 |
| 29 | GO:0006228: UTP biosynthetic process | 9.34E-04 |
| 30 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 9.34E-04 |
| 31 | GO:2001141: regulation of RNA biosynthetic process | 9.34E-04 |
| 32 | GO:0009735: response to cytokinin | 1.07E-03 |
| 33 | GO:0006183: GTP biosynthetic process | 1.24E-03 |
| 34 | GO:0015713: phosphoglycerate transport | 1.24E-03 |
| 35 | GO:0006021: inositol biosynthetic process | 1.24E-03 |
| 36 | GO:0071483: cellular response to blue light | 1.24E-03 |
| 37 | GO:0006808: regulation of nitrogen utilization | 1.24E-03 |
| 38 | GO:0042335: cuticle development | 1.25E-03 |
| 39 | GO:0009247: glycolipid biosynthetic process | 1.57E-03 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.57E-03 |
| 41 | GO:0045454: cell redox homeostasis | 1.63E-03 |
| 42 | GO:0032502: developmental process | 1.76E-03 |
| 43 | GO:0032973: amino acid export | 1.94E-03 |
| 44 | GO:0046855: inositol phosphate dephosphorylation | 1.94E-03 |
| 45 | GO:0009409: response to cold | 2.09E-03 |
| 46 | GO:0009955: adaxial/abaxial pattern specification | 2.32E-03 |
| 47 | GO:1901259: chloroplast rRNA processing | 2.32E-03 |
| 48 | GO:0042372: phylloquinone biosynthetic process | 2.32E-03 |
| 49 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.32E-03 |
| 50 | GO:0030488: tRNA methylation | 2.32E-03 |
| 51 | GO:0009854: oxidative photosynthetic carbon pathway | 2.32E-03 |
| 52 | GO:0010555: response to mannitol | 2.32E-03 |
| 53 | GO:0009610: response to symbiotic fungus | 2.74E-03 |
| 54 | GO:0043090: amino acid import | 2.74E-03 |
| 55 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.74E-03 |
| 56 | GO:0050829: defense response to Gram-negative bacterium | 2.74E-03 |
| 57 | GO:0009642: response to light intensity | 3.17E-03 |
| 58 | GO:0006353: DNA-templated transcription, termination | 3.17E-03 |
| 59 | GO:0006605: protein targeting | 3.17E-03 |
| 60 | GO:0019375: galactolipid biosynthetic process | 3.17E-03 |
| 61 | GO:0022900: electron transport chain | 3.63E-03 |
| 62 | GO:0009657: plastid organization | 3.63E-03 |
| 63 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.10E-03 |
| 64 | GO:0009245: lipid A biosynthetic process | 4.10E-03 |
| 65 | GO:0080144: amino acid homeostasis | 4.10E-03 |
| 66 | GO:0006783: heme biosynthetic process | 4.10E-03 |
| 67 | GO:0000373: Group II intron splicing | 4.10E-03 |
| 68 | GO:0010205: photoinhibition | 4.60E-03 |
| 69 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.11E-03 |
| 70 | GO:0006535: cysteine biosynthetic process from serine | 5.11E-03 |
| 71 | GO:0006415: translational termination | 5.65E-03 |
| 72 | GO:0019684: photosynthesis, light reaction | 5.65E-03 |
| 73 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.65E-03 |
| 74 | GO:0009073: aromatic amino acid family biosynthetic process | 5.65E-03 |
| 75 | GO:0043085: positive regulation of catalytic activity | 5.65E-03 |
| 76 | GO:0006790: sulfur compound metabolic process | 6.20E-03 |
| 77 | GO:0055114: oxidation-reduction process | 6.23E-03 |
| 78 | GO:0010628: positive regulation of gene expression | 6.78E-03 |
| 79 | GO:0006006: glucose metabolic process | 6.78E-03 |
| 80 | GO:0010207: photosystem II assembly | 7.37E-03 |
| 81 | GO:0019853: L-ascorbic acid biosynthetic process | 7.98E-03 |
| 82 | GO:0090351: seedling development | 7.98E-03 |
| 83 | GO:0046854: phosphatidylinositol phosphorylation | 7.98E-03 |
| 84 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.61E-03 |
| 85 | GO:0000027: ribosomal large subunit assembly | 9.26E-03 |
| 86 | GO:0061077: chaperone-mediated protein folding | 1.06E-02 |
| 87 | GO:0031408: oxylipin biosynthetic process | 1.06E-02 |
| 88 | GO:0016226: iron-sulfur cluster assembly | 1.13E-02 |
| 89 | GO:0009411: response to UV | 1.20E-02 |
| 90 | GO:0019722: calcium-mediated signaling | 1.27E-02 |
| 91 | GO:0009561: megagametogenesis | 1.27E-02 |
| 92 | GO:0009306: protein secretion | 1.27E-02 |
| 93 | GO:0009790: embryo development | 1.42E-02 |
| 94 | GO:0000413: protein peptidyl-prolyl isomerization | 1.43E-02 |
| 95 | GO:0009741: response to brassinosteroid | 1.50E-02 |
| 96 | GO:0006662: glycerol ether metabolic process | 1.50E-02 |
| 97 | GO:0006633: fatty acid biosynthetic process | 1.52E-02 |
| 98 | GO:0006413: translational initiation | 1.56E-02 |
| 99 | GO:1901657: glycosyl compound metabolic process | 1.91E-02 |
| 100 | GO:0009567: double fertilization forming a zygote and endosperm | 2.00E-02 |
| 101 | GO:0008380: RNA splicing | 2.00E-02 |
| 102 | GO:0007267: cell-cell signaling | 2.09E-02 |
| 103 | GO:0009416: response to light stimulus | 2.20E-02 |
| 104 | GO:0009627: systemic acquired resistance | 2.45E-02 |
| 105 | GO:0018298: protein-chromophore linkage | 2.74E-02 |
| 106 | GO:0006457: protein folding | 3.04E-02 |
| 107 | GO:0009631: cold acclimation | 3.04E-02 |
| 108 | GO:0080167: response to karrikin | 3.22E-02 |
| 109 | GO:0009853: photorespiration | 3.24E-02 |
| 110 | GO:0045087: innate immune response | 3.24E-02 |
| 111 | GO:0009637: response to blue light | 3.24E-02 |
| 112 | GO:0034599: cellular response to oxidative stress | 3.35E-02 |
| 113 | GO:0006839: mitochondrial transport | 3.56E-02 |
| 114 | GO:0042542: response to hydrogen peroxide | 3.78E-02 |
| 115 | GO:0051707: response to other organism | 3.88E-02 |
| 116 | GO:0010114: response to red light | 3.88E-02 |
| 117 | GO:0006812: cation transport | 4.56E-02 |
| 118 | GO:0009585: red, far-red light phototransduction | 4.80E-02 |
| 119 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.92E-02 |
| 120 | GO:0006397: mRNA processing | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 8.62E-21 |
| 8 | GO:0003735: structural constituent of ribosome | 1.36E-14 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.69E-07 |
| 10 | GO:0001053: plastid sigma factor activity | 2.40E-05 |
| 11 | GO:0016987: sigma factor activity | 2.40E-05 |
| 12 | GO:0005528: FK506 binding | 3.50E-05 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.77E-04 |
| 14 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 1.77E-04 |
| 15 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.77E-04 |
| 16 | GO:0009374: biotin binding | 1.77E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.77E-04 |
| 18 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.01E-04 |
| 19 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.01E-04 |
| 20 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.01E-04 |
| 21 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.01E-04 |
| 22 | GO:0016630: protochlorophyllide reductase activity | 4.01E-04 |
| 23 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.01E-04 |
| 24 | GO:0008266: poly(U) RNA binding | 5.04E-04 |
| 25 | GO:0016491: oxidoreductase activity | 5.47E-04 |
| 26 | GO:0017150: tRNA dihydrouridine synthase activity | 6.55E-04 |
| 27 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.55E-04 |
| 28 | GO:0051536: iron-sulfur cluster binding | 6.94E-04 |
| 29 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.98E-04 |
| 30 | GO:0008097: 5S rRNA binding | 9.34E-04 |
| 31 | GO:0035250: UDP-galactosyltransferase activity | 9.34E-04 |
| 32 | GO:0016149: translation release factor activity, codon specific | 9.34E-04 |
| 33 | GO:0004550: nucleoside diphosphate kinase activity | 9.34E-04 |
| 34 | GO:0003727: single-stranded RNA binding | 1.07E-03 |
| 35 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.24E-03 |
| 36 | GO:0043495: protein anchor | 1.24E-03 |
| 37 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.24E-03 |
| 38 | GO:0015035: protein disulfide oxidoreductase activity | 1.47E-03 |
| 39 | GO:0003989: acetyl-CoA carboxylase activity | 1.57E-03 |
| 40 | GO:0004040: amidase activity | 1.57E-03 |
| 41 | GO:0003959: NADPH dehydrogenase activity | 1.57E-03 |
| 42 | GO:0030414: peptidase inhibitor activity | 1.57E-03 |
| 43 | GO:0031177: phosphopantetheine binding | 1.94E-03 |
| 44 | GO:0016208: AMP binding | 1.94E-03 |
| 45 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.12E-03 |
| 46 | GO:0004124: cysteine synthase activity | 2.32E-03 |
| 47 | GO:0051920: peroxiredoxin activity | 2.32E-03 |
| 48 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.32E-03 |
| 49 | GO:0000035: acyl binding | 2.32E-03 |
| 50 | GO:0009055: electron carrier activity | 2.50E-03 |
| 51 | GO:0019899: enzyme binding | 2.74E-03 |
| 52 | GO:0016209: antioxidant activity | 3.17E-03 |
| 53 | GO:0008312: 7S RNA binding | 3.17E-03 |
| 54 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.17E-03 |
| 55 | GO:0004222: metalloendopeptidase activity | 3.41E-03 |
| 56 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.63E-03 |
| 57 | GO:0003747: translation release factor activity | 4.10E-03 |
| 58 | GO:0008047: enzyme activator activity | 5.11E-03 |
| 59 | GO:0008794: arsenate reductase (glutaredoxin) activity | 5.65E-03 |
| 60 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 6.78E-03 |
| 61 | GO:0031072: heat shock protein binding | 6.78E-03 |
| 62 | GO:0003690: double-stranded DNA binding | 7.02E-03 |
| 63 | GO:0022891: substrate-specific transmembrane transporter activity | 1.20E-02 |
| 64 | GO:0047134: protein-disulfide reductase activity | 1.35E-02 |
| 65 | GO:0004791: thioredoxin-disulfide reductase activity | 1.58E-02 |
| 66 | GO:0010181: FMN binding | 1.58E-02 |
| 67 | GO:0015297: antiporter activity | 1.60E-02 |
| 68 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.91E-02 |
| 69 | GO:0003743: translation initiation factor activity | 1.96E-02 |
| 70 | GO:0016168: chlorophyll binding | 2.36E-02 |
| 71 | GO:0102483: scopolin beta-glucosidase activity | 2.55E-02 |
| 72 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.74E-02 |
| 73 | GO:0003729: mRNA binding | 2.82E-02 |
| 74 | GO:0003746: translation elongation factor activity | 3.24E-02 |
| 75 | GO:0008422: beta-glucosidase activity | 3.45E-02 |
| 76 | GO:0050661: NADP binding | 3.56E-02 |
| 77 | GO:0004185: serine-type carboxypeptidase activity | 3.88E-02 |
| 78 | GO:0005509: calcium ion binding | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 7.77E-63 |
| 4 | GO:0009570: chloroplast stroma | 2.24E-42 |
| 5 | GO:0009941: chloroplast envelope | 5.11E-34 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.79E-16 |
| 7 | GO:0005840: ribosome | 8.92E-16 |
| 8 | GO:0009579: thylakoid | 3.49E-15 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 5.91E-14 |
| 10 | GO:0031977: thylakoid lumen | 2.07E-09 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 9.55E-07 |
| 12 | GO:0009534: chloroplast thylakoid | 1.05E-06 |
| 13 | GO:0009295: nucleoid | 1.02E-05 |
| 14 | GO:0000311: plastid large ribosomal subunit | 1.32E-05 |
| 15 | GO:0009536: plastid | 1.79E-05 |
| 16 | GO:0000312: plastid small ribosomal subunit | 2.03E-05 |
| 17 | GO:0019898: extrinsic component of membrane | 1.27E-04 |
| 18 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.77E-04 |
| 19 | GO:0009547: plastid ribosome | 1.77E-04 |
| 20 | GO:0031969: chloroplast membrane | 2.20E-04 |
| 21 | GO:0080085: signal recognition particle, chloroplast targeting | 4.01E-04 |
| 22 | GO:0009508: plastid chromosome | 4.47E-04 |
| 23 | GO:0009509: chromoplast | 6.55E-04 |
| 24 | GO:0009317: acetyl-CoA carboxylase complex | 6.55E-04 |
| 25 | GO:0042646: plastid nucleoid | 9.34E-04 |
| 26 | GO:0016363: nuclear matrix | 2.32E-03 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 2.38E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 2.74E-03 |
| 29 | GO:0015934: large ribosomal subunit | 3.57E-03 |
| 30 | GO:0009539: photosystem II reaction center | 3.63E-03 |
| 31 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.63E-03 |
| 32 | GO:0022627: cytosolic small ribosomal subunit | 4.05E-03 |
| 33 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.10E-03 |
| 34 | GO:0005763: mitochondrial small ribosomal subunit | 4.10E-03 |
| 35 | GO:0009505: plant-type cell wall | 6.41E-03 |
| 36 | GO:0030095: chloroplast photosystem II | 7.37E-03 |
| 37 | GO:0009706: chloroplast inner membrane | 9.66E-03 |
| 38 | GO:0042651: thylakoid membrane | 9.92E-03 |
| 39 | GO:0015935: small ribosomal subunit | 1.06E-02 |
| 40 | GO:0048046: apoplast | 1.45E-02 |
| 41 | GO:0009523: photosystem II | 1.66E-02 |
| 42 | GO:0071944: cell periphery | 1.91E-02 |
| 43 | GO:0022626: cytosolic ribosome | 2.08E-02 |
| 44 | GO:0005778: peroxisomal membrane | 2.09E-02 |
| 45 | GO:0022625: cytosolic large ribosomal subunit | 3.38E-02 |