Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:0009967: positive regulation of signal transduction0.00E+00
3GO:0006412: translation2.38E-132
4GO:0042254: ribosome biogenesis1.09E-45
5GO:0000027: ribosomal large subunit assembly2.71E-13
6GO:0009955: adaxial/abaxial pattern specification4.84E-07
7GO:0002181: cytoplasmic translation3.72E-06
8GO:0009735: response to cytokinin1.32E-05
9GO:0071215: cellular response to abscisic acid stimulus3.89E-05
10GO:0006407: rRNA export from nucleus1.42E-04
11GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.42E-04
12GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.42E-04
13GO:0048569: post-embryonic animal organ development3.25E-04
14GO:0009965: leaf morphogenesis4.93E-04
15GO:1902626: assembly of large subunit precursor of preribosome5.33E-04
16GO:0010476: gibberellin mediated signaling pathway5.33E-04
17GO:0042256: mature ribosome assembly5.33E-04
18GO:0070301: cellular response to hydrogen peroxide7.63E-04
19GO:0006241: CTP biosynthetic process7.63E-04
20GO:0006165: nucleoside diphosphate phosphorylation7.63E-04
21GO:0006228: UTP biosynthetic process7.63E-04
22GO:0044205: 'de novo' UMP biosynthetic process1.01E-03
23GO:0042274: ribosomal small subunit biogenesis1.01E-03
24GO:0006183: GTP biosynthetic process1.01E-03
25GO:0071493: cellular response to UV-B1.28E-03
26GO:0009845: seed germination1.40E-03
27GO:0006414: translational elongation1.44E-03
28GO:0000470: maturation of LSU-rRNA1.57E-03
29GO:0000911: cytokinesis by cell plate formation1.88E-03
30GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process2.21E-03
31GO:0000028: ribosomal small subunit assembly2.56E-03
32GO:0001558: regulation of cell growth2.93E-03
33GO:0006526: arginine biosynthetic process2.93E-03
34GO:0009793: embryo development ending in seed dormancy3.21E-03
35GO:0008283: cell proliferation3.68E-03
36GO:0010015: root morphogenesis4.55E-03
37GO:0006913: nucleocytoplasmic transport4.55E-03
38GO:0006364: rRNA processing4.95E-03
39GO:0010229: inflorescence development5.45E-03
40GO:0010102: lateral root morphogenesis5.45E-03
41GO:0006417: regulation of translation5.48E-03
42GO:0006541: glutamine metabolic process5.92E-03
43GO:0048367: shoot system development6.04E-03
44GO:0051302: regulation of cell division7.95E-03
45GO:0040007: growth9.62E-03
46GO:0009749: response to glucose1.33E-02
47GO:0009791: post-embryonic development1.33E-02
48GO:0032502: developmental process1.46E-02
49GO:0009409: response to cold1.53E-02
50GO:0010090: trichome morphogenesis1.53E-02
51GO:0009644: response to high light intensity3.28E-02
52GO:0048364: root development3.61E-02
53GO:0009620: response to fungus4.62E-02
RankGO TermAdjusted P value
1GO:0005078: MAP-kinase scaffold activity0.00E+00
2GO:0003735: structural constituent of ribosome5.02E-165
3GO:0003729: mRNA binding2.19E-34
4GO:0019843: rRNA binding4.66E-13
5GO:0008097: 5S rRNA binding8.70E-06
6GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity1.42E-04
7GO:0032947: protein complex scaffold5.33E-04
8GO:0070181: small ribosomal subunit rRNA binding5.33E-04
9GO:0004550: nucleoside diphosphate kinase activity7.63E-04
10GO:0008235: metalloexopeptidase activity2.21E-03
11GO:0003723: RNA binding4.80E-03
12GO:0004871: signal transducer activity5.78E-03
13GO:0000166: nucleotide binding1.47E-02
14GO:0003746: translation elongation factor activity2.59E-02
RankGO TermAdjusted P value
1GO:0022626: cytosolic ribosome7.38E-124
2GO:0022625: cytosolic large ribosomal subunit7.89E-99
3GO:0005840: ribosome3.16E-97
4GO:0022627: cytosolic small ribosomal subunit2.22E-62
5GO:0005730: nucleolus1.42E-41
6GO:0005737: cytoplasm2.22E-41
7GO:0005829: cytosol1.96E-36
8GO:0009506: plasmodesma5.45E-29
9GO:0015934: large ribosomal subunit5.83E-22
10GO:0016020: membrane5.95E-20
11GO:0005774: vacuolar membrane2.97E-17
12GO:0005773: vacuole3.12E-13
13GO:0015935: small ribosomal subunit6.18E-13
14GO:0005618: cell wall4.08E-10
15GO:0005886: plasma membrane3.81E-09
16GO:0009507: chloroplast1.91E-06
17GO:0005951: carbamoyl-phosphate synthase complex1.42E-04
18GO:0030686: 90S preribosome1.42E-04
19GO:0005853: eukaryotic translation elongation factor 1 complex5.33E-04
20GO:0005742: mitochondrial outer membrane translocase complex2.93E-03
21GO:0005834: heterotrimeric G-protein complex6.23E-03
22GO:0030529: intracellular ribonucleoprotein complex1.81E-02
23GO:0005622: intracellular3.04E-02
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Gene type



Gene DE type