co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G40950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0006482: protein demethylation	0.00E+00
4	GO:0048227: plasma membrane to endosome transport	0.00E+00
5	GO:0051603: proteolysis involved in cellular protein catabolic process	2.26E-05
6	GO:0006098: pentose-phosphate shunt	8.49E-05
7	GO:0010265: SCF complex assembly	9.69E-05
8	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	9.69E-05
9	GO:0048455: stamen formation	9.69E-05
10	GO:0006805: xenobiotic metabolic process	9.69E-05
11	GO:0000303: response to superoxide	9.69E-05
12	GO:0080173: male-female gamete recognition during double fertilization	9.69E-05
13	GO:1902000: homogentisate catabolic process	2.28E-04
14	GO:1905182: positive regulation of urease activity	2.28E-04
15	GO:0019521: D-gluconate metabolic process	2.28E-04
16	GO:0019374: galactolipid metabolic process	2.28E-04
17	GO:0030010: establishment of cell polarity	2.28E-04
18	GO:0051788: response to misfolded protein	2.28E-04
19	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.78E-04
20	GO:0010359: regulation of anion channel activity	3.80E-04
21	GO:0080055: low-affinity nitrate transport	3.80E-04
22	GO:0009072: aromatic amino acid family metabolic process	3.80E-04
23	GO:0048586: regulation of long-day photoperiodism, flowering	3.80E-04
24	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.80E-04
25	GO:0042147: retrograde transport, endosome to Golgi	5.25E-04
26	GO:0001676: long-chain fatty acid metabolic process	5.46E-04
27	GO:2001289: lipid X metabolic process	5.46E-04
28	GO:0006809: nitric oxide biosynthetic process	5.46E-04
29	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	7.26E-04
30	GO:0006878: cellular copper ion homeostasis	7.26E-04
31	GO:0010363: regulation of plant-type hypersensitive response	7.26E-04
32	GO:0010193: response to ozone	7.47E-04
33	GO:0009790: embryo development	8.11E-04
34	GO:0006464: cellular protein modification process	8.97E-04
35	GO:0098719: sodium ion import across plasma membrane	9.17E-04
36	GO:0046283: anthocyanin-containing compound metabolic process	9.17E-04
37	GO:0030308: negative regulation of cell growth	9.17E-04
38	GO:0006574: valine catabolic process	1.12E-03
39	GO:0006751: glutathione catabolic process	1.12E-03
40	GO:0043248: proteasome assembly	1.12E-03
41	GO:1902456: regulation of stomatal opening	1.12E-03
42	GO:1900425: negative regulation of defense response to bacterium	1.12E-03
43	GO:0048280: vesicle fusion with Golgi apparatus	1.34E-03
44	GO:0010555: response to mannitol	1.34E-03
45	GO:2000067: regulation of root morphogenesis	1.34E-03
46	GO:0050790: regulation of catalytic activity	1.57E-03
47	GO:0009610: response to symbiotic fungus	1.57E-03
48	GO:0006955: immune response	1.57E-03
49	GO:0048528: post-embryonic root development	1.57E-03
50	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.57E-03
51	GO:0009867: jasmonic acid mediated signaling pathway	1.72E-03
52	GO:0006605: protein targeting	1.81E-03
53	GO:0016559: peroxisome fission	1.81E-03
54	GO:0006644: phospholipid metabolic process	1.81E-03
55	GO:0006002: fructose 6-phosphate metabolic process	2.07E-03
56	GO:0009880: embryonic pattern specification	2.07E-03
57	GO:0007186: G-protein coupled receptor signaling pathway	2.07E-03
58	GO:0048366: leaf development	2.11E-03
59	GO:0009744: response to sucrose	2.21E-03
60	GO:0051707: response to other organism	2.21E-03
61	GO:0000209: protein polyubiquitination	2.30E-03
62	GO:0090333: regulation of stomatal closure	2.33E-03
63	GO:0009651: response to salt stress	2.36E-03
64	GO:0046777: protein autophosphorylation	2.45E-03
65	GO:0008202: steroid metabolic process	2.61E-03
66	GO:0051453: regulation of intracellular pH	2.61E-03
67	GO:0048268: clathrin coat assembly	2.61E-03
68	GO:0042761: very long-chain fatty acid biosynthetic process	2.61E-03
69	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.61E-03
70	GO:0016571: histone methylation	2.61E-03
71	GO:0006896: Golgi to vacuole transport	2.90E-03
72	GO:0009750: response to fructose	3.20E-03
73	GO:0043085: positive regulation of catalytic activity	3.20E-03
74	GO:0000266: mitochondrial fission	3.50E-03
75	GO:0012501: programmed cell death	3.50E-03
76	GO:0015706: nitrate transport	3.50E-03
77	GO:0009408: response to heat	3.68E-03
78	GO:0009737: response to abscisic acid	3.71E-03
79	GO:0055046: microgametogenesis	3.82E-03
80	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.82E-03
81	GO:0010102: lateral root morphogenesis	3.82E-03
82	GO:0006807: nitrogen compound metabolic process	3.82E-03
83	GO:0007034: vacuolar transport	4.15E-03
84	GO:0006396: RNA processing	4.33E-03
85	GO:0006979: response to oxidative stress	4.43E-03
86	GO:0010053: root epidermal cell differentiation	4.49E-03
87	GO:2000377: regulation of reactive oxygen species metabolic process	5.19E-03
88	GO:0016575: histone deacetylation	5.55E-03
89	GO:0009734: auxin-activated signaling pathway	5.68E-03
90	GO:0061077: chaperone-mediated protein folding	5.93E-03
91	GO:0015031: protein transport	6.30E-03
92	GO:0007005: mitochondrion organization	6.31E-03
93	GO:0009561: megagametogenesis	7.10E-03
94	GO:0010150: leaf senescence	7.24E-03
95	GO:0010087: phloem or xylem histogenesis	7.93E-03
96	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.10E-03
97	GO:0006470: protein dephosphorylation	8.28E-03
98	GO:0010197: polar nucleus fusion	8.35E-03
99	GO:0006814: sodium ion transport	8.79E-03
100	GO:0042752: regulation of circadian rhythm	8.79E-03
101	GO:0006623: protein targeting to vacuole	9.23E-03
102	GO:0009749: response to glucose	9.23E-03
103	GO:0006891: intra-Golgi vesicle-mediated transport	9.68E-03
104	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.68E-03
105	GO:0071554: cell wall organization or biogenesis	9.68E-03
106	GO:0002229: defense response to oomycetes	9.68E-03
107	GO:0009630: gravitropism	1.01E-02
108	GO:0007264: small GTPase mediated signal transduction	1.01E-02
109	GO:0010583: response to cyclopentenone	1.01E-02
110	GO:0016032: viral process	1.01E-02
111	GO:1901657: glycosyl compound metabolic process	1.06E-02
112	GO:0030163: protein catabolic process	1.06E-02
113	GO:0006511: ubiquitin-dependent protein catabolic process	1.12E-02
114	GO:0071805: potassium ion transmembrane transport	1.16E-02
115	GO:0007049: cell cycle	1.25E-02
116	GO:0009911: positive regulation of flower development	1.25E-02
117	GO:0009723: response to ethylene	1.30E-02
118	GO:0010029: regulation of seed germination	1.30E-02
119	GO:0009816: defense response to bacterium, incompatible interaction	1.30E-02
120	GO:0042128: nitrate assimilation	1.36E-02
121	GO:0006974: cellular response to DNA damage stimulus	1.36E-02
122	GO:0055114: oxidation-reduction process	1.40E-02
123	GO:0048573: photoperiodism, flowering	1.41E-02
124	GO:0006888: ER to Golgi vesicle-mediated transport	1.41E-02
125	GO:0048767: root hair elongation	1.57E-02
126	GO:0009407: toxin catabolic process	1.62E-02
127	GO:0010043: response to zinc ion	1.68E-02
128	GO:0007568: aging	1.68E-02
129	GO:0048527: lateral root development	1.68E-02
130	GO:0010119: regulation of stomatal movement	1.68E-02
131	GO:0042742: defense response to bacterium	1.86E-02
132	GO:0006897: endocytosis	2.02E-02
133	GO:0006631: fatty acid metabolic process	2.02E-02
134	GO:0042542: response to hydrogen peroxide	2.08E-02
135	GO:0048364: root development	2.15E-02
136	GO:0009733: response to auxin	2.16E-02
137	GO:0008152: metabolic process	2.27E-02
138	GO:0009644: response to high light intensity	2.27E-02
139	GO:0009636: response to toxic substance	2.33E-02
140	GO:0006508: proteolysis	2.37E-02
141	GO:0006855: drug transmembrane transport	2.39E-02
142	GO:0009809: lignin biosynthetic process	2.65E-02
143	GO:0009736: cytokinin-activated signaling pathway	2.65E-02
144	GO:0009873: ethylene-activated signaling pathway	2.66E-02
145	GO:0006857: oligopeptide transport	2.78E-02
146	GO:0006096: glycolytic process	2.99E-02
147	GO:0048367: shoot system development	3.05E-02
148	GO:0009626: plant-type hypersensitive response	3.12E-02
149	GO:0009735: response to cytokinin	3.34E-02
150	GO:0018105: peptidyl-serine phosphorylation	3.48E-02
151	GO:0051726: regulation of cell cycle	3.55E-02
152	GO:0006355: regulation of transcription, DNA-templated	3.99E-02
153	GO:0040008: regulation of growth	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0051723: protein methylesterase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0031593: polyubiquitin binding	2.15E-05
5	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.05E-05
6	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.05E-05
7	GO:0005515: protein binding	8.34E-05
8	GO:0036374: glutathione hydrolase activity	3.80E-04
9	GO:0016805: dipeptidase activity	3.80E-04
10	GO:0001664: G-protein coupled receptor binding	3.80E-04
11	GO:0080054: low-affinity nitrate transmembrane transporter activity	3.80E-04
12	GO:0005093: Rab GDP-dissociation inhibitor activity	3.80E-04
13	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	3.80E-04
14	GO:0016151: nickel cation binding	3.80E-04
15	GO:0005047: signal recognition particle binding	3.80E-04
16	GO:0031683: G-protein beta/gamma-subunit complex binding	3.80E-04
17	GO:0003840: gamma-glutamyltransferase activity	3.80E-04
18	GO:0001653: peptide receptor activity	5.46E-04
19	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	5.46E-04
20	GO:0003924: GTPase activity	6.36E-04
21	GO:0004301: epoxide hydrolase activity	7.26E-04
22	GO:0004197: cysteine-type endopeptidase activity	7.96E-04
23	GO:0005496: steroid binding	9.17E-04
24	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	9.17E-04
25	GO:0102391: decanoate--CoA ligase activity	1.34E-03
26	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.34E-03
27	GO:0004620: phospholipase activity	1.57E-03
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.57E-03
29	GO:0008235: metalloexopeptidase activity	1.57E-03
30	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.57E-03
31	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.57E-03
32	GO:0003872: 6-phosphofructokinase activity	1.57E-03
33	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.81E-03
34	GO:0052747: sinapyl alcohol dehydrogenase activity	1.81E-03
35	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.81E-03
36	GO:0008142: oxysterol binding	2.07E-03
37	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.07E-03
38	GO:0061630: ubiquitin protein ligase activity	2.40E-03
39	GO:0047617: acyl-CoA hydrolase activity	2.61E-03
40	GO:0045309: protein phosphorylated amino acid binding	2.61E-03
41	GO:0005545: 1-phosphatidylinositol binding	2.90E-03
42	GO:0005525: GTP binding	3.19E-03
43	GO:0004177: aminopeptidase activity	3.20E-03
44	GO:0015386: potassium:proton antiporter activity	3.20E-03
45	GO:0019904: protein domain specific binding	3.20E-03
46	GO:0008234: cysteine-type peptidase activity	3.28E-03
47	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.50E-03
48	GO:0031072: heat shock protein binding	3.82E-03
49	GO:0031624: ubiquitin conjugating enzyme binding	4.15E-03
50	GO:0004407: histone deacetylase activity	5.19E-03
51	GO:0005528: FK506 binding	5.19E-03
52	GO:0043424: protein histidine kinase binding	5.55E-03
53	GO:0035251: UDP-glucosyltransferase activity	5.93E-03
54	GO:0004298: threonine-type endopeptidase activity	5.93E-03
55	GO:0000166: nucleotide binding	7.61E-03
56	GO:0008194: UDP-glycosyltransferase activity	8.10E-03
57	GO:0030276: clathrin binding	8.35E-03
58	GO:0001085: RNA polymerase II transcription factor binding	8.35E-03
59	GO:0004872: receptor activity	9.23E-03
60	GO:0015385: sodium:proton antiporter activity	1.06E-02
61	GO:0046982: protein heterodimerization activity	1.10E-02
62	GO:0016413: O-acetyltransferase activity	1.20E-02
63	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.36E-02
64	GO:0016787: hydrolase activity	1.39E-02
65	GO:0004683: calmodulin-dependent protein kinase activity	1.41E-02
66	GO:0102483: scopolin beta-glucosidase activity	1.41E-02
67	GO:0005096: GTPase activator activity	1.57E-02
68	GO:0015238: drug transmembrane transporter activity	1.57E-02
69	GO:0030145: manganese ion binding	1.68E-02
70	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.68E-02
71	GO:0004722: protein serine/threonine phosphatase activity	1.83E-02
72	GO:0000149: SNARE binding	1.91E-02
73	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.91E-02
74	GO:0008422: beta-glucosidase activity	1.91E-02
75	GO:0004364: glutathione transferase activity	2.08E-02
76	GO:0005484: SNAP receptor activity	2.14E-02
77	GO:0015293: symporter activity	2.33E-02
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.39E-02
79	GO:0051287: NAD binding	2.46E-02
80	GO:0016491: oxidoreductase activity	2.63E-02
81	GO:0031625: ubiquitin protein ligase binding	2.85E-02
82	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.19E-02
83	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.19E-02
84	GO:0016887: ATPase activity	3.19E-02
85	GO:0051082: unfolded protein binding	3.41E-02
86	GO:0005524: ATP binding	3.88E-02
87	GO:0016758: transferase activity, transferring hexosyl groups	3.92E-02
88	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.38E-02
89	GO:0015144: carbohydrate transmembrane transporter activity	4.54E-02
90	GO:0008565: protein transporter activity	4.54E-02
91	GO:0004674: protein serine/threonine kinase activity	4.71E-02
92	GO:0015297: antiporter activity	4.86E-02
93	GO:0005351: sugar:proton symporter activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005829: cytosol	8.77E-09
4	GO:0005773: vacuole	1.40E-04
5	GO:0031902: late endosome membrane	1.91E-04
6	GO:0005764: lysosome	2.19E-04
7	GO:0030139: endocytic vesicle	3.80E-04
8	GO:0031461: cullin-RING ubiquitin ligase complex	5.46E-04
9	GO:0005945: 6-phosphofructokinase complex	9.17E-04
10	GO:0030529: intracellular ribonucleoprotein complex	1.06E-03
11	GO:0030904: retromer complex	1.12E-03
12	GO:0030140: trans-Golgi network transport vesicle	1.12E-03
13	GO:0005737: cytoplasm	1.32E-03
14	GO:0016363: nuclear matrix	1.34E-03
15	GO:0000151: ubiquitin ligase complex	1.37E-03
16	GO:0000794: condensed nuclear chromosome	1.57E-03
17	GO:0012507: ER to Golgi transport vesicle membrane	1.81E-03
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.07E-03
19	GO:0008540: proteasome regulatory particle, base subcomplex	2.61E-03
20	GO:0000502: proteasome complex	2.96E-03
21	GO:0005886: plasma membrane	2.99E-03
22	GO:0010008: endosome membrane	3.61E-03
23	GO:0016602: CCAAT-binding factor complex	3.82E-03
24	GO:0005623: cell	5.39E-03
25	GO:0009524: phragmoplast	5.53E-03
26	GO:0005741: mitochondrial outer membrane	5.93E-03
27	GO:0005905: clathrin-coated pit	5.93E-03
28	GO:0005839: proteasome core complex	5.93E-03
29	GO:0030136: clathrin-coated vesicle	7.51E-03
30	GO:0005615: extracellular space	8.10E-03
31	GO:0005770: late endosome	8.35E-03
32	GO:0005774: vacuolar membrane	8.65E-03
33	GO:0005777: peroxisome	9.07E-03
34	GO:0032580: Golgi cisterna membrane	1.11E-02
35	GO:0005778: peroxisomal membrane	1.16E-02
36	GO:0000932: P-body	1.25E-02
37	GO:0005667: transcription factor complex	1.36E-02
38	GO:0000325: plant-type vacuole	1.68E-02
39	GO:0000786: nucleosome	1.73E-02
40	GO:0005819: spindle	1.91E-02
41	GO:0031201: SNARE complex	2.02E-02
42	GO:0005856: cytoskeleton	2.33E-02
43	GO:0005794: Golgi apparatus	2.42E-02
44	GO:0005635: nuclear envelope	2.78E-02
45	GO:0005783: endoplasmic reticulum	2.87E-02
46	GO:0005834: heterotrimeric G-protein complex	3.12E-02