Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016049: cell growth1.60E-07
2GO:0048358: mucilage pectin biosynthetic process4.83E-06
3GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic4.83E-06
4GO:0010393: galacturonan metabolic process4.83E-06
5GO:0048208: COPII vesicle coating4.83E-06
6GO:0034728: nucleosome organization4.83E-06
7GO:1900036: positive regulation of cellular response to heat4.83E-06
8GO:0061014: positive regulation of mRNA catabolic process4.83E-06
9GO:0016584: nucleosome positioning1.33E-05
10GO:0071217: cellular response to external biotic stimulus1.33E-05
11GO:0046898: response to cycloheximide1.33E-05
12GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.46E-05
13GO:0043044: ATP-dependent chromatin remodeling2.46E-05
14GO:0010272: response to silver ion2.46E-05
15GO:0010587: miRNA catabolic process3.83E-05
16GO:0080119: ER body organization3.83E-05
17GO:0080001: mucilage extrusion from seed coat3.83E-05
18GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA5.40E-05
19GO:0007029: endoplasmic reticulum organization7.14E-05
20GO:1902183: regulation of shoot apical meristem development7.14E-05
21GO:0032876: negative regulation of DNA endoreduplication7.14E-05
22GO:0048359: mucilage metabolic process involved in seed coat development7.14E-05
23GO:0047484: regulation of response to osmotic stress9.04E-05
24GO:0048232: male gamete generation9.04E-05
25GO:1901001: negative regulation of response to salt stress1.11E-04
26GO:0070370: cellular heat acclimation1.32E-04
27GO:1902074: response to salt1.32E-04
28GO:0006401: RNA catabolic process1.32E-04
29GO:0045995: regulation of embryonic development1.32E-04
30GO:0006402: mRNA catabolic process1.54E-04
31GO:0040029: regulation of gene expression, epigenetic1.54E-04
32GO:0009827: plant-type cell wall modification1.78E-04
33GO:2000024: regulation of leaf development2.02E-04
34GO:0010192: mucilage biosynthetic process2.53E-04
35GO:0008361: regulation of cell size3.06E-04
36GO:0009723: response to ethylene3.31E-04
37GO:0007030: Golgi organization3.90E-04
38GO:0009944: polarity specification of adaxial/abaxial axis4.48E-04
39GO:0010073: meristem maintenance4.78E-04
40GO:0001944: vasculature development5.71E-04
41GO:0009561: megagametogenesis6.03E-04
42GO:0048510: regulation of timing of transition from vegetative to reproductive phase8.02E-04
43GO:0002229: defense response to oomycetes8.02E-04
44GO:0009908: flower development8.13E-04
45GO:0009630: gravitropism8.37E-04
46GO:0010286: heat acclimation9.42E-04
47GO:0001666: response to hypoxia1.01E-03
48GO:0006974: cellular response to DNA damage stimulus1.09E-03
49GO:0006888: ER to Golgi vesicle-mediated transport1.13E-03
50GO:0008219: cell death1.20E-03
51GO:0009733: response to auxin1.97E-03
52GO:0006364: rRNA processing2.02E-03
53GO:0009909: regulation of flower development2.17E-03
54GO:0009620: response to fungus2.41E-03
55GO:0016569: covalent chromatin modification2.46E-03
56GO:0009553: embryo sac development2.51E-03
57GO:0009624: response to nematode2.56E-03
58GO:0009742: brassinosteroid mediated signaling pathway2.66E-03
59GO:0000398: mRNA splicing, via spliceosome2.82E-03
60GO:0009790: embryo development3.31E-03
61GO:0010228: vegetative to reproductive phase transition of meristem3.82E-03
62GO:0007166: cell surface receptor signaling pathway4.06E-03
63GO:0008380: RNA splicing4.18E-03
64GO:0009617: response to bacterium4.18E-03
65GO:0009826: unidimensional cell growth4.86E-03
66GO:0006970: response to osmotic stress5.25E-03
67GO:0045892: negative regulation of transcription, DNA-templated6.62E-03
68GO:0006886: intracellular protein transport6.69E-03
69GO:0006397: mRNA processing7.80E-03
70GO:0009873: ethylene-activated signaling pathway9.06E-03
71GO:0009416: response to light stimulus1.13E-02
72GO:0009611: response to wounding1.15E-02
73GO:0051301: cell division1.20E-02
74GO:0045893: positive regulation of transcription, DNA-templated1.25E-02
75GO:0006414: translational elongation1.50E-02
76GO:0009414: response to water deprivation1.84E-02
77GO:0042742: defense response to bacterium1.87E-02
78GO:0006979: response to oxidative stress1.88E-02
79GO:0030154: cell differentiation1.99E-02
80GO:0015031: protein transport2.22E-02
81GO:0006810: transport2.46E-02
82GO:0009737: response to abscisic acid3.21E-02
83GO:0050832: defense response to fungus4.07E-02
RankGO TermAdjusted P value
1GO:0045131: pre-mRNA branch point binding0.00E+00
2GO:0004534: 5'-3' exoribonuclease activity1.33E-05
3GO:0008409: 5'-3' exonuclease activity5.40E-05
4GO:0031491: nucleosome binding1.11E-04
5GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides1.11E-04
6GO:0004714: transmembrane receptor protein tyrosine kinase activity1.54E-04
7GO:0000175: 3'-5'-exoribonuclease activity3.33E-04
8GO:0008094: DNA-dependent ATPase activity5.09E-04
9GO:0033612: receptor serine/threonine kinase binding5.09E-04
10GO:0004540: ribonuclease activity5.09E-04
11GO:0004527: exonuclease activity7.00E-04
12GO:0003713: transcription coactivator activity7.00E-04
13GO:0005515: protein binding8.71E-04
14GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.42E-04
15GO:0003746: translation elongation factor activity1.40E-03
16GO:0004386: helicase activity2.71E-03
17GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.53E-03
18GO:0046982: protein heterodimerization activity4.92E-03
19GO:0004519: endonuclease activity8.04E-03
20GO:0004674: protein serine/threonine kinase activity8.49E-03
21GO:0008270: zinc ion binding8.94E-03
22GO:0000166: nucleotide binding1.13E-02
23GO:0005215: transporter activity2.01E-02
24GO:0004672: protein kinase activity2.46E-02
25GO:0003729: mRNA binding2.48E-02
26GO:0016301: kinase activity2.92E-02
27GO:0005524: ATP binding4.05E-02
RankGO TermAdjusted P value
1GO:0005844: polysome5.40E-05
2GO:0000178: exosome (RNase complex)7.14E-05
3GO:0030127: COPII vesicle coat9.04E-05
4GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.32E-04
5GO:0010494: cytoplasmic stress granule2.02E-04
6GO:0005795: Golgi stack3.90E-04
7GO:0043234: protein complex4.19E-04
8GO:0000932: P-body1.01E-03
9GO:0010008: endosome membrane2.31E-03
10GO:0005768: endosome1.73E-02
11GO:0000139: Golgi membrane2.32E-02
12GO:0005789: endoplasmic reticulum membrane2.53E-02
13GO:0005634: nucleus3.47E-02
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Gene type



Gene DE type