co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:1902458: positive regulation of stomatal opening	0.00E+00
11	GO:0034337: RNA folding	0.00E+00
12	GO:0015979: photosynthesis	2.53E-15
13	GO:0015995: chlorophyll biosynthetic process	5.99E-12
14	GO:0006412: translation	1.04E-10
15	GO:0009773: photosynthetic electron transport in photosystem I	1.67E-10
16	GO:0032544: plastid translation	1.96E-09
17	GO:0042254: ribosome biogenesis	1.41E-08
18	GO:0090391: granum assembly	4.40E-08
19	GO:0009658: chloroplast organization	1.89E-07
20	GO:0009735: response to cytokinin	2.29E-07
21	GO:0010027: thylakoid membrane organization	4.85E-06
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.37E-06
23	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.37E-06
24	GO:0009409: response to cold	6.89E-06
25	GO:0009772: photosynthetic electron transport in photosystem II	7.41E-06
26	GO:0042742: defense response to bacterium	1.01E-05
27	GO:0006000: fructose metabolic process	1.89E-05
28	GO:0000413: protein peptidyl-prolyl isomerization	2.32E-05
29	GO:0006006: glucose metabolic process	7.45E-05
30	GO:0010207: photosystem II assembly	9.00E-05
31	GO:0019253: reductive pentose-phosphate cycle	9.00E-05
32	GO:0045038: protein import into chloroplast thylakoid membrane	1.16E-04
33	GO:0006655: phosphatidylglycerol biosynthetic process	1.68E-04
34	GO:0055114: oxidation-reduction process	1.84E-04
35	GO:0010196: nonphotochemical quenching	2.96E-04
36	GO:0016117: carotenoid biosynthetic process	3.13E-04
37	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.44E-04
38	GO:0009443: pyridoxal 5'-phosphate salvage	3.44E-04
39	GO:0046467: membrane lipid biosynthetic process	3.44E-04
40	GO:0043489: RNA stabilization	3.44E-04
41	GO:1904966: positive regulation of vitamin E biosynthetic process	3.44E-04
42	GO:0071370: cellular response to gibberellin stimulus	3.44E-04
43	GO:0000481: maturation of 5S rRNA	3.44E-04
44	GO:1904964: positive regulation of phytol biosynthetic process	3.44E-04
45	GO:0042371: vitamin K biosynthetic process	3.44E-04
46	GO:0071461: cellular response to redox state	3.44E-04
47	GO:0042255: ribosome assembly	3.72E-04
48	GO:2000070: regulation of response to water deprivation	3.72E-04
49	GO:0006002: fructose 6-phosphate metabolic process	4.56E-04
50	GO:0010206: photosystem II repair	5.47E-04
51	GO:0006783: heme biosynthetic process	5.47E-04
52	GO:0006754: ATP biosynthetic process	5.47E-04
53	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.51E-04
54	GO:0046741: transport of virus in host, tissue to tissue	7.51E-04
55	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.51E-04
56	GO:0080005: photosystem stoichiometry adjustment	7.51E-04
57	GO:0019388: galactose catabolic process	7.51E-04
58	GO:0018026: peptidyl-lysine monomethylation	7.51E-04
59	GO:0006782: protoporphyrinogen IX biosynthetic process	7.52E-04
60	GO:0019684: photosynthesis, light reaction	8.68E-04
61	GO:0016024: CDP-diacylglycerol biosynthetic process	9.90E-04
62	GO:0005986: sucrose biosynthetic process	1.12E-03
63	GO:0006094: gluconeogenesis	1.12E-03
64	GO:0006518: peptide metabolic process	1.21E-03
65	GO:0045493: xylan catabolic process	1.21E-03
66	GO:0010020: chloroplast fission	1.26E-03
67	GO:0005985: sucrose metabolic process	1.41E-03
68	GO:0006636: unsaturated fatty acid biosynthetic process	1.57E-03
69	GO:0034599: cellular response to oxidative stress	1.60E-03
70	GO:0009152: purine ribonucleotide biosynthetic process	1.75E-03
71	GO:0046653: tetrahydrofolate metabolic process	1.75E-03
72	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.75E-03
73	GO:0016556: mRNA modification	1.75E-03
74	GO:0009590: detection of gravity	1.75E-03
75	GO:0043572: plastid fission	1.75E-03
76	GO:2001141: regulation of RNA biosynthetic process	1.75E-03
77	GO:0019464: glycine decarboxylation via glycine cleavage system	2.35E-03
78	GO:0009765: photosynthesis, light harvesting	2.35E-03
79	GO:0045727: positive regulation of translation	2.35E-03
80	GO:2000122: negative regulation of stomatal complex development	2.35E-03
81	GO:0006546: glycine catabolic process	2.35E-03
82	GO:0010037: response to carbon dioxide	2.35E-03
83	GO:0015976: carbon utilization	2.35E-03
84	GO:0016123: xanthophyll biosynthetic process	3.00E-03
85	GO:0034052: positive regulation of plant-type hypersensitive response	3.00E-03
86	GO:0016120: carotene biosynthetic process	3.00E-03
87	GO:0010236: plastoquinone biosynthetic process	3.00E-03
88	GO:0031365: N-terminal protein amino acid modification	3.00E-03
89	GO:0009107: lipoate biosynthetic process	3.00E-03
90	GO:0006457: protein folding	3.23E-03
91	GO:0010190: cytochrome b6f complex assembly	3.71E-03
92	GO:0032973: amino acid export	3.71E-03
93	GO:0015986: ATP synthesis coupled proton transport	3.71E-03
94	GO:0042549: photosystem II stabilization	3.71E-03
95	GO:0019252: starch biosynthetic process	3.98E-03
96	GO:0006508: proteolysis	4.44E-03
97	GO:0071470: cellular response to osmotic stress	4.47E-03
98	GO:0042372: phylloquinone biosynthetic process	4.47E-03
99	GO:1901259: chloroplast rRNA processing	4.47E-03
100	GO:0010189: vitamin E biosynthetic process	4.47E-03
101	GO:0010555: response to mannitol	4.47E-03
102	GO:0032502: developmental process	4.55E-03
103	GO:0009395: phospholipid catabolic process	5.27E-03
104	GO:0043090: amino acid import	5.27E-03
105	GO:0006400: tRNA modification	5.27E-03
106	GO:0048564: photosystem I assembly	6.13E-03
107	GO:0005978: glycogen biosynthetic process	6.13E-03
108	GO:0010439: regulation of glucosinolate biosynthetic process	6.13E-03
109	GO:0009819: drought recovery	6.13E-03
110	GO:0009642: response to light intensity	6.13E-03
111	GO:0006353: DNA-templated transcription, termination	6.13E-03
112	GO:0043068: positive regulation of programmed cell death	6.13E-03
113	GO:0032508: DNA duplex unwinding	6.13E-03
114	GO:0071482: cellular response to light stimulus	7.03E-03
115	GO:0015996: chlorophyll catabolic process	7.03E-03
116	GO:0007186: G-protein coupled receptor signaling pathway	7.03E-03
117	GO:0009657: plastid organization	7.03E-03
118	GO:0017004: cytochrome complex assembly	7.03E-03
119	GO:0010411: xyloglucan metabolic process	7.26E-03
120	GO:0009051: pentose-phosphate shunt, oxidative branch	7.97E-03
121	GO:0080144: amino acid homeostasis	7.97E-03
122	GO:0009817: defense response to fungus, incompatible interaction	8.05E-03
123	GO:0018298: protein-chromophore linkage	8.05E-03
124	GO:0010205: photoinhibition	8.96E-03
125	GO:0006779: porphyrin-containing compound biosynthetic process	8.96E-03
126	GO:0009089: lysine biosynthetic process via diaminopimelate	1.11E-02
127	GO:0006415: translational termination	1.11E-02
128	GO:0006352: DNA-templated transcription, initiation	1.11E-02
129	GO:0000272: polysaccharide catabolic process	1.11E-02
130	GO:0018119: peptidyl-cysteine S-nitrosylation	1.11E-02
131	GO:0008380: RNA splicing	1.21E-02
132	GO:0045037: protein import into chloroplast stroma	1.22E-02
133	GO:0009767: photosynthetic electron transport chain	1.33E-02
134	GO:0010628: positive regulation of gene expression	1.33E-02
135	GO:0009793: embryo development ending in seed dormancy	1.53E-02
136	GO:0010167: response to nitrate	1.58E-02
137	GO:0006810: transport	1.64E-02
138	GO:0019344: cysteine biosynthetic process	1.83E-02
139	GO:0000027: ribosomal large subunit assembly	1.83E-02
140	GO:0009768: photosynthesis, light harvesting in photosystem I	1.96E-02
141	GO:0061077: chaperone-mediated protein folding	2.10E-02
142	GO:0080167: response to karrikin	2.21E-02
143	GO:0009814: defense response, incompatible interaction	2.24E-02
144	GO:0006012: galactose metabolic process	2.38E-02
145	GO:0009306: protein secretion	2.53E-02
146	GO:0045454: cell redox homeostasis	2.76E-02
147	GO:0042631: cellular response to water deprivation	2.83E-02
148	GO:0080022: primary root development	2.83E-02
149	GO:0008033: tRNA processing	2.83E-02
150	GO:0010182: sugar mediated signaling pathway	2.99E-02
151	GO:0002229: defense response to oomycetes	3.47E-02
152	GO:0000302: response to reactive oxygen species	3.47E-02
153	GO:0006635: fatty acid beta-oxidation	3.47E-02
154	GO:0019761: glucosinolate biosynthetic process	3.64E-02
155	GO:0009790: embryo development	3.72E-02
156	GO:0006464: cellular protein modification process	3.98E-02
157	GO:0006633: fatty acid biosynthetic process	4.00E-02
158	GO:0051607: defense response to virus	4.33E-02
159	GO:0009451: RNA modification	4.48E-02
160	GO:0009615: response to virus	4.51E-02
161	GO:0009627: systemic acquired resistance	4.87E-02
162	GO:0042128: nitrate assimilation	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
13	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
14	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
15	GO:0019843: rRNA binding	7.47E-21
16	GO:0003735: structural constituent of ribosome	7.95E-13
17	GO:0016851: magnesium chelatase activity	2.12E-07
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.19E-06
19	GO:0051920: peroxiredoxin activity	4.63E-06
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.37E-06
21	GO:0016209: antioxidant activity	1.12E-05
22	GO:0008266: poly(U) RNA binding	9.00E-05
23	GO:0003959: NADPH dehydrogenase activity	1.16E-04
24	GO:0004853: uroporphyrinogen decarboxylase activity	3.44E-04
25	GO:0045485: omega-6 fatty acid desaturase activity	3.44E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.44E-04
27	GO:0005509: calcium ion binding	6.54E-04
28	GO:0016415: octanoyltransferase activity	7.51E-04
29	GO:0016630: protochlorophyllide reductase activity	7.51E-04
30	GO:0004614: phosphoglucomutase activity	7.51E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.51E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.51E-04
33	GO:0008883: glutamyl-tRNA reductase activity	7.51E-04
34	GO:0017118: lipoyltransferase activity	7.51E-04
35	GO:0042389: omega-3 fatty acid desaturase activity	7.51E-04
36	GO:0010297: heteropolysaccharide binding	7.51E-04
37	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.51E-04
38	GO:0031072: heat shock protein binding	1.12E-03
39	GO:0004324: ferredoxin-NADP+ reductase activity	1.21E-03
40	GO:0004751: ribose-5-phosphate isomerase activity	1.21E-03
41	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.21E-03
42	GO:0070402: NADPH binding	1.21E-03
43	GO:0008864: formyltetrahydrofolate deformylase activity	1.21E-03
44	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.21E-03
45	GO:0004222: metalloendopeptidase activity	1.27E-03
46	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.75E-03
47	GO:0016149: translation release factor activity, codon specific	1.75E-03
48	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.75E-03
49	GO:0043023: ribosomal large subunit binding	1.75E-03
50	GO:0008097: 5S rRNA binding	1.75E-03
51	GO:0050661: NADP binding	1.79E-03
52	GO:0043424: protein histidine kinase binding	1.92E-03
53	GO:0004176: ATP-dependent peptidase activity	2.11E-03
54	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.35E-03
55	GO:0004045: aminoacyl-tRNA hydrolase activity	2.35E-03
56	GO:0016987: sigma factor activity	2.35E-03
57	GO:1990137: plant seed peroxidase activity	2.35E-03
58	GO:0052793: pectin acetylesterase activity	2.35E-03
59	GO:0009044: xylan 1,4-beta-xylosidase activity	2.35E-03
60	GO:0043495: protein anchor	2.35E-03
61	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.35E-03
62	GO:0046556: alpha-L-arabinofuranosidase activity	2.35E-03
63	GO:0004659: prenyltransferase activity	2.35E-03
64	GO:0016279: protein-lysine N-methyltransferase activity	2.35E-03
65	GO:0001053: plastid sigma factor activity	2.35E-03
66	GO:0003727: single-stranded RNA binding	2.74E-03
67	GO:0003690: double-stranded DNA binding	3.20E-03
68	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.45E-03
69	GO:0004130: cytochrome-c peroxidase activity	3.71E-03
70	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.71E-03
71	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.71E-03
72	GO:0042578: phosphoric ester hydrolase activity	3.71E-03
73	GO:0004601: peroxidase activity	3.88E-03
74	GO:0003723: RNA binding	4.27E-03
75	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.47E-03
76	GO:0008235: metalloexopeptidase activity	5.27E-03
77	GO:0019899: enzyme binding	5.27E-03
78	GO:0008237: metallopeptidase activity	5.49E-03
79	GO:0004034: aldose 1-epimerase activity	6.13E-03
80	GO:0004033: aldo-keto reductase (NADP) activity	6.13E-03
81	GO:0004564: beta-fructofuranosidase activity	6.13E-03
82	GO:0016168: chlorophyll binding	6.52E-03
83	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.03E-03
84	GO:0008236: serine-type peptidase activity	7.65E-03
85	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	7.97E-03
86	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.97E-03
87	GO:0003747: translation release factor activity	7.97E-03
88	GO:0004575: sucrose alpha-glucosidase activity	8.96E-03
89	GO:0030234: enzyme regulator activity	1.00E-02
90	GO:0004177: aminopeptidase activity	1.11E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	1.17E-02
92	GO:0016491: oxidoreductase activity	1.33E-02
93	GO:0004089: carbonate dehydratase activity	1.33E-02
94	GO:0003729: mRNA binding	1.68E-02
95	GO:0031409: pigment binding	1.70E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	1.72E-02
97	GO:0005528: FK506 binding	1.83E-02
98	GO:0030570: pectate lyase activity	2.38E-02
99	GO:0022891: substrate-specific transmembrane transporter activity	2.38E-02
100	GO:0003756: protein disulfide isomerase activity	2.53E-02
101	GO:0051082: unfolded protein binding	2.55E-02
102	GO:0008080: N-acetyltransferase activity	2.99E-02
103	GO:0016853: isomerase activity	3.15E-02
104	GO:0050662: coenzyme binding	3.15E-02
105	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.27E-02
106	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.47E-02
107	GO:0030246: carbohydrate binding	3.56E-02
108	GO:0009055: electron carrier activity	3.91E-02
109	GO:0051213: dioxygenase activity	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	1.70E-91
4	GO:0009570: chloroplast stroma	5.13E-47
5	GO:0009535: chloroplast thylakoid membrane	2.81E-42
6	GO:0009941: chloroplast envelope	1.24E-41
7	GO:0009579: thylakoid	1.54E-34
8	GO:0009534: chloroplast thylakoid	4.73E-30
9	GO:0009543: chloroplast thylakoid lumen	1.87E-29
10	GO:0031977: thylakoid lumen	7.60E-23
11	GO:0005840: ribosome	2.39E-14
12	GO:0009654: photosystem II oxygen evolving complex	4.76E-11
13	GO:0019898: extrinsic component of membrane	9.44E-10
14	GO:0010319: stromule	3.32E-09
15	GO:0010007: magnesium chelatase complex	4.40E-08
16	GO:0031969: chloroplast membrane	4.78E-07
17	GO:0000311: plastid large ribosomal subunit	1.61E-06
18	GO:0048046: apoplast	1.77E-06
19	GO:0030095: chloroplast photosystem II	2.90E-06
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.21E-05
21	GO:0009706: chloroplast inner membrane	1.36E-04
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.68E-04
23	GO:0042651: thylakoid membrane	1.70E-04
24	GO:0009533: chloroplast stromal thylakoid	2.96E-04
25	GO:0009344: nitrite reductase complex [NAD(P)H]	3.44E-04
26	GO:0009547: plastid ribosome	3.44E-04
27	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.51E-04
28	GO:0042170: plastid membrane	7.51E-04
29	GO:0032040: small-subunit processome	9.90E-04
30	GO:0010287: plastoglobule	1.12E-03
31	GO:0009528: plastid inner membrane	1.21E-03
32	GO:0033281: TAT protein transport complex	1.21E-03
33	GO:0009536: plastid	1.29E-03
34	GO:0015934: large ribosomal subunit	1.35E-03
35	GO:0005775: vacuolar lumen	1.75E-03
36	GO:0005960: glycine cleavage complex	1.75E-03
37	GO:0009532: plastid stroma	2.11E-03
38	GO:0009527: plastid outer membrane	2.35E-03
39	GO:0009544: chloroplast ATP synthase complex	2.35E-03
40	GO:0009523: photosystem II	3.98E-03
41	GO:0030529: intracellular ribonucleoprotein complex	6.16E-03
42	GO:0022626: cytosolic ribosome	6.32E-03
43	GO:0005811: lipid particle	7.03E-03
44	GO:0016020: membrane	9.06E-03
45	GO:0030076: light-harvesting complex	1.58E-02
46	GO:0043234: protein complex	1.70E-02
47	GO:0015935: small ribosomal subunit	2.10E-02
48	GO:0009522: photosystem I	3.15E-02
49	GO:0009505: plant-type cell wall	3.36E-02