GO Enrichment Analysis of Co-expressed Genes with
AT2G39990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045047: protein targeting to ER | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:0031564: transcription antitermination | 0.00E+00 |
| 4 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 5 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 6 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 7 | GO:0019307: mannose biosynthetic process | 0.00E+00 |
| 8 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 9 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 10 | GO:0042254: ribosome biogenesis | 4.02E-07 |
| 11 | GO:1990258: histone glutamine methylation | 2.88E-05 |
| 12 | GO:0080120: CAAX-box protein maturation | 2.88E-05 |
| 13 | GO:0071586: CAAX-box protein processing | 2.88E-05 |
| 14 | GO:0000494: box C/D snoRNA 3'-end processing | 2.88E-05 |
| 15 | GO:0006364: rRNA processing | 3.23E-05 |
| 16 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.28E-05 |
| 17 | GO:0015865: purine nucleotide transport | 7.28E-05 |
| 18 | GO:0045041: protein import into mitochondrial intermembrane space | 7.28E-05 |
| 19 | GO:0007005: mitochondrion organization | 7.80E-05 |
| 20 | GO:0046686: response to cadmium ion | 1.11E-04 |
| 21 | GO:0006013: mannose metabolic process | 1.27E-04 |
| 22 | GO:1902626: assembly of large subunit precursor of preribosome | 1.27E-04 |
| 23 | GO:0045039: protein import into mitochondrial inner membrane | 1.27E-04 |
| 24 | GO:0046902: regulation of mitochondrial membrane permeability | 1.89E-04 |
| 25 | GO:0007276: gamete generation | 1.89E-04 |
| 26 | GO:0051131: chaperone-mediated protein complex assembly | 1.89E-04 |
| 27 | GO:0009298: GDP-mannose biosynthetic process | 1.89E-04 |
| 28 | GO:0006412: translation | 2.14E-04 |
| 29 | GO:0031167: rRNA methylation | 3.30E-04 |
| 30 | GO:0018279: protein N-linked glycosylation via asparagine | 3.30E-04 |
| 31 | GO:0042026: protein refolding | 4.86E-04 |
| 32 | GO:0009423: chorismate biosynthetic process | 4.86E-04 |
| 33 | GO:0006458: 'de novo' protein folding | 4.86E-04 |
| 34 | GO:0016444: somatic cell DNA recombination | 4.86E-04 |
| 35 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 5.68E-04 |
| 36 | GO:0006400: tRNA modification | 5.68E-04 |
| 37 | GO:0042255: ribosome assembly | 6.55E-04 |
| 38 | GO:0006605: protein targeting | 6.55E-04 |
| 39 | GO:0001510: RNA methylation | 7.44E-04 |
| 40 | GO:0098656: anion transmembrane transport | 8.35E-04 |
| 41 | GO:0009073: aromatic amino acid family biosynthetic process | 1.13E-03 |
| 42 | GO:0006820: anion transport | 1.23E-03 |
| 43 | GO:0010588: cotyledon vascular tissue pattern formation | 1.34E-03 |
| 44 | GO:0006626: protein targeting to mitochondrion | 1.34E-03 |
| 45 | GO:0048467: gynoecium development | 1.45E-03 |
| 46 | GO:0019853: L-ascorbic acid biosynthetic process | 1.56E-03 |
| 47 | GO:0000027: ribosomal large subunit assembly | 1.79E-03 |
| 48 | GO:0006487: protein N-linked glycosylation | 1.79E-03 |
| 49 | GO:0051302: regulation of cell division | 1.92E-03 |
| 50 | GO:0061077: chaperone-mediated protein folding | 2.04E-03 |
| 51 | GO:0006334: nucleosome assembly | 2.04E-03 |
| 52 | GO:0008033: tRNA processing | 2.70E-03 |
| 53 | GO:0000413: protein peptidyl-prolyl isomerization | 2.70E-03 |
| 54 | GO:0010305: leaf vascular tissue pattern formation | 2.84E-03 |
| 55 | GO:0006635: fatty acid beta-oxidation | 3.28E-03 |
| 56 | GO:0016049: cell growth | 4.88E-03 |
| 57 | GO:0010311: lateral root formation | 5.22E-03 |
| 58 | GO:0009631: cold acclimation | 5.58E-03 |
| 59 | GO:0048527: lateral root development | 5.58E-03 |
| 60 | GO:0010043: response to zinc ion | 5.58E-03 |
| 61 | GO:0000724: double-strand break repair via homologous recombination | 5.76E-03 |
| 62 | GO:0008283: cell proliferation | 7.08E-03 |
| 63 | GO:0009664: plant-type cell wall organization | 8.29E-03 |
| 64 | GO:0048367: shoot system development | 1.00E-02 |
| 65 | GO:0006414: translational elongation | 1.12E-02 |
| 66 | GO:0009651: response to salt stress | 1.15E-02 |
| 67 | GO:0009845: seed germination | 1.38E-02 |
| 68 | GO:0006633: fatty acid biosynthetic process | 1.54E-02 |
| 69 | GO:0009617: response to bacterium | 1.86E-02 |
| 70 | GO:0009826: unidimensional cell growth | 2.18E-02 |
| 71 | GO:0006970: response to osmotic stress | 2.36E-02 |
| 72 | GO:0009723: response to ethylene | 2.48E-02 |
| 73 | GO:0048366: leaf development | 2.52E-02 |
| 74 | GO:0006886: intracellular protein transport | 3.04E-02 |
| 75 | GO:0032259: methylation | 3.34E-02 |
| 76 | GO:0009408: response to heat | 3.45E-02 |
| 77 | GO:0009793: embryo development ending in seed dormancy | 3.53E-02 |
| 78 | GO:0048364: root development | 3.55E-02 |
| 79 | GO:0009734: auxin-activated signaling pathway | 4.40E-02 |
| 80 | GO:0006508: proteolysis | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 2 | GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | 0.00E+00 |
| 3 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 4 | GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity | 0.00E+00 |
| 5 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 6 | GO:0004615: phosphomannomutase activity | 0.00E+00 |
| 7 | GO:0030515: snoRNA binding | 5.90E-06 |
| 8 | GO:0003746: translation elongation factor activity | 1.31E-05 |
| 9 | GO:0005507: copper ion binding | 1.90E-05 |
| 10 | GO:0003735: structural constituent of ribosome | 1.99E-05 |
| 11 | GO:1990259: histone-glutamine methyltransferase activity | 2.88E-05 |
| 12 | GO:0042134: rRNA primary transcript binding | 2.88E-05 |
| 13 | GO:0043021: ribonucleoprotein complex binding | 7.28E-05 |
| 14 | GO:0008649: rRNA methyltransferase activity | 1.27E-04 |
| 15 | GO:0070180: large ribosomal subunit rRNA binding | 1.27E-04 |
| 16 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 3.30E-04 |
| 17 | GO:0005471: ATP:ADP antiporter activity | 3.30E-04 |
| 18 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 4.06E-04 |
| 19 | GO:0003723: RNA binding | 5.02E-04 |
| 20 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 5.68E-04 |
| 21 | GO:0015288: porin activity | 6.55E-04 |
| 22 | GO:0008308: voltage-gated anion channel activity | 7.44E-04 |
| 23 | GO:0044183: protein binding involved in protein folding | 1.13E-03 |
| 24 | GO:0004175: endopeptidase activity | 1.45E-03 |
| 25 | GO:0010181: FMN binding | 2.99E-03 |
| 26 | GO:0003924: GTPase activity | 4.25E-03 |
| 27 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.05E-03 |
| 28 | GO:0004222: metalloendopeptidase activity | 5.40E-03 |
| 29 | GO:0050897: cobalt ion binding | 5.58E-03 |
| 30 | GO:0003697: single-stranded DNA binding | 5.94E-03 |
| 31 | GO:0042393: histone binding | 6.50E-03 |
| 32 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.88E-03 |
| 33 | GO:0051287: NAD binding | 8.09E-03 |
| 34 | GO:0003690: double-stranded DNA binding | 8.92E-03 |
| 35 | GO:0051082: unfolded protein binding | 1.12E-02 |
| 36 | GO:0008565: protein transporter activity | 1.48E-02 |
| 37 | GO:0003676: nucleic acid binding | 1.49E-02 |
| 38 | GO:0008168: methyltransferase activity | 2.18E-02 |
| 39 | GO:0003729: mRNA binding | 2.27E-02 |
| 40 | GO:0003682: chromatin binding | 2.33E-02 |
| 41 | GO:0008233: peptidase activity | 2.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 6.26E-14 |
| 4 | GO:0005773: vacuole | 1.66E-08 |
| 5 | GO:0005774: vacuolar membrane | 8.82E-06 |
| 6 | GO:0015030: Cajal body | 1.62E-05 |
| 7 | GO:0032040: small-subunit processome | 2.80E-05 |
| 8 | GO:0005747: mitochondrial respiratory chain complex I | 4.41E-05 |
| 9 | GO:0005840: ribosome | 4.74E-05 |
| 10 | GO:0005739: mitochondrion | 7.14E-05 |
| 11 | GO:0070545: PeBoW complex | 7.28E-05 |
| 12 | GO:0022625: cytosolic large ribosomal subunit | 3.29E-04 |
| 13 | GO:0008250: oligosaccharyltransferase complex | 3.30E-04 |
| 14 | GO:0031428: box C/D snoRNP complex | 4.06E-04 |
| 15 | GO:0016363: nuclear matrix | 4.86E-04 |
| 16 | GO:0009536: plastid | 5.33E-04 |
| 17 | GO:0030687: preribosome, large subunit precursor | 5.68E-04 |
| 18 | GO:0046930: pore complex | 7.44E-04 |
| 19 | GO:0005740: mitochondrial envelope | 1.03E-03 |
| 20 | GO:0019013: viral nucleocapsid | 1.34E-03 |
| 21 | GO:0005750: mitochondrial respiratory chain complex III | 1.45E-03 |
| 22 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.56E-03 |
| 23 | GO:0005758: mitochondrial intermembrane space | 1.79E-03 |
| 24 | GO:0005741: mitochondrial outer membrane | 2.04E-03 |
| 25 | GO:0005829: cytosol | 3.23E-03 |
| 26 | GO:0005743: mitochondrial inner membrane | 3.95E-03 |
| 27 | GO:0015934: large ribosomal subunit | 5.58E-03 |
| 28 | GO:0022626: cytosolic ribosome | 7.19E-03 |
| 29 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.19E-02 |
| 30 | GO:0005623: cell | 1.33E-02 |
| 31 | GO:0005618: cell wall | 1.43E-02 |
| 32 | GO:0005759: mitochondrial matrix | 1.54E-02 |
| 33 | GO:0009941: chloroplast envelope | 1.77E-02 |
| 34 | GO:0009507: chloroplast | 1.85E-02 |
| 35 | GO:0009505: plant-type cell wall | 1.91E-02 |
| 36 | GO:0022627: cytosolic small ribosomal subunit | 2.00E-02 |
| 37 | GO:0005737: cytoplasm | 4.60E-02 |