co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G37660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0006223: uracil salvage	0.00E+00
8	GO:0032544: plastid translation	5.54E-16
9	GO:0015995: chlorophyll biosynthetic process	2.08E-14
10	GO:0006412: translation	4.05E-14
11	GO:0006782: protoporphyrinogen IX biosynthetic process	1.82E-12
12	GO:0006783: heme biosynthetic process	2.27E-08
13	GO:0006779: porphyrin-containing compound biosynthetic process	3.49E-08
14	GO:0009658: chloroplast organization	7.17E-06
15	GO:0042254: ribosome biogenesis	7.57E-06
16	GO:0009735: response to cytokinin	1.59E-05
17	GO:1901259: chloroplast rRNA processing	6.00E-05
18	GO:0071482: cellular response to light stimulus	1.30E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	1.48E-04
20	GO:0042371: vitamin K biosynthetic process	1.48E-04
21	GO:0034337: RNA folding	1.48E-04
22	GO:0048363: mucilage pectin metabolic process	1.48E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	1.48E-04
24	GO:0010027: thylakoid membrane organization	1.65E-04
25	GO:0006352: DNA-templated transcription, initiation	2.65E-04
26	GO:0071668: plant-type cell wall assembly	3.38E-04
27	GO:0008616: queuosine biosynthetic process	3.38E-04
28	GO:0006568: tryptophan metabolic process	3.38E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.38E-04
30	GO:0006423: cysteinyl-tRNA aminoacylation	3.38E-04
31	GO:0019344: cysteine biosynthetic process	5.43E-04
32	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.54E-04
33	GO:0006518: peptide metabolic process	5.54E-04
34	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.93E-04
35	GO:2001141: regulation of RNA biosynthetic process	7.93E-04
36	GO:0051085: chaperone mediated protein folding requiring cofactor	7.93E-04
37	GO:0006241: CTP biosynthetic process	7.93E-04
38	GO:0006165: nucleoside diphosphate phosphorylation	7.93E-04
39	GO:0006228: UTP biosynthetic process	7.93E-04
40	GO:0015979: photosynthesis	1.03E-03
41	GO:0071483: cellular response to blue light	1.05E-03
42	GO:0006183: GTP biosynthetic process	1.05E-03
43	GO:0044206: UMP salvage	1.05E-03
44	GO:0010236: plastoquinone biosynthetic process	1.33E-03
45	GO:0045038: protein import into chloroplast thylakoid membrane	1.33E-03
46	GO:0043097: pyrimidine nucleoside salvage	1.33E-03
47	GO:0032502: developmental process	1.37E-03
48	GO:0006206: pyrimidine nucleobase metabolic process	1.63E-03
49	GO:0032973: amino acid export	1.63E-03
50	GO:0009790: embryo development	1.66E-03
51	GO:0030488: tRNA methylation	1.96E-03
52	GO:0010555: response to mannitol	1.96E-03
53	GO:0009955: adaxial/abaxial pattern specification	1.96E-03
54	GO:0042026: protein refolding	1.96E-03
55	GO:0042372: phylloquinone biosynthetic process	1.96E-03
56	GO:0017148: negative regulation of translation	1.96E-03
57	GO:0009772: photosynthetic electron transport in photosystem II	2.30E-03
58	GO:0043090: amino acid import	2.30E-03
59	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.30E-03
60	GO:0009642: response to light intensity	2.66E-03
61	GO:0042255: ribosome assembly	2.66E-03
62	GO:0006353: DNA-templated transcription, termination	2.66E-03
63	GO:0006605: protein targeting	2.66E-03
64	GO:0009657: plastid organization	3.04E-03
65	GO:0080144: amino acid homeostasis	3.44E-03
66	GO:0043067: regulation of programmed cell death	3.86E-03
67	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.86E-03
68	GO:0045036: protein targeting to chloroplast	4.29E-03
69	GO:0006535: cysteine biosynthetic process from serine	4.29E-03
70	GO:0006415: translational termination	4.73E-03
71	GO:0009073: aromatic amino acid family biosynthetic process	4.73E-03
72	GO:0043085: positive regulation of catalytic activity	4.73E-03
73	GO:0045037: protein import into chloroplast stroma	5.20E-03
74	GO:0045454: cell redox homeostasis	5.88E-03
75	GO:0090351: seedling development	6.67E-03
76	GO:0009116: nucleoside metabolic process	7.74E-03
77	GO:0061077: chaperone-mediated protein folding	8.85E-03
78	GO:0007005: mitochondrion organization	9.43E-03
79	GO:0009411: response to UV	1.00E-02
80	GO:0009306: protein secretion	1.06E-02
81	GO:0042742: defense response to bacterium	1.06E-02
82	GO:0016117: carotenoid biosynthetic process	1.13E-02
83	GO:0000271: polysaccharide biosynthetic process	1.19E-02
84	GO:0000413: protein peptidyl-prolyl isomerization	1.19E-02
85	GO:0006413: translational initiation	1.21E-02
86	GO:0006662: glycerol ether metabolic process	1.25E-02
87	GO:0010197: polar nucleus fusion	1.25E-02
88	GO:0009741: response to brassinosteroid	1.25E-02
89	GO:0045489: pectin biosynthetic process	1.25E-02
90	GO:0009409: response to cold	1.67E-02
91	GO:0009567: double fertilization forming a zygote and endosperm	1.67E-02
92	GO:0009627: systemic acquired resistance	2.04E-02
93	GO:0046686: response to cadmium ion	2.06E-02
94	GO:0006457: protein folding	2.20E-02
95	GO:0018298: protein-chromophore linkage	2.28E-02
96	GO:0008219: cell death	2.28E-02
97	GO:0016051: carbohydrate biosynthetic process	2.70E-02
98	GO:0009637: response to blue light	2.70E-02
99	GO:0034599: cellular response to oxidative stress	2.79E-02
100	GO:0042542: response to hydrogen peroxide	3.14E-02
101	GO:0010114: response to red light	3.23E-02
102	GO:0009793: embryo development ending in seed dormancy	3.67E-02
103	GO:0006812: cation transport	3.80E-02
104	GO:0006364: rRNA processing	4.00E-02
105	GO:0009585: red, far-red light phototransduction	4.00E-02
106	GO:0006096: glycolytic process	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
2	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
9	GO:0019843: rRNA binding	4.92E-18
10	GO:0003735: structural constituent of ribosome	1.25E-15
11	GO:0016851: magnesium chelatase activity	9.39E-06
12	GO:0001053: plastid sigma factor activity	1.75E-05
13	GO:0016987: sigma factor activity	1.75E-05
14	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.48E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.48E-04
16	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.48E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.48E-04
18	GO:0004655: porphobilinogen synthase activity	1.48E-04
19	GO:0004817: cysteine-tRNA ligase activity	3.38E-04
20	GO:0008479: queuine tRNA-ribosyltransferase activity	3.38E-04
21	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	5.54E-04
22	GO:0004148: dihydrolipoyl dehydrogenase activity	5.54E-04
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.57E-04
24	GO:0004550: nucleoside diphosphate kinase activity	7.93E-04
25	GO:0043023: ribosomal large subunit binding	7.93E-04
26	GO:0008097: 5S rRNA binding	7.93E-04
27	GO:0016149: translation release factor activity, codon specific	7.93E-04
28	GO:0004659: prenyltransferase activity	1.05E-03
29	GO:0004845: uracil phosphoribosyltransferase activity	1.05E-03
30	GO:0043495: protein anchor	1.05E-03
31	GO:0004040: amidase activity	1.33E-03
32	GO:0030414: peptidase inhibitor activity	1.33E-03
33	GO:0004124: cysteine synthase activity	1.96E-03
34	GO:0004849: uridine kinase activity	1.96E-03
35	GO:0019899: enzyme binding	2.30E-03
36	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.40E-03
37	GO:0008312: 7S RNA binding	2.66E-03
38	GO:0003746: translation elongation factor activity	3.03E-03
39	GO:0003747: translation release factor activity	3.44E-03
40	GO:0008047: enzyme activator activity	4.29E-03
41	GO:0044183: protein binding involved in protein folding	4.73E-03
42	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	5.25E-03
43	GO:0003729: mRNA binding	5.50E-03
44	GO:0008266: poly(U) RNA binding	6.17E-03
45	GO:0015035: protein disulfide oxidoreductase activity	7.69E-03
46	GO:0051536: iron-sulfur cluster binding	7.74E-03
47	GO:0005528: FK506 binding	7.74E-03
48	GO:0004176: ATP-dependent peptidase activity	8.85E-03
49	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.43E-03
50	GO:0022891: substrate-specific transmembrane transporter activity	1.00E-02
51	GO:0030170: pyridoxal phosphate binding	1.04E-02
52	GO:0003727: single-stranded RNA binding	1.06E-02
53	GO:0047134: protein-disulfide reductase activity	1.13E-02
54	GO:0004791: thioredoxin-disulfide reductase activity	1.32E-02
55	GO:0010181: FMN binding	1.32E-02
56	GO:0016887: ATPase activity	1.34E-02
57	GO:0003723: RNA binding	1.47E-02
58	GO:0003743: translation initiation factor activity	1.51E-02
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.59E-02
60	GO:0042802: identical protein binding	1.65E-02
61	GO:0008483: transaminase activity	1.74E-02
62	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.74E-02
63	GO:0008237: metallopeptidase activity	1.74E-02
64	GO:0016168: chlorophyll binding	1.97E-02
65	GO:0004222: metalloendopeptidase activity	2.45E-02
66	GO:0005525: GTP binding	2.97E-02
67	GO:0051537: 2 iron, 2 sulfur cluster binding	3.42E-02
68	GO:0003924: GTPase activity	3.67E-02
69	GO:0003690: double-stranded DNA binding	4.10E-02
70	GO:0015171: amino acid transmembrane transporter activity	4.30E-02
71	GO:0004650: polygalacturonase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	9.60E-58
3	GO:0009570: chloroplast stroma	8.32E-47
4	GO:0009941: chloroplast envelope	4.70E-32
5	GO:0005840: ribosome	8.99E-17
6	GO:0009579: thylakoid	4.93E-12
7	GO:0009535: chloroplast thylakoid membrane	1.04E-11
8	GO:0009534: chloroplast thylakoid	4.07E-06
9	GO:0009536: plastid	6.63E-06
10	GO:0000311: plastid large ribosomal subunit	8.58E-06
11	GO:0009295: nucleoid	1.40E-04
12	GO:0009547: plastid ribosome	1.48E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.48E-04
14	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	1.48E-04
15	GO:0009543: chloroplast thylakoid lumen	1.82E-04
16	GO:0015934: large ribosomal subunit	2.92E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	3.38E-04
18	GO:0009508: plastid chromosome	3.47E-04
19	GO:0000312: plastid small ribosomal subunit	3.92E-04
20	GO:0031977: thylakoid lumen	4.13E-04
21	GO:0010007: magnesium chelatase complex	5.54E-04
22	GO:0009509: chromoplast	5.54E-04
23	GO:0015935: small ribosomal subunit	6.55E-04
24	GO:0042646: plastid nucleoid	7.93E-04
25	GO:0016363: nuclear matrix	1.96E-03
26	GO:0009539: photosystem II reaction center	3.04E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.04E-03
28	GO:0022626: cytosolic ribosome	3.39E-03
29	GO:0005763: mitochondrial small ribosomal subunit	3.44E-03
30	GO:0032040: small-subunit processome	5.20E-03
31	GO:0009654: photosystem II oxygen evolving complex	8.29E-03
32	GO:0042651: thylakoid membrane	8.29E-03
33	GO:0048046: apoplast	8.74E-03
34	GO:0005623: cell	9.61E-03
35	GO:0009523: photosystem II	1.39E-02
36	GO:0022627: cytosolic small ribosomal subunit	1.72E-02
37	GO:0010319: stromule	1.74E-02
38	GO:0009707: chloroplast outer membrane	2.28E-02
39	GO:0031969: chloroplast membrane	2.49E-02
40	GO:0005622: intracellular	3.27E-02