co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0006094: gluconeogenesis	7.37E-06
4	GO:0015979: photosynthesis	1.01E-05
5	GO:0015994: chlorophyll metabolic process	1.33E-05
6	GO:0000476: maturation of 4.5S rRNA	1.25E-04
7	GO:0000967: rRNA 5'-end processing	1.25E-04
8	GO:0010206: photosystem II repair	1.25E-04
9	GO:0000481: maturation of 5S rRNA	1.25E-04
10	GO:0051247: positive regulation of protein metabolic process	1.25E-04
11	GO:0010028: xanthophyll cycle	1.25E-04
12	GO:0034337: RNA folding	1.25E-04
13	GO:2000905: negative regulation of starch metabolic process	1.25E-04
14	GO:0018298: protein-chromophore linkage	1.76E-04
15	GO:0034755: iron ion transmembrane transport	2.90E-04
16	GO:0016560: protein import into peroxisome matrix, docking	2.90E-04
17	GO:0016122: xanthophyll metabolic process	2.90E-04
18	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.90E-04
19	GO:0010270: photosystem II oxygen evolving complex assembly	2.90E-04
20	GO:0034470: ncRNA processing	2.90E-04
21	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.90E-04
22	GO:0006000: fructose metabolic process	4.78E-04
23	GO:0048586: regulation of long-day photoperiodism, flowering	4.78E-04
24	GO:0006518: peptide metabolic process	4.78E-04
25	GO:0009768: photosynthesis, light harvesting in photosystem I	4.81E-04
26	GO:0006096: glycolytic process	6.21E-04
27	GO:0006515: misfolded or incompletely synthesized protein catabolic process	6.85E-04
28	GO:0046836: glycolipid transport	6.85E-04
29	GO:1902476: chloride transmembrane transport	6.85E-04
30	GO:2000306: positive regulation of photomorphogenesis	9.08E-04
31	GO:0045727: positive regulation of translation	9.08E-04
32	GO:0016120: carotene biosynthetic process	1.15E-03
33	GO:0006461: protein complex assembly	1.15E-03
34	GO:0006828: manganese ion transport	1.41E-03
35	GO:0000741: karyogamy	1.41E-03
36	GO:0042549: photosystem II stabilization	1.41E-03
37	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.68E-03
38	GO:0010196: nonphotochemical quenching	1.98E-03
39	GO:0006821: chloride transport	1.98E-03
40	GO:0009645: response to low light intensity stimulus	1.98E-03
41	GO:0009735: response to cytokinin	2.24E-03
42	GO:0032508: DNA duplex unwinding	2.29E-03
43	GO:0010492: maintenance of shoot apical meristem identity	2.29E-03
44	GO:0009657: plastid organization	2.61E-03
45	GO:0032544: plastid translation	2.61E-03
46	GO:0006002: fructose 6-phosphate metabolic process	2.61E-03
47	GO:0009658: chloroplast organization	2.67E-03
48	GO:0006098: pentose-phosphate shunt	2.95E-03
49	GO:0048507: meristem development	2.95E-03
50	GO:0009821: alkaloid biosynthetic process	2.95E-03
51	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.95E-03
52	GO:0009051: pentose-phosphate shunt, oxidative branch	2.95E-03
53	GO:0009644: response to high light intensity	3.37E-03
54	GO:0006816: calcium ion transport	4.06E-03
55	GO:0009698: phenylpropanoid metabolic process	4.06E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	4.06E-03
57	GO:0006879: cellular iron ion homeostasis	4.06E-03
58	GO:0009750: response to fructose	4.06E-03
59	GO:0018119: peptidyl-cysteine S-nitrosylation	4.06E-03
60	GO:0016485: protein processing	4.06E-03
61	GO:0006364: rRNA processing	4.20E-03
62	GO:0005983: starch catabolic process	4.45E-03
63	GO:0015706: nitrate transport	4.45E-03
64	GO:0006006: glucose metabolic process	4.86E-03
65	GO:0018107: peptidyl-threonine phosphorylation	4.86E-03
66	GO:0009767: photosynthetic electron transport chain	4.86E-03
67	GO:0005986: sucrose biosynthetic process	4.86E-03
68	GO:0019253: reductive pentose-phosphate cycle	5.28E-03
69	GO:0010207: photosystem II assembly	5.28E-03
70	GO:0010167: response to nitrate	5.71E-03
71	GO:0008152: metabolic process	6.51E-03
72	GO:0016575: histone deacetylation	7.08E-03
73	GO:0061077: chaperone-mediated protein folding	7.56E-03
74	GO:0080092: regulation of pollen tube growth	8.05E-03
75	GO:0040007: growth	8.56E-03
76	GO:0010197: polar nucleus fusion	1.07E-02
77	GO:0010468: regulation of gene expression	1.23E-02
78	GO:0035556: intracellular signal transduction	1.28E-02
79	GO:0006810: transport	1.34E-02
80	GO:0030163: protein catabolic process	1.36E-02
81	GO:0071805: potassium ion transmembrane transport	1.48E-02
82	GO:0001666: response to hypoxia	1.61E-02
83	GO:0010029: regulation of seed germination	1.67E-02
84	GO:0042128: nitrate assimilation	1.74E-02
85	GO:0016311: dephosphorylation	1.87E-02
86	GO:0010218: response to far red light	2.08E-02
87	GO:0048527: lateral root development	2.15E-02
88	GO:0009637: response to blue light	2.30E-02
89	GO:0006631: fatty acid metabolic process	2.60E-02
90	GO:0010114: response to red light	2.75E-02
91	GO:0032259: methylation	2.81E-02
92	GO:0006629: lipid metabolic process	2.93E-02
93	GO:0006855: drug transmembrane transport	3.07E-02
94	GO:0006813: potassium ion transport	3.40E-02
95	GO:0006857: oligopeptide transport	3.57E-02
96	GO:0009740: gibberellic acid mediated signaling pathway	4.19E-02
97	GO:0009409: response to cold	4.22E-02
98	GO:0018105: peptidyl-serine phosphorylation	4.47E-02
99	GO:0005975: carbohydrate metabolic process	4.84E-02
100	GO:0009738: abscisic acid-activated signaling pathway	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0042903: tubulin deacetylase activity	0.00E+00
4	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
5	GO:0043014: alpha-tubulin binding	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
8	GO:0005528: FK506 binding	2.56E-07
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.17E-05
10	GO:0004332: fructose-bisphosphate aldolase activity	3.28E-05
11	GO:0009671: nitrate:proton symporter activity	1.25E-04
12	GO:0016168: chlorophyll binding	1.30E-04
13	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.90E-04
14	GO:0047746: chlorophyllase activity	2.90E-04
15	GO:0016868: intramolecular transferase activity, phosphotransferases	2.90E-04
16	GO:0004618: phosphoglycerate kinase activity	2.90E-04
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.90E-04
18	GO:0031409: pigment binding	3.93E-04
19	GO:0048487: beta-tubulin binding	6.85E-04
20	GO:0017089: glycolipid transporter activity	6.85E-04
21	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	9.08E-04
22	GO:0005253: anion channel activity	9.08E-04
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.08E-04
24	GO:0051861: glycolipid binding	9.08E-04
25	GO:0019843: rRNA binding	1.03E-03
26	GO:0008374: O-acyltransferase activity	1.15E-03
27	GO:0004252: serine-type endopeptidase activity	1.17E-03
28	GO:0042578: phosphoric ester hydrolase activity	1.41E-03
29	GO:0005247: voltage-gated chloride channel activity	1.41E-03
30	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.68E-03
31	GO:0008236: serine-type peptidase activity	1.83E-03
32	GO:0004033: aldo-keto reductase (NADP) activity	2.29E-03
33	GO:0043022: ribosome binding	2.29E-03
34	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.61E-03
35	GO:0005381: iron ion transmembrane transporter activity	3.31E-03
36	GO:0005384: manganese ion transmembrane transporter activity	3.31E-03
37	GO:0016844: strictosidine synthase activity	3.31E-03
38	GO:0015112: nitrate transmembrane transporter activity	3.31E-03
39	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.06E-03
40	GO:0004565: beta-galactosidase activity	4.86E-03
41	GO:0004022: alcohol dehydrogenase (NAD) activity	4.86E-03
42	GO:0015095: magnesium ion transmembrane transporter activity	4.86E-03
43	GO:0031072: heat shock protein binding	4.86E-03
44	GO:0008266: poly(U) RNA binding	5.28E-03
45	GO:0004407: histone deacetylase activity	6.61E-03
46	GO:0016787: hydrolase activity	6.98E-03
47	GO:0015079: potassium ion transmembrane transporter activity	7.08E-03
48	GO:0004707: MAP kinase activity	7.56E-03
49	GO:0004176: ATP-dependent peptidase activity	7.56E-03
50	GO:0022891: substrate-specific transmembrane transporter activity	8.56E-03
51	GO:0003756: protein disulfide isomerase activity	9.07E-03
52	GO:0050662: coenzyme binding	1.12E-02
53	GO:0003743: translation initiation factor activity	1.20E-02
54	GO:0004518: nuclease activity	1.30E-02
55	GO:0008168: methyltransferase activity	1.54E-02
56	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.87E-02
57	GO:0015238: drug transmembrane transporter activity	2.01E-02
58	GO:0004222: metalloendopeptidase activity	2.08E-02
59	GO:0003735: structural constituent of ribosome	2.11E-02
60	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.15E-02
61	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.37E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.45E-02
63	GO:0050661: NADP binding	2.52E-02
64	GO:0004185: serine-type carboxypeptidase activity	2.75E-02
65	GO:0043621: protein self-association	2.91E-02
66	GO:0015293: symporter activity	2.99E-02
67	GO:0005215: transporter activity	3.29E-02
68	GO:0016298: lipase activity	3.49E-02
69	GO:0008289: lipid binding	4.07E-02
70	GO:0016874: ligase activity	4.19E-02
71	GO:0051082: unfolded protein binding	4.37E-02
72	GO:0003729: mRNA binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0043233: organelle lumen	0.00E+00
3	GO:0009507: chloroplast	6.82E-24
4	GO:0009534: chloroplast thylakoid	7.82E-17
5	GO:0009535: chloroplast thylakoid membrane	1.19E-13
6	GO:0009543: chloroplast thylakoid lumen	8.96E-12
7	GO:0009570: chloroplast stroma	4.66E-11
8	GO:0009941: chloroplast envelope	3.90E-10
9	GO:0009579: thylakoid	8.09E-09
10	GO:0030095: chloroplast photosystem II	9.11E-06
11	GO:0031977: thylakoid lumen	1.98E-05
12	GO:0009533: chloroplast stromal thylakoid	6.22E-05
13	GO:0010287: plastoglobule	1.11E-04
14	GO:0009782: photosystem I antenna complex	1.25E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.25E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	1.25E-04
17	GO:0030076: light-harvesting complex	3.52E-04
18	GO:0005782: peroxisomal matrix	4.78E-04
19	GO:0009654: photosystem II oxygen evolving complex	4.81E-04
20	GO:0031969: chloroplast membrane	6.02E-04
21	GO:0009523: photosystem II	9.76E-04
22	GO:0019898: extrinsic component of membrane	9.76E-04
23	GO:0034707: chloride channel complex	1.41E-03
24	GO:0032040: small-subunit processome	4.45E-03
25	GO:0000312: plastid small ribosomal subunit	5.28E-03
26	GO:0042651: thylakoid membrane	7.08E-03
27	GO:0005840: ribosome	8.05E-03
28	GO:0009522: photosystem I	1.12E-02
29	GO:0016592: mediator complex	1.30E-02
30	GO:0010319: stromule	1.48E-02
31	GO:0048046: apoplast	1.74E-02
32	GO:0016021: integral component of membrane	1.87E-02
33	GO:0016020: membrane	3.13E-02
34	GO:0005773: vacuole	3.29E-02
35	GO:0009706: chloroplast inner membrane	4.37E-02