co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
2	GO:0042820: vitamin B6 catabolic process	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:1905499: trichome papilla formation	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0006642: triglyceride mobilization	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0031365: N-terminal protein amino acid modification	3.28E-05
10	GO:0007017: microtubule-based process	3.28E-05
11	GO:0006869: lipid transport	3.75E-05
12	GO:0042335: cuticle development	7.41E-05
13	GO:0010196: nonphotochemical quenching	9.14E-05
14	GO:0043686: co-translational protein modification	1.60E-04
15	GO:1902458: positive regulation of stomatal opening	1.60E-04
16	GO:0005980: glycogen catabolic process	1.60E-04
17	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.60E-04
18	GO:0009443: pyridoxal 5'-phosphate salvage	1.60E-04
19	GO:0010027: thylakoid membrane organization	1.94E-04
20	GO:0010411: xyloglucan metabolic process	2.43E-04
21	GO:0006633: fatty acid biosynthetic process	3.20E-04
22	GO:0071258: cellular response to gravity	3.65E-04
23	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.65E-04
24	GO:0010207: photosystem II assembly	4.38E-04
25	GO:0042546: cell wall biogenesis	5.55E-04
26	GO:0090391: granum assembly	5.97E-04
27	GO:0019563: glycerol catabolic process	5.97E-04
28	GO:1901562: response to paraquat	5.97E-04
29	GO:0032504: multicellular organism reproduction	5.97E-04
30	GO:0090506: axillary shoot meristem initiation	5.97E-04
31	GO:0009658: chloroplast organization	7.28E-04
32	GO:0006424: glutamyl-tRNA aminoacylation	8.53E-04
33	GO:0050482: arachidonic acid secretion	8.53E-04
34	GO:0009102: biotin biosynthetic process	8.53E-04
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.53E-04
36	GO:0009650: UV protection	8.53E-04
37	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.67E-04
38	GO:0019722: calcium-mediated signaling	9.39E-04
39	GO:0080022: primary root development	1.09E-03
40	GO:0000413: protein peptidyl-prolyl isomerization	1.09E-03
41	GO:0010037: response to carbon dioxide	1.13E-03
42	GO:0015976: carbon utilization	1.13E-03
43	GO:0009765: photosynthesis, light harvesting	1.13E-03
44	GO:2000122: negative regulation of stomatal complex development	1.13E-03
45	GO:0032543: mitochondrial translation	1.43E-03
46	GO:0045038: protein import into chloroplast thylakoid membrane	1.43E-03
47	GO:0016123: xanthophyll biosynthetic process	1.43E-03
48	GO:0006665: sphingolipid metabolic process	1.43E-03
49	GO:0016120: carotene biosynthetic process	1.43E-03
50	GO:0009828: plant-type cell wall loosening	1.74E-03
51	GO:0006014: D-ribose metabolic process	1.76E-03
52	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.76E-03
53	GO:0007267: cell-cell signaling	1.84E-03
54	GO:0009612: response to mechanical stimulus	2.11E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	2.11E-03
56	GO:0010555: response to mannitol	2.11E-03
57	GO:0071470: cellular response to osmotic stress	2.11E-03
58	GO:0010067: procambium histogenesis	2.11E-03
59	GO:0042128: nitrate assimilation	2.30E-03
60	GO:0009645: response to low light intensity stimulus	2.48E-03
61	GO:0007050: cell cycle arrest	2.48E-03
62	GO:0006508: proteolysis	2.54E-03
63	GO:2000070: regulation of response to water deprivation	2.88E-03
64	GO:0006644: phospholipid metabolic process	2.88E-03
65	GO:0048564: photosystem I assembly	2.88E-03
66	GO:0009642: response to light intensity	2.88E-03
67	GO:0032544: plastid translation	3.29E-03
68	GO:0015996: chlorophyll catabolic process	3.29E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	3.29E-03
70	GO:0006783: heme biosynthetic process	3.72E-03
71	GO:0006754: ATP biosynthetic process	3.72E-03
72	GO:0009826: unidimensional cell growth	3.92E-03
73	GO:0006631: fatty acid metabolic process	4.03E-03
74	GO:0042761: very long-chain fatty acid biosynthetic process	4.17E-03
75	GO:0043069: negative regulation of programmed cell death	4.64E-03
76	GO:0006782: protoporphyrinogen IX biosynthetic process	4.64E-03
77	GO:0006415: translational termination	5.12E-03
78	GO:0009664: plant-type cell wall organization	5.48E-03
79	GO:0045037: protein import into chloroplast stroma	5.62E-03
80	GO:0006094: gluconeogenesis	6.14E-03
81	GO:0010223: secondary shoot formation	6.67E-03
82	GO:0009266: response to temperature stimulus	6.67E-03
83	GO:0010020: chloroplast fission	6.67E-03
84	GO:0019253: reductive pentose-phosphate cycle	6.67E-03
85	GO:0010167: response to nitrate	7.22E-03
86	GO:0010025: wax biosynthetic process	7.79E-03
87	GO:0051017: actin filament bundle assembly	8.38E-03
88	GO:0019344: cysteine biosynthetic process	8.38E-03
89	GO:0016998: cell wall macromolecule catabolic process	9.59E-03
90	GO:0010431: seed maturation	9.59E-03
91	GO:0031348: negative regulation of defense response	1.02E-02
92	GO:0009411: response to UV	1.09E-02
93	GO:0001944: vasculature development	1.09E-02
94	GO:0006012: galactose metabolic process	1.09E-02
95	GO:0010089: xylem development	1.15E-02
96	GO:0010091: trichome branching	1.15E-02
97	GO:0016117: carotenoid biosynthetic process	1.22E-02
98	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.22E-02
99	GO:0009737: response to abscisic acid	1.25E-02
100	GO:0071555: cell wall organization	1.26E-02
101	GO:0010087: phloem or xylem histogenesis	1.29E-02
102	GO:0000226: microtubule cytoskeleton organization	1.29E-02
103	GO:0010182: sugar mediated signaling pathway	1.36E-02
104	GO:0019252: starch biosynthetic process	1.50E-02
105	GO:0009735: response to cytokinin	1.64E-02
106	GO:0010583: response to cyclopentenone	1.65E-02
107	GO:0007166: cell surface receptor signaling pathway	1.66E-02
108	GO:0009627: systemic acquired resistance	2.22E-02
109	GO:0006974: cellular response to DNA damage stimulus	2.22E-02
110	GO:0015995: chlorophyll biosynthetic process	2.30E-02
111	GO:0005975: carbohydrate metabolic process	2.35E-02
112	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
113	GO:0006457: protein folding	2.54E-02
114	GO:0009813: flavonoid biosynthetic process	2.56E-02
115	GO:0009407: toxin catabolic process	2.65E-02
116	GO:0007568: aging	2.74E-02
117	GO:0010119: regulation of stomatal movement	2.74E-02
118	GO:0045087: innate immune response	2.93E-02
119	GO:0016051: carbohydrate biosynthetic process	2.93E-02
120	GO:0034599: cellular response to oxidative stress	3.02E-02
121	GO:0030001: metal ion transport	3.21E-02
122	GO:0045454: cell redox homeostasis	3.34E-02
123	GO:0009644: response to high light intensity	3.71E-02
124	GO:0007165: signal transduction	3.73E-02
125	GO:0009636: response to toxic substance	3.81E-02
126	GO:0016042: lipid catabolic process	3.99E-02
127	GO:0006629: lipid metabolic process	4.11E-02
128	GO:0042538: hyperosmotic salinity response	4.12E-02
129	GO:0009414: response to water deprivation	4.29E-02
130	GO:0009809: lignin biosynthetic process	4.34E-02
131	GO:0006486: protein glycosylation	4.34E-02
132	GO:0006979: response to oxidative stress	4.46E-02
133	GO:0006857: oligopeptide transport	4.55E-02
134	GO:0006096: glycolytic process	4.88E-02
135	GO:0048367: shoot system development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
2	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
3	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
4	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
8	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
9	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
10	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
13	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.14E-04
14	GO:0008289: lipid binding	1.14E-04
15	GO:0004645: phosphorylase activity	1.60E-04
16	GO:0004807: triose-phosphate isomerase activity	1.60E-04
17	GO:0008184: glycogen phosphorylase activity	1.60E-04
18	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.60E-04
19	GO:0080132: fatty acid alpha-hydroxylase activity	1.60E-04
20	GO:0004853: uroporphyrinogen decarboxylase activity	1.60E-04
21	GO:0042586: peptide deformylase activity	1.60E-04
22	GO:0005200: structural constituent of cytoskeleton	1.64E-04
23	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.43E-04
24	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.65E-04
25	GO:0004751: ribose-5-phosphate isomerase activity	5.97E-04
26	GO:0070402: NADPH binding	5.97E-04
27	GO:0005504: fatty acid binding	5.97E-04
28	GO:0016149: translation release factor activity, codon specific	8.53E-04
29	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	8.53E-04
30	GO:0045430: chalcone isomerase activity	1.13E-03
31	GO:0004623: phospholipase A2 activity	1.43E-03
32	GO:0009922: fatty acid elongase activity	1.43E-03
33	GO:0080030: methyl indole-3-acetate esterase activity	1.76E-03
34	GO:0051920: peroxiredoxin activity	2.11E-03
35	GO:0004747: ribokinase activity	2.11E-03
36	GO:0043295: glutathione binding	2.48E-03
37	GO:0008235: metalloexopeptidase activity	2.48E-03
38	GO:0052747: sinapyl alcohol dehydrogenase activity	2.88E-03
39	GO:0016209: antioxidant activity	2.88E-03
40	GO:0004034: aldose 1-epimerase activity	2.88E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	2.88E-03
42	GO:0008865: fructokinase activity	2.88E-03
43	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.72E-03
44	GO:0003747: translation release factor activity	3.72E-03
45	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.72E-03
46	GO:0051539: 4 iron, 4 sulfur cluster binding	3.86E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.09E-03
48	GO:0004177: aminopeptidase activity	5.12E-03
49	GO:0047372: acylglycerol lipase activity	5.12E-03
50	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.62E-03
51	GO:0008378: galactosyltransferase activity	5.62E-03
52	GO:0004089: carbonate dehydratase activity	6.14E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.58E-03
54	GO:0004871: signal transducer activity	7.21E-03
55	GO:0003924: GTPase activity	8.87E-03
56	GO:0033612: receptor serine/threonine kinase binding	9.59E-03
57	GO:0005102: receptor binding	1.22E-02
58	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.35E-02
59	GO:0003713: transcription coactivator activity	1.36E-02
60	GO:0008080: N-acetyltransferase activity	1.36E-02
61	GO:0016853: isomerase activity	1.43E-02
62	GO:0051015: actin filament binding	1.73E-02
63	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.89E-02
64	GO:0008237: metallopeptidase activity	1.89E-02
65	GO:0016491: oxidoreductase activity	1.90E-02
66	GO:0016788: hydrolase activity, acting on ester bonds	2.29E-02
67	GO:0008236: serine-type peptidase activity	2.39E-02
68	GO:0004222: metalloendopeptidase activity	2.65E-02
69	GO:0004364: glutathione transferase activity	3.41E-02
70	GO:0005525: GTP binding	3.42E-02
71	GO:0051537: 2 iron, 2 sulfur cluster binding	3.71E-02
72	GO:0015293: symporter activity	3.81E-02
73	GO:0005198: structural molecule activity	3.81E-02
74	GO:0005509: calcium ion binding	4.00E-02
75	GO:0009055: electron carrier activity	4.40E-02
76	GO:0003690: double-stranded DNA binding	4.44E-02
77	GO:0045735: nutrient reservoir activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	1.03E-17
3	GO:0009570: chloroplast stroma	7.10E-17
4	GO:0009543: chloroplast thylakoid lumen	1.13E-12
5	GO:0048046: apoplast	7.62E-12
6	GO:0031977: thylakoid lumen	2.52E-11
7	GO:0005618: cell wall	1.48E-09
8	GO:0009579: thylakoid	2.92E-09
9	GO:0009535: chloroplast thylakoid membrane	3.17E-09
10	GO:0009534: chloroplast thylakoid	4.45E-08
11	GO:0046658: anchored component of plasma membrane	3.68E-07
12	GO:0031225: anchored component of membrane	1.65E-06
13	GO:0045298: tubulin complex	3.45E-06
14	GO:0009505: plant-type cell wall	1.13E-05
15	GO:0009941: chloroplast envelope	5.74E-05
16	GO:0009515: granal stacked thylakoid	1.60E-04
17	GO:0009923: fatty acid elongase complex	1.60E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.60E-04
19	GO:0016020: membrane	5.51E-04
20	GO:0009528: plastid inner membrane	5.97E-04
21	GO:0009654: photosystem II oxygen evolving complex	6.66E-04
22	GO:0009532: plastid stroma	7.30E-04
23	GO:0009527: plastid outer membrane	1.13E-03
24	GO:0005576: extracellular region	1.35E-03
25	GO:0019898: extrinsic component of membrane	1.35E-03
26	GO:0009506: plasmodesma	1.67E-03
27	GO:0009533: chloroplast stromal thylakoid	2.48E-03
28	GO:0009707: chloroplast outer membrane	2.69E-03
29	GO:0005886: plasma membrane	4.63E-03
30	GO:0005874: microtubule	5.18E-03
31	GO:0030095: chloroplast photosystem II	6.67E-03
32	GO:0005875: microtubule associated complex	7.79E-03
33	GO:0009706: chloroplast inner membrane	8.37E-03
34	GO:0042651: thylakoid membrane	8.97E-03
35	GO:0031410: cytoplasmic vesicle	1.02E-02
36	GO:0015629: actin cytoskeleton	1.09E-02
37	GO:0010319: stromule	1.89E-02
38	GO:0031969: chloroplast membrane	2.79E-02
39	GO:0005856: cytoskeleton	3.81E-02