Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G35960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045014: negative regulation of transcription by glucose0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006154: adenosine catabolic process0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0061157: mRNA destabilization0.00E+00
10GO:2000505: regulation of energy homeostasis0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I2.60E-11
12GO:0015979: photosynthesis3.05E-08
13GO:0006000: fructose metabolic process1.91E-07
14GO:0010206: photosystem II repair2.14E-06
15GO:0006094: gluconeogenesis1.21E-05
16GO:0030388: fructose 1,6-bisphosphate metabolic process1.49E-05
17GO:0006002: fructose 6-phosphate metabolic process5.74E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.05E-04
19GO:0015994: chlorophyll metabolic process1.80E-04
20GO:0006546: glycine catabolic process1.80E-04
21GO:0015995: chlorophyll biosynthetic process4.34E-04
22GO:0015969: guanosine tetraphosphate metabolic process5.87E-04
23GO:0000476: maturation of 4.5S rRNA5.87E-04
24GO:0000967: rRNA 5'-end processing5.87E-04
25GO:0043266: regulation of potassium ion transport5.87E-04
26GO:0071370: cellular response to gibberellin stimulus5.87E-04
27GO:0010480: microsporocyte differentiation5.87E-04
28GO:0031338: regulation of vesicle fusion5.87E-04
29GO:0000481: maturation of 5S rRNA5.87E-04
30GO:2000021: regulation of ion homeostasis5.87E-04
31GO:0006148: inosine catabolic process5.87E-04
32GO:0043609: regulation of carbon utilization5.87E-04
33GO:0010028: xanthophyll cycle5.87E-04
34GO:0034337: RNA folding5.87E-04
35GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.87E-04
36GO:0006810: transport8.00E-04
37GO:0009735: response to cytokinin8.21E-04
38GO:0009657: plastid organization9.85E-04
39GO:0008152: metabolic process1.11E-03
40GO:0048507: meristem development1.18E-03
41GO:0009644: response to high light intensity1.22E-03
42GO:1900871: chloroplast mRNA modification1.26E-03
43GO:0010541: acropetal auxin transport1.26E-03
44GO:0016122: xanthophyll metabolic process1.26E-03
45GO:0034470: ncRNA processing1.26E-03
46GO:0055129: L-proline biosynthetic process1.26E-03
47GO:0010205: photoinhibition1.39E-03
48GO:0009638: phototropism1.39E-03
49GO:1903507: negative regulation of nucleic acid-templated transcription1.88E-03
50GO:0006518: peptide metabolic process2.07E-03
51GO:0010160: formation of animal organ boundary2.07E-03
52GO:0043617: cellular response to sucrose starvation2.07E-03
53GO:0045493: xylan catabolic process2.07E-03
54GO:0090630: activation of GTPase activity2.07E-03
55GO:0071398: cellular response to fatty acid2.07E-03
56GO:2001295: malonyl-CoA biosynthetic process2.07E-03
57GO:0005983: starch catabolic process2.16E-03
58GO:0009718: anthocyanin-containing compound biosynthetic process2.45E-03
59GO:0005986: sucrose biosynthetic process2.45E-03
60GO:0080170: hydrogen peroxide transmembrane transport3.01E-03
61GO:0043481: anthocyanin accumulation in tissues in response to UV light3.01E-03
62GO:0009226: nucleotide-sugar biosynthetic process3.01E-03
63GO:0051016: barbed-end actin filament capping3.01E-03
64GO:1901332: negative regulation of lateral root development3.01E-03
65GO:0046836: glycolipid transport3.01E-03
66GO:0051513: regulation of monopolar cell growth3.01E-03
67GO:0071484: cellular response to light intensity3.01E-03
68GO:0034059: response to anoxia3.01E-03
69GO:0005985: sucrose metabolic process3.11E-03
70GO:0006833: water transport3.47E-03
71GO:0019464: glycine decarboxylation via glycine cleavage system4.06E-03
72GO:0045727: positive regulation of translation4.06E-03
73GO:0010023: proanthocyanidin biosynthetic process4.06E-03
74GO:0061077: chaperone-mediated protein folding4.68E-03
75GO:2000022: regulation of jasmonic acid mediated signaling pathway5.12E-03
76GO:0010158: abaxial cell fate specification5.21E-03
77GO:2000762: regulation of phenylpropanoid metabolic process5.21E-03
78GO:0016120: carotene biosynthetic process5.21E-03
79GO:0010117: photoprotection5.21E-03
80GO:0006461: protein complex assembly5.21E-03
81GO:1902183: regulation of shoot apical meristem development5.21E-03
82GO:0006633: fatty acid biosynthetic process5.88E-03
83GO:0048443: stamen development6.09E-03
84GO:0060918: auxin transport6.46E-03
85GO:1902456: regulation of stomatal opening6.46E-03
86GO:0000741: karyogamy6.46E-03
87GO:0006561: proline biosynthetic process6.46E-03
88GO:0006751: glutathione catabolic process6.46E-03
89GO:0042549: photosystem II stabilization6.46E-03
90GO:0010256: endomembrane system organization6.46E-03
91GO:0000470: maturation of LSU-rRNA6.46E-03
92GO:0045454: cell redox homeostasis7.12E-03
93GO:0034220: ion transmembrane transport7.14E-03
94GO:0009958: positive gravitropism7.71E-03
95GO:0009942: longitudinal axis specification7.81E-03
96GO:1900056: negative regulation of leaf senescence9.25E-03
97GO:0051693: actin filament capping9.25E-03
98GO:0048437: floral organ development9.25E-03
99GO:0010196: nonphotochemical quenching9.25E-03
100GO:1900057: positive regulation of leaf senescence9.25E-03
101GO:0009645: response to low light intensity stimulus9.25E-03
102GO:0009772: photosynthetic electron transport in photosystem II9.25E-03
103GO:0006857: oligopeptide transport9.31E-03
104GO:0008610: lipid biosynthetic process1.08E-02
105GO:0032508: DNA duplex unwinding1.08E-02
106GO:0010492: maintenance of shoot apical meristem identity1.08E-02
107GO:0009409: response to cold1.11E-02
108GO:0032544: plastid translation1.24E-02
109GO:0009932: cell tip growth1.24E-02
110GO:0071482: cellular response to light stimulus1.24E-02
111GO:0010027: thylakoid membrane organization1.39E-02
112GO:0009051: pentose-phosphate shunt, oxidative branch1.41E-02
113GO:0006098: pentose-phosphate shunt1.41E-02
114GO:0090305: nucleic acid phosphodiester bond hydrolysis1.41E-02
115GO:2000024: regulation of leaf development1.41E-02
116GO:0048589: developmental growth1.41E-02
117GO:0000902: cell morphogenesis1.41E-02
118GO:0005975: carbohydrate metabolic process1.44E-02
119GO:0042128: nitrate assimilation1.55E-02
120GO:0006779: porphyrin-containing compound biosynthetic process1.59E-02
121GO:1900865: chloroplast RNA modification1.59E-02
122GO:0009723: response to ethylene1.65E-02
123GO:0006782: protoporphyrinogen IX biosynthetic process1.77E-02
124GO:0018298: protein-chromophore linkage1.82E-02
125GO:0009733: response to auxin1.84E-02
126GO:0008285: negative regulation of cell proliferation1.96E-02
127GO:0006415: translational termination1.96E-02
128GO:0009750: response to fructose1.96E-02
129GO:0048229: gametophyte development1.96E-02
130GO:0009684: indoleacetic acid biosynthetic process1.96E-02
131GO:0010218: response to far red light2.00E-02
132GO:0010152: pollen maturation2.16E-02
133GO:0016024: CDP-diacylglycerol biosynthetic process2.16E-02
134GO:0008361: regulation of cell size2.16E-02
135GO:0010102: lateral root morphogenesis2.37E-02
136GO:0006006: glucose metabolic process2.37E-02
137GO:0030036: actin cytoskeleton organization2.37E-02
138GO:0018107: peptidyl-threonine phosphorylation2.37E-02
139GO:0010075: regulation of meristem growth2.37E-02
140GO:0009767: photosynthetic electron transport chain2.37E-02
141GO:0034599: cellular response to oxidative stress2.41E-02
142GO:0010143: cutin biosynthetic process2.58E-02
143GO:0007015: actin filament organization2.58E-02
144GO:0019253: reductive pentose-phosphate cycle2.58E-02
145GO:0010540: basipetal auxin transport2.58E-02
146GO:0009934: regulation of meristem structural organization2.58E-02
147GO:0007623: circadian rhythm2.68E-02
148GO:0010030: positive regulation of seed germination2.80E-02
149GO:0010053: root epidermal cell differentiation2.80E-02
150GO:0009611: response to wounding2.84E-02
151GO:0006636: unsaturated fatty acid biosynthetic process3.03E-02
152GO:0009944: polarity specification of adaxial/abaxial axis3.26E-02
153GO:0007010: cytoskeleton organization3.26E-02
154GO:0016575: histone deacetylation3.50E-02
155GO:0006418: tRNA aminoacylation for protein translation3.50E-02
156GO:0007017: microtubule-based process3.50E-02
157GO:0009768: photosynthesis, light harvesting in photosystem I3.50E-02
158GO:0031347: regulation of defense response3.60E-02
159GO:0009753: response to jasmonic acid3.60E-02
160GO:0042538: hyperosmotic salinity response3.73E-02
161GO:0010017: red or far-red light signaling pathway3.99E-02
162GO:0035428: hexose transmembrane transport3.99E-02
163GO:0006364: rRNA processing4.00E-02
164GO:0009585: red, far-red light phototransduction4.00E-02
165GO:0051603: proteolysis involved in cellular protein catabolic process4.14E-02
166GO:0009693: ethylene biosynthetic process4.25E-02
167GO:0006012: galactose metabolic process4.25E-02
168GO:0006284: base-excision repair4.51E-02
169GO:0009306: protein secretion4.51E-02
170GO:0006096: glycolytic process4.72E-02
171GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.77E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
12GO:0043014: alpha-tubulin binding0.00E+00
13GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
14GO:0004822: isoleucine-tRNA ligase activity0.00E+00
15GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
16GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
17GO:0005528: FK506 binding5.98E-10
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.58E-07
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.49E-05
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.80E-04
21GO:0008200: ion channel inhibitor activity3.83E-04
22GO:0004332: fructose-bisphosphate aldolase activity3.83E-04
23GO:0004017: adenylate kinase activity5.09E-04
24GO:0005096: GTPase activator activity5.51E-04
25GO:0004349: glutamate 5-kinase activity5.87E-04
26GO:0004856: xylulokinase activity5.87E-04
27GO:0004350: glutamate-5-semialdehyde dehydrogenase activity5.87E-04
28GO:0003867: 4-aminobutyrate transaminase activity5.87E-04
29GO:0045485: omega-6 fatty acid desaturase activity5.87E-04
30GO:0047622: adenosine nucleosidase activity5.87E-04
31GO:0050139: nicotinate-N-glucosyltransferase activity5.87E-04
32GO:0016787: hydrolase activity9.82E-04
33GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.26E-03
34GO:0008728: GTP diphosphokinase activity1.26E-03
35GO:0047746: chlorophyllase activity1.26E-03
36GO:0016868: intramolecular transferase activity, phosphotransferases1.26E-03
37GO:0003839: gamma-glutamylcyclotransferase activity1.26E-03
38GO:0005094: Rho GDP-dissociation inhibitor activity1.26E-03
39GO:0004047: aminomethyltransferase activity1.26E-03
40GO:0047724: inosine nucleosidase activity1.26E-03
41GO:0002161: aminoacyl-tRNA editing activity2.07E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity2.07E-03
43GO:0004075: biotin carboxylase activity2.07E-03
44GO:0030267: glyoxylate reductase (NADP) activity2.07E-03
45GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity2.07E-03
46GO:0004565: beta-galactosidase activity2.45E-03
47GO:0008236: serine-type peptidase activity2.90E-03
48GO:0004375: glycine dehydrogenase (decarboxylating) activity3.01E-03
49GO:0019201: nucleotide kinase activity3.01E-03
50GO:0048487: beta-tubulin binding3.01E-03
51GO:0016149: translation release factor activity, codon specific3.01E-03
52GO:0016851: magnesium chelatase activity3.01E-03
53GO:0001872: (1->3)-beta-D-glucan binding3.01E-03
54GO:0017089: glycolipid transporter activity3.01E-03
55GO:0003714: transcription corepressor activity3.85E-03
56GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.06E-03
57GO:0009044: xylan 1,4-beta-xylosidase activity4.06E-03
58GO:0046556: alpha-L-arabinofuranosidase activity4.06E-03
59GO:0010011: auxin binding4.06E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity4.06E-03
61GO:0016836: hydro-lyase activity4.06E-03
62GO:0051861: glycolipid binding4.06E-03
63GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed4.06E-03
64GO:0019843: rRNA binding4.15E-03
65GO:0005509: calcium ion binding4.52E-03
66GO:0004252: serine-type endopeptidase activity4.87E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor5.21E-03
68GO:0017137: Rab GTPase binding5.21E-03
69GO:0004040: amidase activity5.21E-03
70GO:0003989: acetyl-CoA carboxylase activity5.21E-03
71GO:0008725: DNA-3-methyladenine glycosylase activity5.21E-03
72GO:0004130: cytochrome-c peroxidase activity6.46E-03
73GO:0004556: alpha-amylase activity6.46E-03
74GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.46E-03
75GO:0042578: phosphoric ester hydrolase activity6.46E-03
76GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.46E-03
77GO:2001070: starch binding6.46E-03
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.81E-03
79GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.81E-03
80GO:0051920: peroxiredoxin activity7.81E-03
81GO:0004620: phospholipase activity9.25E-03
82GO:0048038: quinone binding9.54E-03
83GO:0004034: aldose 1-epimerase activity1.08E-02
84GO:0043022: ribosome binding1.08E-02
85GO:0004033: aldo-keto reductase (NADP) activity1.08E-02
86GO:0004564: beta-fructofuranosidase activity1.08E-02
87GO:0016209: antioxidant activity1.08E-02
88GO:0016791: phosphatase activity1.16E-02
89GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.24E-02
90GO:0015250: water channel activity1.39E-02
91GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.41E-02
92GO:0003747: translation release factor activity1.41E-02
93GO:0016168: chlorophyll binding1.47E-02
94GO:0004575: sucrose alpha-glucosidase activity1.59E-02
95GO:0005515: protein binding1.85E-02
96GO:0044183: protein binding involved in protein folding1.96E-02
97GO:0047372: acylglycerol lipase activity1.96E-02
98GO:0000049: tRNA binding2.16E-02
99GO:0008378: galactosyltransferase activity2.16E-02
100GO:0010329: auxin efflux transmembrane transporter activity2.37E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity2.37E-02
102GO:0031072: heat shock protein binding2.37E-02
103GO:0008266: poly(U) RNA binding2.58E-02
104GO:0004185: serine-type carboxypeptidase activity2.97E-02
105GO:0031409: pigment binding3.03E-02
106GO:0051537: 2 iron, 2 sulfur cluster binding3.22E-02
107GO:0031418: L-ascorbic acid binding3.26E-02
108GO:0004407: histone deacetylase activity3.26E-02
109GO:0015293: symporter activity3.34E-02
110GO:0015079: potassium ion transmembrane transporter activity3.50E-02
111GO:0042802: identical protein binding3.61E-02
112GO:0004176: ATP-dependent peptidase activity3.74E-02
113GO:0033612: receptor serine/threonine kinase binding3.74E-02
114GO:0022891: substrate-specific transmembrane transporter activity4.25E-02
115GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.33E-02
116GO:0003777: microtubule motor activity4.43E-02
117GO:0003756: protein disulfide isomerase activity4.51E-02
118GO:0003727: single-stranded RNA binding4.51E-02
119GO:0004601: peroxidase activity4.60E-02
120GO:0047134: protein-disulfide reductase activity4.77E-02
121GO:0004812: aminoacyl-tRNA ligase activity4.77E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0009507: chloroplast4.14E-47
5GO:0009534: chloroplast thylakoid2.24E-38
6GO:0009535: chloroplast thylakoid membrane7.92E-31
7GO:0009543: chloroplast thylakoid lumen1.21E-25
8GO:0009570: chloroplast stroma3.70E-20
9GO:0031977: thylakoid lumen3.56E-15
10GO:0009941: chloroplast envelope1.32E-14
11GO:0009579: thylakoid2.29E-12
12GO:0030095: chloroplast photosystem II1.47E-10
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.46E-10
14GO:0009654: photosystem II oxygen evolving complex1.59E-06
15GO:0019898: extrinsic component of membrane1.15E-05
16GO:0009533: chloroplast stromal thylakoid2.79E-05
17GO:0009782: photosystem I antenna complex5.87E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]5.87E-04
19GO:0009523: photosystem II1.26E-03
20GO:0008290: F-actin capping protein complex1.26E-03
21GO:0031969: chloroplast membrane1.41E-03
22GO:0010007: magnesium chelatase complex2.07E-03
23GO:0005960: glycine cleavage complex3.01E-03
24GO:0009531: secondary cell wall3.01E-03
25GO:0005775: vacuolar lumen3.01E-03
26GO:0009505: plant-type cell wall3.59E-03
27GO:0010287: plastoglobule3.82E-03
28GO:0042651: thylakoid membrane4.25E-03
29GO:0048046: apoplast5.03E-03
30GO:0016020: membrane5.94E-03
31GO:0009538: photosystem I reaction center1.08E-02
32GO:0010319: stromule1.23E-02
33GO:0008180: COP9 signalosome1.41E-02
34GO:0042644: chloroplast nucleoid1.41E-02
35GO:0045298: tubulin complex1.41E-02
36GO:0005618: cell wall1.41E-02
37GO:0005874: microtubule1.73E-02
38GO:0005884: actin filament1.96E-02
39GO:0032040: small-subunit processome2.16E-02
40GO:0009508: plastid chromosome2.37E-02
41GO:0030076: light-harvesting complex2.80E-02
42GO:0005871: kinesin complex4.77E-02
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Gene type



Gene DE type