co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:2000505: regulation of energy homeostasis	0.00E+00
6	GO:0071555: cell wall organization	4.70E-06
7	GO:0010025: wax biosynthetic process	7.76E-06
8	GO:0006633: fatty acid biosynthetic process	8.99E-06
9	GO:0010411: xyloglucan metabolic process	1.28E-05
10	GO:0080170: hydrogen peroxide transmembrane transport	5.41E-05
11	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.41E-05
12	GO:0006085: acetyl-CoA biosynthetic process	9.53E-05
13	GO:0016042: lipid catabolic process	2.18E-04
14	GO:0007017: microtubule-based process	2.31E-04
15	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.99E-04
16	GO:0000032: cell wall mannoprotein biosynthetic process	3.99E-04
17	GO:0046520: sphingoid biosynthetic process	3.99E-04
18	GO:0032025: response to cobalt ion	3.99E-04
19	GO:0080051: cutin transport	3.99E-04
20	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.99E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	3.99E-04
22	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.99E-04
23	GO:0060627: regulation of vesicle-mediated transport	3.99E-04
24	GO:0005975: carbohydrate metabolic process	4.42E-04
25	GO:0034220: ion transmembrane transport	4.62E-04
26	GO:0042546: cell wall biogenesis	4.77E-04
27	GO:0006869: lipid transport	7.67E-04
28	GO:0043255: regulation of carbohydrate biosynthetic process	8.66E-04
29	GO:0015908: fatty acid transport	8.66E-04
30	GO:0010541: acropetal auxin transport	8.66E-04
31	GO:0031648: protein destabilization	8.66E-04
32	GO:0009416: response to light stimulus	8.75E-04
33	GO:0046168: glycerol-3-phosphate catabolic process	1.40E-03
34	GO:0010160: formation of animal organ boundary	1.40E-03
35	GO:1901562: response to paraquat	1.40E-03
36	GO:0045493: xylan catabolic process	1.40E-03
37	GO:0045793: positive regulation of cell size	1.40E-03
38	GO:2001295: malonyl-CoA biosynthetic process	1.40E-03
39	GO:0033591: response to L-ascorbic acid	1.40E-03
40	GO:1902448: positive regulation of shade avoidance	1.40E-03
41	GO:0010143: cutin biosynthetic process	1.56E-03
42	GO:0010207: photosystem II assembly	1.56E-03
43	GO:0009651: response to salt stress	1.60E-03
44	GO:0006833: water transport	1.95E-03
45	GO:0006072: glycerol-3-phosphate metabolic process	2.03E-03
46	GO:0009650: UV protection	2.03E-03
47	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.03E-03
48	GO:0010306: rhamnogalacturonan II biosynthetic process	2.03E-03
49	GO:0010731: protein glutathionylation	2.03E-03
50	GO:1901332: negative regulation of lateral root development	2.03E-03
51	GO:0050482: arachidonic acid secretion	2.03E-03
52	GO:0009413: response to flooding	2.03E-03
53	GO:0009298: GDP-mannose biosynthetic process	2.03E-03
54	GO:0007231: osmosensory signaling pathway	2.03E-03
55	GO:0051639: actin filament network formation	2.03E-03
56	GO:0034059: response to anoxia	2.03E-03
57	GO:0051017: actin filament bundle assembly	2.16E-03
58	GO:0016998: cell wall macromolecule catabolic process	2.62E-03
59	GO:0030104: water homeostasis	2.73E-03
60	GO:0033500: carbohydrate homeostasis	2.73E-03
61	GO:0010222: stem vascular tissue pattern formation	2.73E-03
62	GO:0051764: actin crosslink formation	2.73E-03
63	GO:0006183: GTP biosynthetic process	2.73E-03
64	GO:0045490: pectin catabolic process	2.79E-03
65	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.13E-03
66	GO:0006629: lipid metabolic process	3.69E-03
67	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.69E-03
68	GO:0009664: plant-type cell wall organization	3.70E-03
69	GO:0009414: response to water deprivation	3.88E-03
70	GO:0042335: cuticle development	3.99E-03
71	GO:0060918: auxin transport	4.32E-03
72	GO:0006796: phosphate-containing compound metabolic process	4.32E-03
73	GO:0010337: regulation of salicylic acid metabolic process	4.32E-03
74	GO:0006014: D-ribose metabolic process	4.32E-03
75	GO:0006751: glutathione catabolic process	4.32E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.32E-03
77	GO:0019252: starch biosynthetic process	4.96E-03
78	GO:0009826: unidimensional cell growth	5.13E-03
79	GO:0009612: response to mechanical stimulus	5.20E-03
80	GO:0006694: steroid biosynthetic process	5.20E-03
81	GO:0010019: chloroplast-nucleus signaling pathway	5.20E-03
82	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.20E-03
83	GO:0000302: response to reactive oxygen species	5.31E-03
84	GO:0010196: nonphotochemical quenching	6.15E-03
85	GO:0009645: response to low light intensity stimulus	6.15E-03
86	GO:0045995: regulation of embryonic development	6.15E-03
87	GO:0030497: fatty acid elongation	6.15E-03
88	GO:0009828: plant-type cell wall loosening	6.44E-03
89	GO:0009742: brassinosteroid mediated signaling pathway	6.85E-03
90	GO:0009819: drought recovery	7.15E-03
91	GO:0045010: actin nucleation	7.15E-03
92	GO:0006644: phospholipid metabolic process	7.15E-03
93	GO:0007165: signal transduction	7.69E-03
94	GO:0009737: response to abscisic acid	8.11E-03
95	GO:0009808: lignin metabolic process	8.21E-03
96	GO:0009932: cell tip growth	8.21E-03
97	GO:0015995: chlorophyll biosynthetic process	9.07E-03
98	GO:0051865: protein autoubiquitination	9.31E-03
99	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.31E-03
100	GO:0000902: cell morphogenesis	9.31E-03
101	GO:0045454: cell redox homeostasis	9.91E-03
102	GO:0042744: hydrogen peroxide catabolic process	1.00E-02
103	GO:0042761: very long-chain fatty acid biosynthetic process	1.05E-02
104	GO:0009638: phototropism	1.05E-02
105	GO:0009407: toxin catabolic process	1.11E-02
106	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.17E-02
107	GO:0006032: chitin catabolic process	1.17E-02
108	GO:0043069: negative regulation of programmed cell death	1.17E-02
109	GO:0007568: aging	1.17E-02
110	GO:0006949: syncytium formation	1.17E-02
111	GO:0016051: carbohydrate biosynthetic process	1.28E-02
112	GO:0006816: calcium ion transport	1.29E-02
113	GO:0009684: indoleacetic acid biosynthetic process	1.29E-02
114	GO:0010015: root morphogenesis	1.29E-02
115	GO:0000038: very long-chain fatty acid metabolic process	1.29E-02
116	GO:0034599: cellular response to oxidative stress	1.34E-02
117	GO:0016024: CDP-diacylglycerol biosynthetic process	1.43E-02
118	GO:0008361: regulation of cell size	1.43E-02
119	GO:0006631: fatty acid metabolic process	1.52E-02
120	GO:0007166: cell surface receptor signaling pathway	1.52E-02
121	GO:0010588: cotyledon vascular tissue pattern formation	1.56E-02
122	GO:0030036: actin cytoskeleton organization	1.56E-02
123	GO:0009725: response to hormone	1.56E-02
124	GO:0009640: photomorphogenesis	1.65E-02
125	GO:0010540: basipetal auxin transport	1.70E-02
126	GO:0009825: multidimensional cell growth	1.84E-02
127	GO:0010167: response to nitrate	1.84E-02
128	GO:0010030: positive regulation of seed germination	1.84E-02
129	GO:0070588: calcium ion transmembrane transport	1.84E-02
130	GO:0010053: root epidermal cell differentiation	1.84E-02
131	GO:0009969: xyloglucan biosynthetic process	1.84E-02
132	GO:0009636: response to toxic substance	1.86E-02
133	GO:0042538: hyperosmotic salinity response	2.08E-02
134	GO:0005992: trehalose biosynthetic process	2.14E-02
135	GO:0006486: protein glycosylation	2.23E-02
136	GO:0009860: pollen tube growth	2.44E-02
137	GO:0048511: rhythmic process	2.46E-02
138	GO:0010431: seed maturation	2.46E-02
139	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.63E-02
140	GO:0031348: negative regulation of defense response	2.63E-02
141	GO:0009411: response to UV	2.79E-02
142	GO:0006012: galactose metabolic process	2.79E-02
143	GO:0080167: response to karrikin	2.91E-02
144	GO:0048443: stamen development	2.96E-02
145	GO:0006284: base-excision repair	2.96E-02
146	GO:0009306: protein secretion	2.96E-02
147	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.04E-02
148	GO:0016117: carotenoid biosynthetic process	3.14E-02
149	GO:0000226: microtubule cytoskeleton organization	3.32E-02
150	GO:0000413: protein peptidyl-prolyl isomerization	3.32E-02
151	GO:0042631: cellular response to water deprivation	3.32E-02
152	GO:0009958: positive gravitropism	3.50E-02
153	GO:0010305: leaf vascular tissue pattern formation	3.50E-02
154	GO:0048868: pollen tube development	3.50E-02
155	GO:0042752: regulation of circadian rhythm	3.69E-02
156	GO:0045892: negative regulation of transcription, DNA-templated	3.71E-02
157	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.07E-02
158	GO:0071554: cell wall organization or biogenesis	4.07E-02
159	GO:0002229: defense response to oomycetes	4.07E-02
160	GO:0016132: brassinosteroid biosynthetic process	4.07E-02
161	GO:0010583: response to cyclopentenone	4.26E-02
162	GO:0007264: small GTPase mediated signal transduction	4.26E-02
163	GO:0071281: cellular response to iron ion	4.46E-02
164	GO:0010090: trichome morphogenesis	4.46E-02
165	GO:0009639: response to red or far red light	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
6	GO:0050614: delta24-sterol reductase activity	0.00E+00
7	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
8	GO:0003878: ATP citrate synthase activity	5.41E-05
9	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.28E-05
10	GO:0052689: carboxylic ester hydrolase activity	1.11E-04
11	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.67E-04
12	GO:0005528: FK506 binding	2.01E-04
13	GO:0004130: cytochrome-c peroxidase activity	2.12E-04
14	GO:0030570: pectate lyase activity	3.35E-04
15	GO:0016829: lyase activity	3.78E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.99E-04
17	GO:0080132: fatty acid alpha-hydroxylase activity	3.99E-04
18	GO:0004476: mannose-6-phosphate isomerase activity	3.99E-04
19	GO:0015245: fatty acid transporter activity	3.99E-04
20	GO:0000170: sphingosine hydroxylase activity	3.99E-04
21	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.99E-04
22	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.81E-04
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.69E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	8.66E-04
25	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.66E-04
26	GO:0003839: gamma-glutamylcyclotransferase activity	8.66E-04
27	GO:0003938: IMP dehydrogenase activity	8.66E-04
28	GO:0005200: structural constituent of cytoskeleton	9.17E-04
29	GO:0015250: water channel activity	1.06E-03
30	GO:0008378: galactosyltransferase activity	1.22E-03
31	GO:0016788: hydrolase activity, acting on ester bonds	1.31E-03
32	GO:0004565: beta-galactosidase activity	1.38E-03
33	GO:0050734: hydroxycinnamoyltransferase activity	1.40E-03
34	GO:0004075: biotin carboxylase activity	1.40E-03
35	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.40E-03
36	GO:0030267: glyoxylate reductase (NADP) activity	1.40E-03
37	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.40E-03
38	GO:0070330: aromatase activity	1.40E-03
39	GO:0008289: lipid binding	1.86E-03
40	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.95E-03
41	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.95E-03
42	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.95E-03
43	GO:0016851: magnesium chelatase activity	2.03E-03
44	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.03E-03
45	GO:0001872: (1->3)-beta-D-glucan binding	2.03E-03
46	GO:0004857: enzyme inhibitor activity	2.16E-03
47	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.50E-03
48	GO:0004364: glutathione transferase activity	2.63E-03
49	GO:1990137: plant seed peroxidase activity	2.73E-03
50	GO:0052793: pectin acetylesterase activity	2.73E-03
51	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.73E-03
52	GO:0009044: xylan 1,4-beta-xylosidase activity	2.73E-03
53	GO:0046556: alpha-L-arabinofuranosidase activity	2.73E-03
54	GO:0016836: hydro-lyase activity	2.73E-03
55	GO:0004040: amidase activity	3.49E-03
56	GO:0004623: phospholipase A2 activity	3.49E-03
57	GO:0018685: alkane 1-monooxygenase activity	3.49E-03
58	GO:0003989: acetyl-CoA carboxylase activity	3.49E-03
59	GO:0008725: DNA-3-methyladenine glycosylase activity	3.49E-03
60	GO:0009922: fatty acid elongase activity	3.49E-03
61	GO:0003924: GTPase activity	3.69E-03
62	GO:0004629: phospholipase C activity	4.32E-03
63	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.32E-03
64	GO:0016688: L-ascorbate peroxidase activity	4.32E-03
65	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.32E-03
66	GO:0008200: ion channel inhibitor activity	4.32E-03
67	GO:0019901: protein kinase binding	4.96E-03
68	GO:0051753: mannan synthase activity	5.20E-03
69	GO:0004017: adenylate kinase activity	5.20E-03
70	GO:0004747: ribokinase activity	5.20E-03
71	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.20E-03
72	GO:0004435: phosphatidylinositol phospholipase C activity	5.20E-03
73	GO:0051920: peroxiredoxin activity	5.20E-03
74	GO:0051015: actin filament binding	6.05E-03
75	GO:0043295: glutathione binding	6.15E-03
76	GO:0004427: inorganic diphosphatase activity	6.15E-03
77	GO:0004034: aldose 1-epimerase activity	7.15E-03
78	GO:0004869: cysteine-type endopeptidase inhibitor activity	7.15E-03
79	GO:0008865: fructokinase activity	7.15E-03
80	GO:0016209: antioxidant activity	7.15E-03
81	GO:0030247: polysaccharide binding	9.07E-03
82	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	9.31E-03
83	GO:0005096: GTPase activator activity	1.06E-02
84	GO:0004871: signal transducer activity	1.06E-02
85	GO:0004805: trehalose-phosphatase activity	1.17E-02
86	GO:0030234: enzyme regulator activity	1.17E-02
87	GO:0004568: chitinase activity	1.17E-02
88	GO:0015020: glucuronosyltransferase activity	1.17E-02
89	GO:0047372: acylglycerol lipase activity	1.29E-02
90	GO:0003993: acid phosphatase activity	1.34E-02
91	GO:0010329: auxin efflux transmembrane transporter activity	1.56E-02
92	GO:0005262: calcium channel activity	1.56E-02
93	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.73E-02
94	GO:0005516: calmodulin binding	2.03E-02
95	GO:0016491: oxidoreductase activity	2.03E-02
96	GO:0004601: peroxidase activity	2.22E-02
97	GO:0005525: GTP binding	2.36E-02
98	GO:0045735: nutrient reservoir activity	2.64E-02
99	GO:0004650: polygalacturonase activity	2.90E-02
100	GO:0016746: transferase activity, transferring acyl groups	3.27E-02
101	GO:0016853: isomerase activity	3.69E-02
102	GO:0004872: receptor activity	3.87E-02
103	GO:0004518: nuclease activity	4.26E-02
104	GO:0016791: phosphatase activity	4.66E-02
105	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009505: plant-type cell wall	9.38E-12
2	GO:0005576: extracellular region	9.82E-11
3	GO:0005618: cell wall	4.58E-10
4	GO:0009534: chloroplast thylakoid	3.87E-09
5	GO:0009543: chloroplast thylakoid lumen	1.71E-08
6	GO:0048046: apoplast	5.18E-08
7	GO:0031977: thylakoid lumen	1.45E-07
8	GO:0031225: anchored component of membrane	1.65E-07
9	GO:0005886: plasma membrane	1.92E-07
10	GO:0009535: chloroplast thylakoid membrane	1.93E-06
11	GO:0046658: anchored component of plasma membrane	3.03E-06
12	GO:0009346: citrate lyase complex	5.41E-05
13	GO:0009507: chloroplast	1.32E-04
14	GO:0009570: chloroplast stroma	1.52E-04
15	GO:0009579: thylakoid	3.74E-04
16	GO:0043674: columella	3.99E-04
17	GO:0045298: tubulin complex	6.76E-04
18	GO:0005773: vacuole	1.10E-03
19	GO:0009506: plasmodesma	1.15E-03
20	GO:0009897: external side of plasma membrane	1.40E-03
21	GO:0010007: magnesium chelatase complex	1.40E-03
22	GO:0005875: microtubule associated complex	1.95E-03
23	GO:0032432: actin filament bundle	2.03E-03
24	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.03E-03
25	GO:0015630: microtubule cytoskeleton	2.03E-03
26	GO:0009531: secondary cell wall	2.03E-03
27	GO:0016020: membrane	2.50E-03
28	GO:0009941: chloroplast envelope	4.27E-03
29	GO:0031209: SCAR complex	4.32E-03
30	GO:0042807: central vacuole	6.15E-03
31	GO:0009533: chloroplast stromal thylakoid	6.15E-03
32	GO:0005874: microtubule	7.15E-03
33	GO:0010287: plastoglobule	7.91E-03
34	GO:0005811: lipid particle	8.21E-03
35	GO:0005884: actin filament	1.29E-02
36	GO:0030095: chloroplast photosystem II	1.70E-02
37	GO:0005887: integral component of plasma membrane	2.15E-02
38	GO:0042651: thylakoid membrane	2.30E-02
39	GO:0009654: photosystem II oxygen evolving complex	2.30E-02
40	GO:0031410: cytoplasmic vesicle	2.63E-02
41	GO:0015629: actin cytoskeleton	2.79E-02
42	GO:0019898: extrinsic component of membrane	3.87E-02
43	GO:0005794: Golgi apparatus	4.76E-02