co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
8	GO:0060416: response to growth hormone	0.00E+00
9	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
10	GO:0032544: plastid translation	1.44E-07
11	GO:0006412: translation	9.36E-07
12	GO:0009658: chloroplast organization	1.31E-05
13	GO:0042254: ribosome biogenesis	1.38E-05
14	GO:0006518: peptide metabolic process	1.48E-05
15	GO:0010206: photosystem II repair	1.60E-05
16	GO:0009767: photosynthetic electron transport chain	5.53E-05
17	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	5.93E-05
18	GO:0015995: chlorophyll biosynthetic process	7.98E-05
19	GO:0032543: mitochondrial translation	9.36E-05
20	GO:0006655: phosphatidylglycerol biosynthetic process	1.36E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	3.02E-04
22	GO:2000021: regulation of ion homeostasis	3.02E-04
23	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.02E-04
24	GO:0000476: maturation of 4.5S rRNA	3.02E-04
25	GO:0000967: rRNA 5'-end processing	3.02E-04
26	GO:1903409: reactive oxygen species biosynthetic process	3.02E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.02E-04
28	GO:0043266: regulation of potassium ion transport	3.02E-04
29	GO:0010027: thylakoid membrane organization	6.32E-04
30	GO:0080148: negative regulation of response to water deprivation	6.60E-04
31	GO:0010270: photosystem II oxygen evolving complex assembly	6.60E-04
32	GO:0034470: ncRNA processing	6.60E-04
33	GO:0046741: transport of virus in host, tissue to tissue	6.60E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.60E-04
35	GO:0045717: negative regulation of fatty acid biosynthetic process	6.60E-04
36	GO:0018026: peptidyl-lysine monomethylation	6.60E-04
37	GO:0009773: photosynthetic electron transport in photosystem I	7.19E-04
38	GO:0006415: translational termination	7.19E-04
39	GO:0009073: aromatic amino acid family biosynthetic process	7.19E-04
40	GO:0016024: CDP-diacylglycerol biosynthetic process	8.22E-04
41	GO:0009407: toxin catabolic process	9.97E-04
42	GO:0010207: photosystem II assembly	1.04E-03
43	GO:2001295: malonyl-CoA biosynthetic process	1.07E-03
44	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.07E-03
45	GO:0006954: inflammatory response	1.07E-03
46	GO:0015979: photosynthesis	1.12E-03
47	GO:0006633: fatty acid biosynthetic process	1.28E-03
48	GO:0043572: plastid fission	1.53E-03
49	GO:0055070: copper ion homeostasis	1.53E-03
50	GO:0010371: regulation of gibberellin biosynthetic process	1.53E-03
51	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.53E-03
52	GO:0016556: mRNA modification	1.53E-03
53	GO:0006424: glutamyl-tRNA aminoacylation	1.53E-03
54	GO:0009636: response to toxic substance	1.89E-03
55	GO:0006808: regulation of nitrogen utilization	2.06E-03
56	GO:0019464: glycine decarboxylation via glycine cleavage system	2.06E-03
57	GO:0006749: glutathione metabolic process	2.06E-03
58	GO:0031122: cytoplasmic microtubule organization	2.06E-03
59	GO:0006546: glycine catabolic process	2.06E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	2.63E-03
61	GO:0035434: copper ion transmembrane transport	2.63E-03
62	GO:0016123: xanthophyll biosynthetic process	2.63E-03
63	GO:0000304: response to singlet oxygen	2.63E-03
64	GO:0045487: gibberellin catabolic process	2.63E-03
65	GO:0000413: protein peptidyl-prolyl isomerization	2.64E-03
66	GO:0010405: arabinogalactan protein metabolic process	3.24E-03
67	GO:0006751: glutathione catabolic process	3.24E-03
68	GO:0006828: manganese ion transport	3.24E-03
69	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.24E-03
70	GO:0010190: cytochrome b6f complex assembly	3.24E-03
71	GO:0071554: cell wall organization or biogenesis	3.50E-03
72	GO:0042026: protein refolding	3.90E-03
73	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.90E-03
74	GO:0006458: 'de novo' protein folding	3.90E-03
75	GO:0009735: response to cytokinin	4.13E-03
76	GO:0009395: phospholipid catabolic process	4.60E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.60E-03
78	GO:0016126: sterol biosynthetic process	5.06E-03
79	GO:0048564: photosystem I assembly	5.35E-03
80	GO:0008610: lipid biosynthetic process	5.35E-03
81	GO:0042255: ribosome assembly	5.35E-03
82	GO:0006353: DNA-templated transcription, termination	5.35E-03
83	GO:0010078: maintenance of root meristem identity	5.35E-03
84	GO:0009704: de-etiolation	5.35E-03
85	GO:0043562: cellular response to nitrogen levels	6.13E-03
86	GO:0009657: plastid organization	6.13E-03
87	GO:0018298: protein-chromophore linkage	6.61E-03
88	GO:0048527: lateral root development	7.65E-03
89	GO:0010205: photoinhibition	7.80E-03
90	GO:0006779: porphyrin-containing compound biosynthetic process	7.80E-03
91	GO:0006782: protoporphyrinogen IX biosynthetic process	8.70E-03
92	GO:0019538: protein metabolic process	8.70E-03
93	GO:0006839: mitochondrial transport	9.56E-03
94	GO:0030001: metal ion transport	9.56E-03
95	GO:0018119: peptidyl-cysteine S-nitrosylation	9.63E-03
96	GO:0009684: indoleacetic acid biosynthetic process	9.63E-03
97	GO:0006816: calcium ion transport	9.63E-03
98	GO:0019684: photosynthesis, light reaction	9.63E-03
99	GO:0009793: embryo development ending in seed dormancy	1.00E-02
100	GO:0006810: transport	1.12E-02
101	GO:0010588: cotyledon vascular tissue pattern formation	1.16E-02
102	GO:0010628: positive regulation of gene expression	1.16E-02
103	GO:0048467: gynoecium development	1.26E-02
104	GO:0010020: chloroplast fission	1.26E-02
105	GO:0006636: unsaturated fatty acid biosynthetic process	1.48E-02
106	GO:0006418: tRNA aminoacylation for protein translation	1.71E-02
107	GO:0061077: chaperone-mediated protein folding	1.82E-02
108	GO:0006508: proteolysis	1.82E-02
109	GO:0031408: oxylipin biosynthetic process	1.82E-02
110	GO:0042545: cell wall modification	2.03E-02
111	GO:0009306: protein secretion	2.20E-02
112	GO:0016117: carotenoid biosynthetic process	2.33E-02
113	GO:0008033: tRNA processing	2.46E-02
114	GO:0010087: phloem or xylem histogenesis	2.46E-02
115	GO:0080022: primary root development	2.46E-02
116	GO:0006457: protein folding	2.52E-02
117	GO:0009958: positive gravitropism	2.59E-02
118	GO:0016042: lipid catabolic process	2.71E-02
119	GO:0006814: sodium ion transport	2.73E-02
120	GO:0009851: auxin biosynthetic process	2.87E-02
121	GO:0048825: cotyledon development	2.87E-02
122	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.01E-02
123	GO:0002229: defense response to oomycetes	3.01E-02
124	GO:0032502: developmental process	3.16E-02
125	GO:0007264: small GTPase mediated signal transduction	3.16E-02
126	GO:0030163: protein catabolic process	3.31E-02
127	GO:0040008: regulation of growth	3.44E-02
128	GO:0016125: sterol metabolic process	3.46E-02
129	GO:0045490: pectin catabolic process	3.61E-02
130	GO:0051607: defense response to virus	3.76E-02
131	GO:0009615: response to virus	3.92E-02
132	GO:0009627: systemic acquired resistance	4.24E-02
133	GO:0008380: RNA splicing	4.30E-02
134	GO:0009817: defense response to fungus, incompatible interaction	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:1990534: thermospermine oxidase activity	0.00E+00
3	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
7	GO:0004496: mevalonate kinase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	1.35E-13
10	GO:0003735: structural constituent of ribosome	4.65E-07
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.77E-06
12	GO:0016851: magnesium chelatase activity	3.30E-05
13	GO:0016149: translation release factor activity, codon specific	3.30E-05
14	GO:0008236: serine-type peptidase activity	8.78E-05
15	GO:0005528: FK506 binding	1.11E-04
16	GO:0051920: peroxiredoxin activity	1.85E-04
17	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.85E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.02E-04
19	GO:0004328: formamidase activity	3.02E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.02E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.02E-04
22	GO:0001530: lipopolysaccharide binding	3.02E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	3.02E-04
24	GO:0008568: microtubule-severing ATPase activity	3.02E-04
25	GO:0004163: diphosphomevalonate decarboxylase activity	3.02E-04
26	GO:0016209: antioxidant activity	3.05E-04
27	GO:0004033: aldo-keto reductase (NADP) activity	3.05E-04
28	GO:0003747: translation release factor activity	4.52E-04
29	GO:0016788: hydrolase activity, acting on ester bonds	6.32E-04
30	GO:0003839: gamma-glutamylcyclotransferase activity	6.60E-04
31	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.60E-04
32	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.60E-04
33	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.60E-04
34	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.60E-04
35	GO:0004222: metalloendopeptidase activity	9.97E-04
36	GO:0030267: glyoxylate reductase (NADP) activity	1.07E-03
37	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.07E-03
38	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.07E-03
39	GO:0016531: copper chaperone activity	1.07E-03
40	GO:0019829: cation-transporting ATPase activity	1.07E-03
41	GO:0017150: tRNA dihydrouridine synthase activity	1.07E-03
42	GO:0003913: DNA photolyase activity	1.07E-03
43	GO:0002161: aminoacyl-tRNA editing activity	1.07E-03
44	GO:0004075: biotin carboxylase activity	1.07E-03
45	GO:0004751: ribose-5-phosphate isomerase activity	1.07E-03
46	GO:0043023: ribosomal large subunit binding	1.53E-03
47	GO:0008097: 5S rRNA binding	1.53E-03
48	GO:0008508: bile acid:sodium symporter activity	1.53E-03
49	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.53E-03
50	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.53E-03
51	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.53E-03
52	GO:0004364: glutathione transferase activity	1.55E-03
53	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.06E-03
54	GO:0016279: protein-lysine N-methyltransferase activity	2.06E-03
55	GO:0016836: hydro-lyase activity	2.06E-03
56	GO:0004045: aminoacyl-tRNA hydrolase activity	2.06E-03
57	GO:0043495: protein anchor	2.06E-03
58	GO:0003989: acetyl-CoA carboxylase activity	2.63E-03
59	GO:0016846: carbon-sulfur lyase activity	2.63E-03
60	GO:0008200: ion channel inhibitor activity	3.24E-03
61	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.24E-03
62	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.24E-03
63	GO:0042578: phosphoric ester hydrolase activity	3.24E-03
64	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.90E-03
65	GO:0009881: photoreceptor activity	4.60E-03
66	GO:0019899: enzyme binding	4.60E-03
67	GO:0043295: glutathione binding	4.60E-03
68	GO:0016413: O-acetyltransferase activity	4.78E-03
69	GO:0008312: 7S RNA binding	5.35E-03
70	GO:0043022: ribosome binding	5.35E-03
71	GO:0004252: serine-type endopeptidase activity	5.68E-03
72	GO:0005375: copper ion transmembrane transporter activity	6.13E-03
73	GO:0047617: acyl-CoA hydrolase activity	7.80E-03
74	GO:0005384: manganese ion transmembrane transporter activity	7.80E-03
75	GO:0016491: oxidoreductase activity	9.03E-03
76	GO:0044183: protein binding involved in protein folding	9.63E-03
77	GO:0008378: galactosyltransferase activity	1.06E-02
78	GO:0015095: magnesium ion transmembrane transporter activity	1.16E-02
79	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.16E-02
80	GO:0004022: alcohol dehydrogenase (NAD) activity	1.16E-02
81	GO:0008266: poly(U) RNA binding	1.26E-02
82	GO:0008131: primary amine oxidase activity	1.26E-02
83	GO:0004601: peroxidase activity	1.31E-02
84	GO:0003690: double-stranded DNA binding	1.52E-02
85	GO:0045330: aspartyl esterase activity	1.62E-02
86	GO:0043424: protein histidine kinase binding	1.71E-02
87	GO:0008324: cation transmembrane transporter activity	1.71E-02
88	GO:0004176: ATP-dependent peptidase activity	1.82E-02
89	GO:0052689: carboxylic ester hydrolase activity	1.95E-02
90	GO:0030599: pectinesterase activity	1.97E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	2.07E-02
92	GO:0003727: single-stranded RNA binding	2.20E-02
93	GO:0004812: aminoacyl-tRNA ligase activity	2.33E-02
94	GO:0016758: transferase activity, transferring hexosyl groups	2.55E-02
95	GO:0003713: transcription coactivator activity	2.59E-02
96	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.69E-02
97	GO:0019901: protein kinase binding	2.87E-02
98	GO:0008237: metallopeptidase activity	3.61E-02
99	GO:0016597: amino acid binding	3.76E-02
100	GO:0016168: chlorophyll binding	4.07E-02
101	GO:0008289: lipid binding	4.22E-02
102	GO:0005509: calcium ion binding	4.29E-02
103	GO:0042802: identical protein binding	4.57E-02
104	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.73E-02
105	GO:0016887: ATPase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0005835: fatty acid synthase complex	0.00E+00
4	GO:0009507: chloroplast	1.02E-52
5	GO:0009570: chloroplast stroma	1.33E-29
6	GO:0009941: chloroplast envelope	3.68E-24
7	GO:0009543: chloroplast thylakoid lumen	1.40E-21
8	GO:0009535: chloroplast thylakoid membrane	2.16E-17
9	GO:0031977: thylakoid lumen	7.28E-13
10	GO:0009534: chloroplast thylakoid	1.41E-12
11	GO:0009579: thylakoid	1.85E-11
12	GO:0005840: ribosome	8.51E-08
13	GO:0009533: chloroplast stromal thylakoid	5.30E-06
14	GO:0010007: magnesium chelatase complex	1.48E-05
15	GO:0009536: plastid	5.49E-05
16	GO:0030095: chloroplast photosystem II	6.71E-05
17	GO:0009654: photosystem II oxygen evolving complex	1.29E-04
18	GO:0031969: chloroplast membrane	1.78E-04
19	GO:0009547: plastid ribosome	3.02E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.02E-04
21	GO:0019898: extrinsic component of membrane	3.60E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.52E-04
23	GO:0080085: signal recognition particle, chloroplast targeting	6.60E-04
24	GO:0000311: plastid large ribosomal subunit	8.22E-04
25	GO:0000312: plastid small ribosomal subunit	1.04E-03
26	GO:0005960: glycine cleavage complex	1.53E-03
27	GO:0042651: thylakoid membrane	1.58E-03
28	GO:0009295: nucleoid	4.51E-03
29	GO:0010287: plastoglobule	4.64E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.13E-03
31	GO:0015934: large ribosomal subunit	7.65E-03
32	GO:0009508: plastid chromosome	1.16E-02
33	GO:0043234: protein complex	1.48E-02
34	GO:0022626: cytosolic ribosome	1.61E-02
35	GO:0009706: chloroplast inner membrane	2.09E-02
36	GO:0009523: photosystem II	2.87E-02
37	GO:0030529: intracellular ribonucleoprotein complex	3.92E-02
38	GO:0022627: cytosolic small ribosomal subunit	4.75E-02