co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G40610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0019284: L-methionine salvage from S-adenosylmethionine	0.00E+00
5	GO:0015979: photosynthesis	6.06E-13
6	GO:0009735: response to cytokinin	8.63E-10
7	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.32E-06
8	GO:0006000: fructose metabolic process	4.89E-06
9	GO:0009773: photosynthetic electron transport in photosystem I	8.67E-06
10	GO:0006094: gluconeogenesis	1.38E-05
11	GO:0018298: protein-chromophore linkage	1.83E-05
12	GO:0015976: carbon utilization	2.11E-05
13	GO:0045727: positive regulation of translation	2.11E-05
14	GO:0009768: photosynthesis, light harvesting in photosystem I	3.48E-05
15	GO:0010114: response to red light	4.85E-05
16	GO:0042549: photosystem II stabilization	5.10E-05
17	GO:0046620: regulation of organ growth	1.23E-04
18	GO:0006002: fructose 6-phosphate metabolic process	1.53E-04
19	GO:0009657: plastid organization	1.53E-04
20	GO:0032544: plastid translation	1.53E-04
21	GO:0034337: RNA folding	1.64E-04
22	GO:0071370: cellular response to gibberellin stimulus	1.64E-04
23	GO:0000481: maturation of 5S rRNA	1.64E-04
24	GO:0015995: chlorophyll biosynthetic process	2.55E-04
25	GO:0043085: positive regulation of catalytic activity	3.08E-04
26	GO:0009750: response to fructose	3.08E-04
27	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.73E-04
28	GO:0034755: iron ion transmembrane transport	3.73E-04
29	GO:0005986: sucrose biosynthetic process	4.03E-04
30	GO:0010207: photosystem II assembly	4.55E-04
31	GO:0005985: sucrose metabolic process	5.09E-04
32	GO:0006013: mannose metabolic process	6.11E-04
33	GO:0006696: ergosterol biosynthetic process	6.11E-04
34	GO:1902476: chloride transmembrane transport	8.73E-04
35	GO:0051513: regulation of monopolar cell growth	8.73E-04
36	GO:2001141: regulation of RNA biosynthetic process	8.73E-04
37	GO:0042631: cellular response to water deprivation	1.13E-03
38	GO:0019676: ammonia assimilation cycle	1.16E-03
39	GO:0015994: chlorophyll metabolic process	1.16E-03
40	GO:2000122: negative regulation of stomatal complex development	1.16E-03
41	GO:2000038: regulation of stomatal complex development	1.16E-03
42	GO:0010037: response to carbon dioxide	1.16E-03
43	GO:0006542: glutamine biosynthetic process	1.16E-03
44	GO:0032876: negative regulation of DNA endoreduplication	1.47E-03
45	GO:0030308: negative regulation of cell growth	1.47E-03
46	GO:0045038: protein import into chloroplast thylakoid membrane	1.47E-03
47	GO:0006461: protein complex assembly	1.47E-03
48	GO:0000741: karyogamy	1.80E-03
49	GO:1902456: regulation of stomatal opening	1.80E-03
50	GO:2000037: regulation of stomatal complex patterning	2.17E-03
51	GO:0019509: L-methionine salvage from methylthioadenosine	2.17E-03
52	GO:0010019: chloroplast-nucleus signaling pathway	2.17E-03
53	GO:0007623: circadian rhythm	2.48E-03
54	GO:0009772: photosynthetic electron transport in photosystem II	2.55E-03
55	GO:0010196: nonphotochemical quenching	2.55E-03
56	GO:0050829: defense response to Gram-negative bacterium	2.55E-03
57	GO:0006821: chloride transport	2.55E-03
58	GO:0008610: lipid biosynthetic process	2.95E-03
59	GO:0009642: response to light intensity	2.95E-03
60	GO:0006402: mRNA catabolic process	2.95E-03
61	GO:0030091: protein repair	2.95E-03
62	GO:0009850: auxin metabolic process	2.95E-03
63	GO:0032508: DNA duplex unwinding	2.95E-03
64	GO:0010492: maintenance of shoot apical meristem identity	2.95E-03
65	GO:0010218: response to far red light	3.07E-03
66	GO:0010119: regulation of stomatal movement	3.21E-03
67	GO:0071482: cellular response to light stimulus	3.37E-03
68	GO:0009637: response to blue light	3.52E-03
69	GO:0042742: defense response to bacterium	3.58E-03
70	GO:0009051: pentose-phosphate shunt, oxidative branch	3.81E-03
71	GO:0048507: meristem development	3.81E-03
72	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.81E-03
73	GO:0010206: photosystem II repair	3.81E-03
74	GO:0009733: response to auxin	4.39E-03
75	GO:0009926: auxin polar transport	4.53E-03
76	GO:0009744: response to sucrose	4.53E-03
77	GO:0006949: syncytium formation	4.75E-03
78	GO:0009299: mRNA transcription	4.75E-03
79	GO:0048829: root cap development	4.75E-03
80	GO:0009644: response to high light intensity	4.90E-03
81	GO:0009698: phenylpropanoid metabolic process	5.25E-03
82	GO:0019684: photosynthesis, light reaction	5.25E-03
83	GO:0009089: lysine biosynthetic process via diaminopimelate	5.25E-03
84	GO:0006879: cellular iron ion homeostasis	5.25E-03
85	GO:0006352: DNA-templated transcription, initiation	5.25E-03
86	GO:0000272: polysaccharide catabolic process	5.25E-03
87	GO:0018119: peptidyl-cysteine S-nitrosylation	5.25E-03
88	GO:0009664: plant-type cell wall organization	5.68E-03
89	GO:0008361: regulation of cell size	5.77E-03
90	GO:0005983: starch catabolic process	5.77E-03
91	GO:0015706: nitrate transport	5.77E-03
92	GO:0009409: response to cold	6.08E-03
93	GO:0006364: rRNA processing	6.10E-03
94	GO:0009725: response to hormone	6.30E-03
95	GO:0006006: glucose metabolic process	6.30E-03
96	GO:2000028: regulation of photoperiodism, flowering	6.30E-03
97	GO:0019253: reductive pentose-phosphate cycle	6.85E-03
98	GO:0010167: response to nitrate	7.41E-03
99	GO:0009740: gibberellic acid mediated signaling pathway	8.18E-03
100	GO:0042545: cell wall modification	8.42E-03
101	GO:0005992: trehalose biosynthetic process	8.59E-03
102	GO:0003333: amino acid transmembrane transport	9.84E-03
103	GO:0019748: secondary metabolic process	1.05E-02
104	GO:0006284: base-excision repair	1.18E-02
105	GO:0016117: carotenoid biosynthetic process	1.25E-02
106	GO:0042335: cuticle development	1.32E-02
107	GO:0080022: primary root development	1.32E-02
108	GO:0000413: protein peptidyl-prolyl isomerization	1.32E-02
109	GO:0006979: response to oxidative stress	1.34E-02
110	GO:0006662: glycerol ether metabolic process	1.39E-02
111	GO:0010197: polar nucleus fusion	1.39E-02
112	GO:0040008: regulation of growth	1.44E-02
113	GO:0009734: auxin-activated signaling pathway	1.44E-02
114	GO:0045490: pectin catabolic process	1.51E-02
115	GO:0009749: response to glucose	1.54E-02
116	GO:0010193: response to ozone	1.62E-02
117	GO:0009739: response to gibberellin	1.69E-02
118	GO:0009630: gravitropism	1.70E-02
119	GO:0010090: trichome morphogenesis	1.77E-02
120	GO:0010468: regulation of gene expression	1.80E-02
121	GO:0009828: plant-type cell wall loosening	1.86E-02
122	GO:0009611: response to wounding	1.98E-02
123	GO:0009826: unidimensional cell growth	2.25E-02
124	GO:0042128: nitrate assimilation	2.27E-02
125	GO:0009658: chloroplast organization	2.33E-02
126	GO:0006810: transport	2.36E-02
127	GO:0016311: dephosphorylation	2.45E-02
128	GO:0009817: defense response to fungus, incompatible interaction	2.54E-02
129	GO:0009407: toxin catabolic process	2.72E-02
130	GO:0007568: aging	2.82E-02
131	GO:0006865: amino acid transport	2.91E-02
132	GO:0034599: cellular response to oxidative stress	3.10E-02
133	GO:0045892: negative regulation of transcription, DNA-templated	3.52E-02
134	GO:0009636: response to toxic substance	3.91E-02
135	GO:0006855: drug transmembrane transport	4.02E-02
136	GO:0032259: methylation	4.08E-02
137	GO:0010224: response to UV-B	4.56E-02
138	GO:0006417: regulation of translation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0046570: methylthioribulose 1-phosphate dehydratase activity	0.00E+00
6	GO:0043874: acireductone synthase activity	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.32E-06
9	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.32E-06
10	GO:0016168: chlorophyll binding	1.18E-05
11	GO:0031409: pigment binding	2.49E-05
12	GO:0046906: tetrapyrrole binding	1.64E-04
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.64E-04
14	GO:0009671: nitrate:proton symporter activity	1.64E-04
15	GO:0051996: squalene synthase activity	1.64E-04
16	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.64E-04
17	GO:0010297: heteropolysaccharide binding	3.73E-04
18	GO:0043425: bHLH transcription factor binding	3.73E-04
19	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	3.73E-04
20	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.73E-04
21	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.73E-04
22	GO:0047746: chlorophyllase activity	3.73E-04
23	GO:0004089: carbonate dehydratase activity	4.03E-04
24	GO:0051537: 2 iron, 2 sulfur cluster binding	6.11E-04
25	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.11E-04
26	GO:0090729: toxin activity	6.11E-04
27	GO:0005528: FK506 binding	6.27E-04
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.72E-04
29	GO:0001053: plastid sigma factor activity	1.16E-03
30	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.16E-03
31	GO:0016987: sigma factor activity	1.16E-03
32	GO:0010328: auxin influx transmembrane transporter activity	1.16E-03
33	GO:0005253: anion channel activity	1.16E-03
34	GO:0050662: coenzyme binding	1.30E-03
35	GO:0008725: DNA-3-methyladenine glycosylase activity	1.47E-03
36	GO:0004356: glutamate-ammonia ligase activity	1.47E-03
37	GO:0019843: rRNA binding	1.65E-03
38	GO:0004332: fructose-bisphosphate aldolase activity	1.80E-03
39	GO:0005247: voltage-gated chloride channel activity	1.80E-03
40	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.17E-03
41	GO:0016832: aldehyde-lyase activity	2.17E-03
42	GO:0004602: glutathione peroxidase activity	2.17E-03
43	GO:0004559: alpha-mannosidase activity	2.17E-03
44	GO:0019899: enzyme binding	2.55E-03
45	GO:0004564: beta-fructofuranosidase activity	2.95E-03
46	GO:0004575: sucrose alpha-glucosidase activity	4.27E-03
47	GO:0005381: iron ion transmembrane transporter activity	4.27E-03
48	GO:0015112: nitrate transmembrane transporter activity	4.27E-03
49	GO:0004185: serine-type carboxypeptidase activity	4.53E-03
50	GO:0008047: enzyme activator activity	4.75E-03
51	GO:0004805: trehalose-phosphatase activity	4.75E-03
52	GO:0004565: beta-galactosidase activity	6.30E-03
53	GO:0031072: heat shock protein binding	6.30E-03
54	GO:0045330: aspartyl esterase activity	6.75E-03
55	GO:0008266: poly(U) RNA binding	6.85E-03
56	GO:0008146: sulfotransferase activity	7.41E-03
57	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	7.44E-03
58	GO:0030599: pectinesterase activity	8.18E-03
59	GO:0004707: MAP kinase activity	9.84E-03
60	GO:0004176: ATP-dependent peptidase activity	9.84E-03
61	GO:0022891: substrate-specific transmembrane transporter activity	1.11E-02
62	GO:0003756: protein disulfide isomerase activity	1.18E-02
63	GO:0003727: single-stranded RNA binding	1.18E-02
64	GO:0047134: protein-disulfide reductase activity	1.25E-02
65	GO:0004791: thioredoxin-disulfide reductase activity	1.47E-02
66	GO:0004518: nuclease activity	1.70E-02
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.77E-02
68	GO:0016597: amino acid binding	2.02E-02
69	GO:0005096: GTPase activator activity	2.63E-02
70	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.82E-02
71	GO:0003993: acid phosphatase activity	3.10E-02
72	GO:0050661: NADP binding	3.30E-02
73	GO:0004364: glutathione transferase activity	3.50E-02
74	GO:0043621: protein self-association	3.81E-02
75	GO:0015293: symporter activity	3.91E-02
76	GO:0016787: hydrolase activity	4.09E-02
77	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.45E-02
78	GO:0009055: electron carrier activity	4.56E-02
79	GO:0015171: amino acid transmembrane transporter activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	3.00E-30
4	GO:0009507: chloroplast	6.81E-23
5	GO:0009534: chloroplast thylakoid	1.09E-22
6	GO:0009941: chloroplast envelope	2.66E-18
7	GO:0009570: chloroplast stroma	1.53E-13
8	GO:0009579: thylakoid	6.82E-13
9	GO:0009543: chloroplast thylakoid lumen	5.12E-11
10	GO:0010287: plastoglobule	1.35E-09
11	GO:0009523: photosystem II	8.64E-08
12	GO:0030095: chloroplast photosystem II	2.72E-07
13	GO:0010319: stromule	8.16E-06
14	GO:0031977: thylakoid lumen	4.15E-05
15	GO:0009522: photosystem I	9.80E-05
16	GO:0009538: photosystem I reaction center	1.23E-04
17	GO:0009783: photosystem II antenna complex	1.64E-04
18	GO:0031969: chloroplast membrane	1.78E-04
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.87E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.73E-04
21	GO:0080085: signal recognition particle, chloroplast targeting	3.73E-04
22	GO:0009654: photosystem II oxygen evolving complex	6.90E-04
23	GO:0009531: secondary cell wall	8.73E-04
24	GO:0005775: vacuolar lumen	8.73E-04
25	GO:0048046: apoplast	1.30E-03
26	GO:0019898: extrinsic component of membrane	1.40E-03
27	GO:0009505: plant-type cell wall	1.45E-03
28	GO:0034707: chloride channel complex	1.80E-03
29	GO:0009533: chloroplast stromal thylakoid	2.55E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.37E-03
31	GO:0042644: chloroplast nucleoid	3.81E-03
32	GO:0008180: COP9 signalosome	3.81E-03
33	GO:0005763: mitochondrial small ribosomal subunit	3.81E-03
34	GO:0005618: cell wall	4.80E-03
35	GO:0032040: small-subunit processome	5.77E-03
36	GO:0009508: plastid chromosome	6.30E-03
37	GO:0000312: plastid small ribosomal subunit	6.85E-03
38	GO:0030076: light-harvesting complex	7.41E-03
39	GO:0009706: chloroplast inner membrane	8.68E-03
40	GO:0042651: thylakoid membrane	9.21E-03
41	GO:0005623: cell	1.12E-02
42	GO:0016020: membrane	1.24E-02
43	GO:0071944: cell periphery	1.77E-02
44	GO:0009295: nucleoid	1.94E-02
45	GO:0030529: intracellular ribonucleoprotein complex	2.10E-02
46	GO:0005773: vacuole	2.41E-02
47	GO:0019005: SCF ubiquitin ligase complex	2.54E-02
48	GO:0000325: plant-type vacuole	2.82E-02
49	GO:0015934: large ribosomal subunit	2.82E-02
50	GO:0031902: late endosome membrane	3.40E-02
51	GO:0000502: proteasome complex	4.45E-02
52	GO:0043231: intracellular membrane-bounded organelle	4.69E-02
53	GO:0005840: ribosome	4.89E-02