GO Enrichment Analysis of Co-expressed Genes with
AT2G35370
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 2.41E-20 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 3.24E-14 |
| 7 | GO:0009735: response to cytokinin | 2.79E-07 |
| 8 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.45E-06 |
| 9 | GO:0006000: fructose metabolic process | 5.37E-06 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 1.71E-05 |
| 11 | GO:0010207: photosystem II assembly | 1.92E-05 |
| 12 | GO:0009409: response to cold | 2.26E-05 |
| 13 | GO:0009765: photosynthesis, light harvesting | 2.30E-05 |
| 14 | GO:0006546: glycine catabolic process | 2.30E-05 |
| 15 | GO:0000413: protein peptidyl-prolyl isomerization | 8.72E-05 |
| 16 | GO:0006810: transport | 1.59E-04 |
| 17 | GO:0006002: fructose 6-phosphate metabolic process | 1.65E-04 |
| 18 | GO:0032544: plastid translation | 1.65E-04 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.73E-04 |
| 20 | GO:0043489: RNA stabilization | 1.73E-04 |
| 21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.73E-04 |
| 22 | GO:1904964: positive regulation of phytol biosynthetic process | 1.73E-04 |
| 23 | GO:1902458: positive regulation of stomatal opening | 1.73E-04 |
| 24 | GO:0010206: photosystem II repair | 2.02E-04 |
| 25 | GO:0010027: thylakoid membrane organization | 2.25E-04 |
| 26 | GO:0018298: protein-chromophore linkage | 3.22E-04 |
| 27 | GO:0019684: photosynthesis, light reaction | 3.31E-04 |
| 28 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.31E-04 |
| 29 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.92E-04 |
| 30 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.92E-04 |
| 31 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.92E-04 |
| 32 | GO:0005986: sucrose biosynthetic process | 4.32E-04 |
| 33 | GO:0006094: gluconeogenesis | 4.32E-04 |
| 34 | GO:0019253: reductive pentose-phosphate cycle | 4.87E-04 |
| 35 | GO:0090391: granum assembly | 6.40E-04 |
| 36 | GO:0006518: peptide metabolic process | 6.40E-04 |
| 37 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.39E-04 |
| 38 | GO:0009658: chloroplast organization | 8.57E-04 |
| 39 | GO:0071484: cellular response to light intensity | 9.13E-04 |
| 40 | GO:0009152: purine ribonucleotide biosynthetic process | 9.13E-04 |
| 41 | GO:0046653: tetrahydrofolate metabolic process | 9.13E-04 |
| 42 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 9.13E-04 |
| 43 | GO:0010731: protein glutathionylation | 9.13E-04 |
| 44 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.13E-04 |
| 45 | GO:0051513: regulation of monopolar cell growth | 9.13E-04 |
| 46 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.21E-03 |
| 47 | GO:0045727: positive regulation of translation | 1.21E-03 |
| 48 | GO:0015994: chlorophyll metabolic process | 1.21E-03 |
| 49 | GO:2000122: negative regulation of stomatal complex development | 1.21E-03 |
| 50 | GO:0010037: response to carbon dioxide | 1.21E-03 |
| 51 | GO:0015976: carbon utilization | 1.21E-03 |
| 52 | GO:0034052: positive regulation of plant-type hypersensitive response | 1.54E-03 |
| 53 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.54E-03 |
| 54 | GO:0031365: N-terminal protein amino acid modification | 1.54E-03 |
| 55 | GO:0071470: cellular response to osmotic stress | 2.27E-03 |
| 56 | GO:0010019: chloroplast-nucleus signaling pathway | 2.27E-03 |
| 57 | GO:0010555: response to mannitol | 2.27E-03 |
| 58 | GO:0009772: photosynthetic electron transport in photosystem II | 2.67E-03 |
| 59 | GO:0010196: nonphotochemical quenching | 2.67E-03 |
| 60 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.67E-03 |
| 61 | GO:0009645: response to low light intensity stimulus | 2.67E-03 |
| 62 | GO:0009819: drought recovery | 3.09E-03 |
| 63 | GO:0009642: response to light intensity | 3.09E-03 |
| 64 | GO:0043068: positive regulation of programmed cell death | 3.09E-03 |
| 65 | GO:2000070: regulation of response to water deprivation | 3.09E-03 |
| 66 | GO:0010218: response to far red light | 3.29E-03 |
| 67 | GO:0009631: cold acclimation | 3.45E-03 |
| 68 | GO:0015996: chlorophyll catabolic process | 3.54E-03 |
| 69 | GO:0007186: G-protein coupled receptor signaling pathway | 3.54E-03 |
| 70 | GO:0006412: translation | 3.65E-03 |
| 71 | GO:0009637: response to blue light | 3.78E-03 |
| 72 | GO:0034599: cellular response to oxidative stress | 3.95E-03 |
| 73 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.00E-03 |
| 74 | GO:0042742: defense response to bacterium | 4.06E-03 |
| 75 | GO:0042254: ribosome biogenesis | 4.83E-03 |
| 76 | GO:0010114: response to red light | 4.86E-03 |
| 77 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 4.99E-03 |
| 78 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.52E-03 |
| 79 | GO:0000272: polysaccharide catabolic process | 5.52E-03 |
| 80 | GO:0045037: protein import into chloroplast stroma | 6.06E-03 |
| 81 | GO:0010628: positive regulation of gene expression | 6.61E-03 |
| 82 | GO:0006006: glucose metabolic process | 6.61E-03 |
| 83 | GO:0009767: photosynthetic electron transport chain | 6.61E-03 |
| 84 | GO:0010143: cutin biosynthetic process | 7.20E-03 |
| 85 | GO:0010020: chloroplast fission | 7.20E-03 |
| 86 | GO:0005985: sucrose metabolic process | 7.79E-03 |
| 87 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.41E-03 |
| 88 | GO:0019344: cysteine biosynthetic process | 9.03E-03 |
| 89 | GO:0000027: ribosomal large subunit assembly | 9.03E-03 |
| 90 | GO:0009269: response to desiccation | 1.03E-02 |
| 91 | GO:0048511: rhythmic process | 1.03E-02 |
| 92 | GO:0009814: defense response, incompatible interaction | 1.10E-02 |
| 93 | GO:0006012: galactose metabolic process | 1.17E-02 |
| 94 | GO:0042631: cellular response to water deprivation | 1.39E-02 |
| 95 | GO:0042335: cuticle development | 1.39E-02 |
| 96 | GO:0010182: sugar mediated signaling pathway | 1.47E-02 |
| 97 | GO:0015986: ATP synthesis coupled proton transport | 1.54E-02 |
| 98 | GO:0042752: regulation of circadian rhythm | 1.54E-02 |
| 99 | GO:0019252: starch biosynthetic process | 1.62E-02 |
| 100 | GO:0045490: pectin catabolic process | 1.62E-02 |
| 101 | GO:0000302: response to reactive oxygen species | 1.70E-02 |
| 102 | GO:0009817: defense response to fungus, incompatible interaction | 2.67E-02 |
| 103 | GO:0009407: toxin catabolic process | 2.87E-02 |
| 104 | GO:0006457: protein folding | 2.91E-02 |
| 105 | GO:0010119: regulation of stomatal movement | 2.96E-02 |
| 106 | GO:0007568: aging | 2.96E-02 |
| 107 | GO:0009853: photorespiration | 3.16E-02 |
| 108 | GO:0045087: innate immune response | 3.16E-02 |
| 109 | GO:0016051: carbohydrate biosynthetic process | 3.16E-02 |
| 110 | GO:0030001: metal ion transport | 3.47E-02 |
| 111 | GO:0045454: cell redox homeostasis | 3.72E-02 |
| 112 | GO:0009644: response to high light intensity | 4.01E-02 |
| 113 | GO:0006869: lipid transport | 4.07E-02 |
| 114 | GO:0009636: response to toxic substance | 4.12E-02 |
| 115 | GO:0032259: methylation | 4.38E-02 |
| 116 | GO:0006364: rRNA processing | 4.68E-02 |
| 117 | GO:0055114: oxidation-reduction process | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 3 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 6.28E-08 |
| 5 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.45E-06 |
| 6 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.16E-06 |
| 7 | GO:0016851: magnesium chelatase activity | 1.24E-05 |
| 8 | GO:0005509: calcium ion binding | 3.93E-05 |
| 9 | GO:0051920: peroxiredoxin activity | 7.74E-05 |
| 10 | GO:0016209: antioxidant activity | 1.32E-04 |
| 11 | GO:0016168: chlorophyll binding | 2.43E-04 |
| 12 | GO:0003735: structural constituent of ribosome | 3.59E-04 |
| 13 | GO:0004047: aminomethyltransferase activity | 3.92E-04 |
| 14 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.92E-04 |
| 15 | GO:0047746: chlorophyllase activity | 3.92E-04 |
| 16 | GO:0042389: omega-3 fatty acid desaturase activity | 3.92E-04 |
| 17 | GO:0010297: heteropolysaccharide binding | 3.92E-04 |
| 18 | GO:0031409: pigment binding | 6.07E-04 |
| 19 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.40E-04 |
| 20 | GO:0050734: hydroxycinnamoyltransferase activity | 6.40E-04 |
| 21 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 6.40E-04 |
| 22 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.40E-04 |
| 23 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.40E-04 |
| 24 | GO:0005528: FK506 binding | 6.71E-04 |
| 25 | GO:0043424: protein histidine kinase binding | 7.39E-04 |
| 26 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 9.13E-04 |
| 27 | GO:0030570: pectate lyase activity | 9.60E-04 |
| 28 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.21E-03 |
| 29 | GO:1990137: plant seed peroxidase activity | 1.21E-03 |
| 30 | GO:0043495: protein anchor | 1.21E-03 |
| 31 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.21E-03 |
| 32 | GO:0004130: cytochrome-c peroxidase activity | 1.89E-03 |
| 33 | GO:0042578: phosphoric ester hydrolase activity | 1.89E-03 |
| 34 | GO:0016688: L-ascorbate peroxidase activity | 1.89E-03 |
| 35 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.27E-03 |
| 36 | GO:0008235: metalloexopeptidase activity | 2.67E-03 |
| 37 | GO:0019899: enzyme binding | 2.67E-03 |
| 38 | GO:0004034: aldose 1-epimerase activity | 3.09E-03 |
| 39 | GO:0004222: metalloendopeptidase activity | 3.29E-03 |
| 40 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.54E-03 |
| 41 | GO:0004364: glutathione transferase activity | 4.67E-03 |
| 42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.26E-03 |
| 43 | GO:0004177: aminopeptidase activity | 5.52E-03 |
| 44 | GO:0004089: carbonate dehydratase activity | 6.61E-03 |
| 45 | GO:0031072: heat shock protein binding | 6.61E-03 |
| 46 | GO:0008266: poly(U) RNA binding | 7.20E-03 |
| 47 | GO:0046872: metal ion binding | 9.69E-03 |
| 48 | GO:0004176: ATP-dependent peptidase activity | 1.03E-02 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 1.17E-02 |
| 50 | GO:0003756: protein disulfide isomerase activity | 1.24E-02 |
| 51 | GO:0016829: lyase activity | 1.27E-02 |
| 52 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.47E-02 |
| 53 | GO:0016853: isomerase activity | 1.54E-02 |
| 54 | GO:0050662: coenzyme binding | 1.54E-02 |
| 55 | GO:0008289: lipid binding | 1.55E-02 |
| 56 | GO:0048038: quinone binding | 1.70E-02 |
| 57 | GO:0008483: transaminase activity | 2.04E-02 |
| 58 | GO:0008237: metallopeptidase activity | 2.04E-02 |
| 59 | GO:0042802: identical protein binding | 2.06E-02 |
| 60 | GO:0004601: peroxidase activity | 2.51E-02 |
| 61 | GO:0050661: NADP binding | 3.47E-02 |
| 62 | GO:0043621: protein self-association | 4.01E-02 |
| 63 | GO:0005198: structural molecule activity | 4.12E-02 |
| 64 | GO:0016787: hydrolase activity | 4.54E-02 |
| 65 | GO:0003690: double-stranded DNA binding | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.17E-50 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.13E-49 |
| 5 | GO:0009534: chloroplast thylakoid | 2.10E-38 |
| 6 | GO:0009941: chloroplast envelope | 2.91E-30 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 2.24E-28 |
| 8 | GO:0009579: thylakoid | 5.57E-27 |
| 9 | GO:0009570: chloroplast stroma | 3.01E-24 |
| 10 | GO:0031977: thylakoid lumen | 1.77E-16 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.18E-12 |
| 12 | GO:0019898: extrinsic component of membrane | 2.42E-11 |
| 13 | GO:0030095: chloroplast photosystem II | 2.86E-11 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.29E-10 |
| 15 | GO:0010287: plastoglobule | 5.16E-08 |
| 16 | GO:0010319: stromule | 2.59E-07 |
| 17 | GO:0010007: magnesium chelatase complex | 5.37E-06 |
| 18 | GO:0009706: chloroplast inner membrane | 1.45E-05 |
| 19 | GO:0042651: thylakoid membrane | 3.89E-05 |
| 20 | GO:0005840: ribosome | 5.88E-05 |
| 21 | GO:0009533: chloroplast stromal thylakoid | 1.03E-04 |
| 22 | GO:0009523: photosystem II | 1.21E-04 |
| 23 | GO:0009538: photosystem I reaction center | 1.32E-04 |
| 24 | GO:0009515: granal stacked thylakoid | 1.73E-04 |
| 25 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.73E-04 |
| 26 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.92E-04 |
| 27 | GO:0042170: plastid membrane | 3.92E-04 |
| 28 | GO:0030076: light-harvesting complex | 5.46E-04 |
| 29 | GO:0009528: plastid inner membrane | 6.40E-04 |
| 30 | GO:0015935: small ribosomal subunit | 8.10E-04 |
| 31 | GO:0009532: plastid stroma | 8.10E-04 |
| 32 | GO:0005960: glycine cleavage complex | 9.13E-04 |
| 33 | GO:0009517: PSII associated light-harvesting complex II | 1.21E-03 |
| 34 | GO:0009527: plastid outer membrane | 1.21E-03 |
| 35 | GO:0009522: photosystem I | 1.40E-03 |
| 36 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.89E-03 |
| 37 | GO:0005811: lipid particle | 3.54E-03 |
| 38 | GO:0048046: apoplast | 4.66E-03 |
| 39 | GO:0031969: chloroplast membrane | 6.20E-03 |
| 40 | GO:0022626: cytosolic ribosome | 1.99E-02 |
| 41 | GO:0030529: intracellular ribonucleoprotein complex | 2.21E-02 |
| 42 | GO:0009707: chloroplast outer membrane | 2.67E-02 |
| 43 | GO:0015934: large ribosomal subunit | 2.96E-02 |