Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G38540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046322: negative regulation of fatty acid oxidation0.00E+00
2GO:0032212: positive regulation of telomere maintenance via telomerase0.00E+00
3GO:0042493: response to drug0.00E+00
4GO:0032206: positive regulation of telomere maintenance0.00E+00
5GO:1905499: trichome papilla formation0.00E+00
6GO:0019323: pentose catabolic process0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0071555: cell wall organization9.21E-08
11GO:0009828: plant-type cell wall loosening2.13E-06
12GO:0007017: microtubule-based process5.74E-06
13GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.05E-05
14GO:0006949: syncytium formation3.10E-05
15GO:0006633: fatty acid biosynthetic process3.26E-05
16GO:0009664: plant-type cell wall organization3.98E-05
17GO:0009765: photosynthesis, light harvesting6.35E-05
18GO:0010411: xyloglucan metabolic process8.90E-05
19GO:0010025: wax biosynthetic process1.04E-04
20GO:0009826: unidimensional cell growth1.13E-04
21GO:0042546: cell wall biogenesis2.70E-04
22GO:0042335: cuticle development2.90E-04
23GO:0045490: pectin catabolic process3.06E-04
24GO:0044262: cellular carbohydrate metabolic process3.14E-04
25GO:0032025: response to cobalt ion3.14E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.14E-04
27GO:1904964: positive regulation of phytol biosynthetic process3.14E-04
28GO:0042759: long-chain fatty acid biosynthetic process3.14E-04
29GO:0043686: co-translational protein modification3.14E-04
30GO:1902458: positive regulation of stomatal opening3.14E-04
31GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.14E-04
32GO:0071588: hydrogen peroxide mediated signaling pathway3.14E-04
33GO:0060627: regulation of vesicle-mediated transport3.14E-04
34GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.14E-04
35GO:0005980: glycogen catabolic process3.14E-04
36GO:0000032: cell wall mannoprotein biosynthetic process3.14E-04
37GO:0006869: lipid transport3.69E-04
38GO:0016042: lipid catabolic process4.44E-04
39GO:0005975: carbohydrate metabolic process5.02E-04
40GO:0042761: very long-chain fatty acid biosynthetic process5.66E-04
41GO:0071258: cellular response to gravity6.87E-04
42GO:1903426: regulation of reactive oxygen species biosynthetic process6.87E-04
43GO:0010198: synergid death6.87E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process6.87E-04
45GO:0090391: granum assembly1.11E-03
46GO:1901562: response to paraquat1.11E-03
47GO:0006065: UDP-glucuronate biosynthetic process1.11E-03
48GO:0033591: response to L-ascorbic acid1.11E-03
49GO:0046168: glycerol-3-phosphate catabolic process1.11E-03
50GO:0010207: photosystem II assembly1.11E-03
51GO:0006833: water transport1.37E-03
52GO:0010731: protein glutathionylation1.60E-03
53GO:0006424: glutamyl-tRNA aminoacylation1.60E-03
54GO:0050482: arachidonic acid secretion1.60E-03
55GO:0009413: response to flooding1.60E-03
56GO:0009298: GDP-mannose biosynthetic process1.60E-03
57GO:0007231: osmosensory signaling pathway1.60E-03
58GO:0006072: glycerol-3-phosphate metabolic process1.60E-03
59GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.60E-03
60GO:0009052: pentose-phosphate shunt, non-oxidative branch1.60E-03
61GO:0009650: UV protection1.60E-03
62GO:0010306: rhamnogalacturonan II biosynthetic process1.60E-03
63GO:0030245: cellulose catabolic process2.02E-03
64GO:0009956: radial pattern formation2.14E-03
65GO:0006085: acetyl-CoA biosynthetic process2.14E-03
66GO:0006183: GTP biosynthetic process2.14E-03
67GO:0033500: carbohydrate homeostasis2.14E-03
68GO:0042538: hyperosmotic salinity response2.35E-03
69GO:0016120: carotene biosynthetic process2.74E-03
70GO:0032543: mitochondrial translation2.74E-03
71GO:0045038: protein import into chloroplast thylakoid membrane2.74E-03
72GO:0031365: N-terminal protein amino acid modification2.74E-03
73GO:0016123: xanthophyll biosynthetic process2.74E-03
74GO:0006665: sphingolipid metabolic process2.74E-03
75GO:0034220: ion transmembrane transport2.80E-03
76GO:0000413: protein peptidyl-prolyl isomerization2.80E-03
77GO:0006014: D-ribose metabolic process3.38E-03
78GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.38E-03
79GO:0010583: response to cyclopentenone3.97E-03
80GO:0009624: response to nematode4.03E-03
81GO:0009612: response to mechanical stimulus4.06E-03
82GO:0010019: chloroplast-nucleus signaling pathway4.06E-03
83GO:0010555: response to mannitol4.06E-03
84GO:0009645: response to low light intensity stimulus4.80E-03
85GO:0007050: cell cycle arrest4.80E-03
86GO:0010196: nonphotochemical quenching4.80E-03
87GO:0010027: thylakoid membrane organization5.37E-03
88GO:2000070: regulation of response to water deprivation5.57E-03
89GO:0006644: phospholipid metabolic process5.57E-03
90GO:0009819: drought recovery5.57E-03
91GO:0009642: response to light intensity5.57E-03
92GO:0009414: response to water deprivation5.67E-03
93GO:0015996: chlorophyll catabolic process6.39E-03
94GO:0007186: G-protein coupled receptor signaling pathway6.39E-03
95GO:0006629: lipid metabolic process7.90E-03
96GO:0007568: aging8.12E-03
97GO:0000723: telomere maintenance8.14E-03
98GO:0016051: carbohydrate biosynthetic process8.90E-03
99GO:0009870: defense response signaling pathway, resistance gene-dependent9.07E-03
100GO:0043069: negative regulation of programmed cell death9.07E-03
101GO:0010015: root morphogenesis1.00E-02
102GO:0006816: calcium ion transport1.00E-02
103GO:0006631: fatty acid metabolic process1.06E-02
104GO:0045037: protein import into chloroplast stroma1.11E-02
105GO:0016024: CDP-diacylglycerol biosynthetic process1.11E-02
106GO:0050826: response to freezing1.21E-02
107GO:0009266: response to temperature stimulus1.32E-02
108GO:0010143: cutin biosynthetic process1.32E-02
109GO:0009933: meristem structural organization1.32E-02
110GO:0070588: calcium ion transmembrane transport1.43E-02
111GO:0009969: xyloglucan biosynthetic process1.43E-02
112GO:0009825: multidimensional cell growth1.43E-02
113GO:0009833: plant-type primary cell wall biogenesis1.54E-02
114GO:0006486: protein glycosylation1.55E-02
115GO:0051017: actin filament bundle assembly1.66E-02
116GO:0019344: cysteine biosynthetic process1.66E-02
117GO:0019953: sexual reproduction1.78E-02
118GO:0016998: cell wall macromolecule catabolic process1.91E-02
119GO:0048511: rhythmic process1.91E-02
120GO:0010431: seed maturation1.91E-02
121GO:0031348: negative regulation of defense response2.03E-02
122GO:0009294: DNA mediated transformation2.16E-02
123GO:0009411: response to UV2.16E-02
124GO:0006012: galactose metabolic process2.16E-02
125GO:0015979: photosynthesis2.19E-02
126GO:0010091: trichome branching2.29E-02
127GO:0019722: calcium-mediated signaling2.29E-02
128GO:0016117: carotenoid biosynthetic process2.43E-02
129GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.43E-02
130GO:0009737: response to abscisic acid2.54E-02
131GO:0080022: primary root development2.57E-02
132GO:0000226: microtubule cytoskeleton organization2.57E-02
133GO:0010305: leaf vascular tissue pattern formation2.71E-02
134GO:0010182: sugar mediated signaling pathway2.71E-02
135GO:0048868: pollen tube development2.71E-02
136GO:0042752: regulation of circadian rhythm2.85E-02
137GO:0019252: starch biosynthetic process3.00E-02
138GO:0000302: response to reactive oxygen species3.15E-02
139GO:0071554: cell wall organization or biogenesis3.15E-02
140GO:0007267: cell-cell signaling3.77E-02
141GO:0051607: defense response to virus3.92E-02
142GO:0009739: response to gibberellin4.28E-02
143GO:0007166: cell surface receptor signaling pathway4.37E-02
144GO:0009627: systemic acquired resistance4.42E-02
145GO:0042128: nitrate assimilation4.42E-02
146GO:0006974: cellular response to DNA damage stimulus4.42E-02
147GO:0030244: cellulose biosynthetic process4.93E-02
148GO:0018298: protein-chromophore linkage4.93E-02
149GO:0009817: defense response to fungus, incompatible interaction4.93E-02
RankGO TermAdjusted P value
1GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
2GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity4.48E-06
9GO:0030570: pectate lyase activity1.05E-05
10GO:0016762: xyloglucan:xyloglucosyl transferase activity3.18E-05
11GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity3.55E-05
12GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.71E-05
13GO:0052689: carboxylic ester hydrolase activity4.07E-05
14GO:0005200: structural constituent of cytoskeleton5.23E-05
15GO:0016798: hydrolase activity, acting on glycosyl bonds8.90E-05
16GO:0016788: hydrolase activity, acting on ester bonds1.30E-04
17GO:0051753: mannan synthase activity1.97E-04
18GO:0004645: phosphorylase activity3.14E-04
19GO:0042586: peptide deformylase activity3.14E-04
20GO:0004476: mannose-6-phosphate isomerase activity3.14E-04
21GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.14E-04
22GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.14E-04
23GO:0004560: alpha-L-fucosidase activity3.14E-04
24GO:0008184: glycogen phosphorylase activity3.14E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.14E-04
26GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.14E-04
27GO:0080132: fatty acid alpha-hydroxylase activity3.14E-04
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.26E-04
29GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors4.78E-04
30GO:0003938: IMP dehydrogenase activity6.87E-04
31GO:0004750: ribulose-phosphate 3-epimerase activity6.87E-04
32GO:0008378: galactosyltransferase activity8.70E-04
33GO:0008289: lipid binding9.13E-04
34GO:0045174: glutathione dehydrogenase (ascorbate) activity1.11E-03
35GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.11E-03
36GO:0003979: UDP-glucose 6-dehydrogenase activity1.11E-03
37GO:0005504: fatty acid binding1.11E-03
38GO:0016829: lyase activity1.12E-03
39GO:0005528: FK506 binding1.52E-03
40GO:0001872: (1->3)-beta-D-glucan binding1.60E-03
41GO:0003878: ATP citrate synthase activity1.60E-03
42GO:0043047: single-stranded telomeric DNA binding1.60E-03
43GO:0003924: GTPase activity1.96E-03
44GO:0043495: protein anchor2.14E-03
45GO:0016836: hydro-lyase activity2.14E-03
46GO:1990137: plant seed peroxidase activity2.14E-03
47GO:0052793: pectin acetylesterase activity2.14E-03
48GO:0045430: chalcone isomerase activity2.14E-03
49GO:0008810: cellulase activity2.20E-03
50GO:0004623: phospholipase A2 activity2.74E-03
51GO:0009922: fatty acid elongase activity2.74E-03
52GO:0016688: L-ascorbate peroxidase activity3.38E-03
53GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.38E-03
54GO:0080030: methyl indole-3-acetate esterase activity3.38E-03
55GO:0004629: phospholipase C activity3.38E-03
56GO:0004130: cytochrome-c peroxidase activity3.38E-03
57GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.38E-03
58GO:0004435: phosphatidylinositol phospholipase C activity4.06E-03
59GO:0051920: peroxiredoxin activity4.06E-03
60GO:0004747: ribokinase activity4.06E-03
61GO:0019899: enzyme binding4.80E-03
62GO:0043295: glutathione binding4.80E-03
63GO:0042162: telomeric DNA binding4.80E-03
64GO:0015250: water channel activity5.37E-03
65GO:0052747: sinapyl alcohol dehydrogenase activity5.57E-03
66GO:0008865: fructokinase activity5.57E-03
67GO:0016209: antioxidant activity5.57E-03
68GO:0004034: aldose 1-epimerase activity5.57E-03
69GO:0004871: signal transducer activity6.16E-03
70GO:0015020: glucuronosyltransferase activity9.07E-03
71GO:0047372: acylglycerol lipase activity1.00E-02
72GO:0004364: glutathione transferase activity1.10E-02
73GO:0045551: cinnamyl-alcohol dehydrogenase activity1.11E-02
74GO:0005262: calcium channel activity1.21E-02
75GO:0004565: beta-galactosidase activity1.21E-02
76GO:0005525: GTP binding1.28E-02
77GO:0051287: NAD binding1.40E-02
78GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.54E-02
79GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.54E-02
80GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.54E-02
81GO:0004857: enzyme inhibitor activity1.66E-02
82GO:0045735: nutrient reservoir activity1.84E-02
83GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.90E-02
84GO:0030599: pectinesterase activity2.09E-02
85GO:0016760: cellulose synthase (UDP-forming) activity2.16E-02
86GO:0022891: substrate-specific transmembrane transporter activity2.16E-02
87GO:0003713: transcription coactivator activity2.71E-02
88GO:0016853: isomerase activity2.85E-02
89GO:0051015: actin filament binding3.45E-02
90GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.57E-02
91GO:0016791: phosphatase activity3.61E-02
92GO:0016759: cellulose synthase activity3.61E-02
93GO:0016722: oxidoreductase activity, oxidizing metal ions3.77E-02
94GO:0016413: O-acetyltransferase activity3.92E-02
95GO:0016168: chlorophyll binding4.25E-02
96GO:0008375: acetylglucosaminyltransferase activity4.42E-02
97GO:0030247: polysaccharide binding4.59E-02
98GO:0005509: calcium ion binding4.68E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0005618: cell wall2.16E-13
3GO:0048046: apoplast7.84E-13
4GO:0031225: anchored component of membrane1.78E-10
5GO:0031977: thylakoid lumen1.36E-09
6GO:0009543: chloroplast thylakoid lumen3.49E-09
7GO:0009535: chloroplast thylakoid membrane3.89E-09
8GO:0009534: chloroplast thylakoid4.45E-09
9GO:0005576: extracellular region6.82E-09
10GO:0009505: plant-type cell wall4.16E-08
11GO:0009570: chloroplast stroma5.08E-08
12GO:0046658: anchored component of plasma membrane5.26E-08
13GO:0009579: thylakoid4.38E-07
14GO:0009507: chloroplast5.36E-06
15GO:0005886: plasma membrane5.59E-06
16GO:0045298: tubulin complex1.77E-05
17GO:0016020: membrane7.89E-05
18GO:0009941: chloroplast envelope2.04E-04
19GO:0009515: granal stacked thylakoid3.14E-04
20GO:0009923: fatty acid elongase complex3.14E-04
21GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.14E-04
22GO:0005697: telomerase holoenzyme complex6.87E-04
23GO:0009528: plastid inner membrane1.11E-03
24GO:0005875: microtubule associated complex1.37E-03
25GO:0009346: citrate lyase complex1.60E-03
26GO:0009331: glycerol-3-phosphate dehydrogenase complex1.60E-03
27GO:0015630: microtubule cytoskeleton1.60E-03
28GO:0009654: photosystem II oxygen evolving complex1.68E-03
29GO:0009527: plastid outer membrane2.14E-03
30GO:0019898: extrinsic component of membrane3.47E-03
31GO:0005874: microtubule4.14E-03
32GO:0010319: stromule4.79E-03
33GO:0009533: chloroplast stromal thylakoid4.80E-03
34GO:0005811: lipid particle6.39E-03
35GO:0000784: nuclear chromosome, telomeric region6.39E-03
36GO:0009506: plasmodesma6.45E-03
37GO:0009707: chloroplast outer membrane7.02E-03
38GO:0030095: chloroplast photosystem II1.32E-02
39GO:0042651: thylakoid membrane1.78E-02
40GO:0009532: plastid stroma1.91E-02
41GO:0031410: cytoplasmic vesicle2.03E-02
42GO:0015629: actin cytoskeleton2.16E-02
43GO:0010287: plastoglobule2.63E-02
44GO:0009523: photosystem II3.00E-02
45GO:0005887: integral component of plasma membrane4.40E-02
46GO:0000151: ubiquitin ligase complex4.93E-02
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Gene type



Gene DE type