GO Enrichment Analysis of Co-expressed Genes with
AT2G35260
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019284: L-methionine salvage from S-adenosylmethionine | 0.00E+00 |
| 2 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 6 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 2.80E-11 |
| 8 | GO:0015979: photosynthesis | 1.11E-06 |
| 9 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 2.15E-05 |
| 10 | GO:0006810: transport | 2.78E-05 |
| 11 | GO:0006094: gluconeogenesis | 3.19E-05 |
| 12 | GO:0015994: chlorophyll metabolic process | 3.91E-05 |
| 13 | GO:0006546: glycine catabolic process | 3.91E-05 |
| 14 | GO:0042549: photosystem II stabilization | 9.17E-05 |
| 15 | GO:0010480: microsporocyte differentiation | 2.36E-04 |
| 16 | GO:0031338: regulation of vesicle fusion | 2.36E-04 |
| 17 | GO:0000481: maturation of 5S rRNA | 2.36E-04 |
| 18 | GO:0010028: xanthophyll cycle | 2.36E-04 |
| 19 | GO:0034337: RNA folding | 2.36E-04 |
| 20 | GO:0015969: guanosine tetraphosphate metabolic process | 2.36E-04 |
| 21 | GO:0010206: photosystem II repair | 3.18E-04 |
| 22 | GO:0090342: regulation of cell aging | 5.24E-04 |
| 23 | GO:0016122: xanthophyll metabolic process | 5.24E-04 |
| 24 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 5.24E-04 |
| 25 | GO:1900871: chloroplast mRNA modification | 5.24E-04 |
| 26 | GO:0010541: acropetal auxin transport | 5.24E-04 |
| 27 | GO:0010218: response to far red light | 6.43E-04 |
| 28 | GO:0045454: cell redox homeostasis | 6.55E-04 |
| 29 | GO:0009637: response to blue light | 7.66E-04 |
| 30 | GO:0090630: activation of GTPase activity | 8.52E-04 |
| 31 | GO:2001295: malonyl-CoA biosynthetic process | 8.52E-04 |
| 32 | GO:0006000: fructose metabolic process | 8.52E-04 |
| 33 | GO:0010160: formation of animal organ boundary | 8.52E-04 |
| 34 | GO:0000280: nuclear division | 8.52E-04 |
| 35 | GO:0006518: peptide metabolic process | 8.52E-04 |
| 36 | GO:0008152: metabolic process | 1.12E-03 |
| 37 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.12E-03 |
| 38 | GO:0046836: glycolipid transport | 1.21E-03 |
| 39 | GO:0009067: aspartate family amino acid biosynthetic process | 1.21E-03 |
| 40 | GO:0051513: regulation of monopolar cell growth | 1.21E-03 |
| 41 | GO:0080170: hydrogen peroxide transmembrane transport | 1.21E-03 |
| 42 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.21E-03 |
| 43 | GO:1901332: negative regulation of lateral root development | 1.21E-03 |
| 44 | GO:0010021: amylopectin biosynthetic process | 1.62E-03 |
| 45 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.62E-03 |
| 46 | GO:0045727: positive regulation of translation | 1.62E-03 |
| 47 | GO:0051205: protein insertion into membrane | 1.62E-03 |
| 48 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.07E-03 |
| 49 | GO:0006461: protein complex assembly | 2.07E-03 |
| 50 | GO:0016120: carotene biosynthetic process | 2.07E-03 |
| 51 | GO:0009735: response to cytokinin | 2.20E-03 |
| 52 | GO:0019252: starch biosynthetic process | 2.31E-03 |
| 53 | GO:0010256: endomembrane system organization | 2.55E-03 |
| 54 | GO:0009913: epidermal cell differentiation | 2.55E-03 |
| 55 | GO:0060918: auxin transport | 2.55E-03 |
| 56 | GO:0009088: threonine biosynthetic process | 3.06E-03 |
| 57 | GO:0019509: L-methionine salvage from methylthioadenosine | 3.06E-03 |
| 58 | GO:0010027: thylakoid membrane organization | 3.56E-03 |
| 59 | GO:0009772: photosynthetic electron transport in photosystem II | 3.61E-03 |
| 60 | GO:0048437: floral organ development | 3.61E-03 |
| 61 | GO:0010196: nonphotochemical quenching | 3.61E-03 |
| 62 | GO:0032508: DNA duplex unwinding | 4.19E-03 |
| 63 | GO:0010492: maintenance of shoot apical meristem identity | 4.19E-03 |
| 64 | GO:0005978: glycogen biosynthetic process | 4.19E-03 |
| 65 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 4.19E-03 |
| 66 | GO:0015995: chlorophyll biosynthetic process | 4.19E-03 |
| 67 | GO:0018298: protein-chromophore linkage | 4.64E-03 |
| 68 | GO:0032544: plastid translation | 4.79E-03 |
| 69 | GO:0006002: fructose 6-phosphate metabolic process | 4.79E-03 |
| 70 | GO:0071482: cellular response to light stimulus | 4.79E-03 |
| 71 | GO:0009657: plastid organization | 4.79E-03 |
| 72 | GO:0006098: pentose-phosphate shunt | 5.43E-03 |
| 73 | GO:0048507: meristem development | 5.43E-03 |
| 74 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 5.43E-03 |
| 75 | GO:0010205: photoinhibition | 6.09E-03 |
| 76 | GO:0048229: gametophyte development | 7.50E-03 |
| 77 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.50E-03 |
| 78 | GO:0010114: response to red light | 7.57E-03 |
| 79 | GO:0008361: regulation of cell size | 8.25E-03 |
| 80 | GO:0005983: starch catabolic process | 8.25E-03 |
| 81 | GO:0018107: peptidyl-threonine phosphorylation | 9.02E-03 |
| 82 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.02E-03 |
| 83 | GO:0010075: regulation of meristem growth | 9.02E-03 |
| 84 | GO:0009767: photosynthetic electron transport chain | 9.02E-03 |
| 85 | GO:0005986: sucrose biosynthetic process | 9.02E-03 |
| 86 | GO:0010540: basipetal auxin transport | 9.82E-03 |
| 87 | GO:0009934: regulation of meristem structural organization | 9.82E-03 |
| 88 | GO:0010143: cutin biosynthetic process | 9.82E-03 |
| 89 | GO:0019253: reductive pentose-phosphate cycle | 9.82E-03 |
| 90 | GO:0010207: photosystem II assembly | 9.82E-03 |
| 91 | GO:0005985: sucrose metabolic process | 1.06E-02 |
| 92 | GO:0035556: intracellular signal transduction | 1.09E-02 |
| 93 | GO:0006833: water transport | 1.15E-02 |
| 94 | GO:0006096: glycolytic process | 1.21E-02 |
| 95 | GO:0016575: histone deacetylation | 1.32E-02 |
| 96 | GO:0007017: microtubule-based process | 1.32E-02 |
| 97 | GO:0061077: chaperone-mediated protein folding | 1.42E-02 |
| 98 | GO:0018105: peptidyl-serine phosphorylation | 1.50E-02 |
| 99 | GO:0035428: hexose transmembrane transport | 1.51E-02 |
| 100 | GO:0032259: methylation | 1.70E-02 |
| 101 | GO:0048443: stamen development | 1.70E-02 |
| 102 | GO:0005975: carbohydrate metabolic process | 1.82E-02 |
| 103 | GO:0034220: ion transmembrane transport | 1.91E-02 |
| 104 | GO:0048653: anther development | 1.91E-02 |
| 105 | GO:0006662: glycerol ether metabolic process | 2.01E-02 |
| 106 | GO:0046323: glucose import | 2.01E-02 |
| 107 | GO:0009958: positive gravitropism | 2.01E-02 |
| 108 | GO:0015986: ATP synthesis coupled proton transport | 2.12E-02 |
| 109 | GO:0048825: cotyledon development | 2.23E-02 |
| 110 | GO:0010193: response to ozone | 2.34E-02 |
| 111 | GO:0007623: circadian rhythm | 2.53E-02 |
| 112 | GO:1901657: glycosyl compound metabolic process | 2.56E-02 |
| 113 | GO:0030163: protein catabolic process | 2.56E-02 |
| 114 | GO:0009639: response to red or far red light | 2.68E-02 |
| 115 | GO:0071805: potassium ion transmembrane transport | 2.80E-02 |
| 116 | GO:0006979: response to oxidative stress | 2.91E-02 |
| 117 | GO:0001666: response to hypoxia | 3.04E-02 |
| 118 | GO:0042128: nitrate assimilation | 3.29E-02 |
| 119 | GO:0009738: abscisic acid-activated signaling pathway | 3.52E-02 |
| 120 | GO:0009416: response to light stimulus | 3.67E-02 |
| 121 | GO:0009817: defense response to fungus, incompatible interaction | 3.67E-02 |
| 122 | GO:0010311: lateral root formation | 3.80E-02 |
| 123 | GO:0009658: chloroplast organization | 3.90E-02 |
| 124 | GO:0048527: lateral root development | 4.07E-02 |
| 125 | GO:0006865: amino acid transport | 4.20E-02 |
| 126 | GO:0045893: positive regulation of transcription, DNA-templated | 4.34E-02 |
| 127 | GO:0034599: cellular response to oxidative stress | 4.48E-02 |
| 128 | GO:0006631: fatty acid metabolic process | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 7 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 8 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 9 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 10 | GO:0046570: methylthioribulose 1-phosphate dehydratase activity | 0.00E+00 |
| 11 | GO:0043874: acireductone synthase activity | 0.00E+00 |
| 12 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 13 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 14 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.91E-05 |
| 15 | GO:0004332: fructose-bisphosphate aldolase activity | 9.17E-05 |
| 16 | GO:0004017: adenylate kinase activity | 1.27E-04 |
| 17 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 2.36E-04 |
| 18 | GO:0004856: xylulokinase activity | 2.36E-04 |
| 19 | GO:0008728: GTP diphosphokinase activity | 5.24E-04 |
| 20 | GO:0047746: chlorophyllase activity | 5.24E-04 |
| 21 | GO:0016868: intramolecular transferase activity, phosphotransferases | 5.24E-04 |
| 22 | GO:0004047: aminomethyltransferase activity | 5.24E-04 |
| 23 | GO:0033201: alpha-1,4-glucan synthase activity | 5.24E-04 |
| 24 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 5.24E-04 |
| 25 | GO:0004373: glycogen (starch) synthase activity | 8.52E-04 |
| 26 | GO:0050734: hydroxycinnamoyltransferase activity | 8.52E-04 |
| 27 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.52E-04 |
| 28 | GO:0004075: biotin carboxylase activity | 8.52E-04 |
| 29 | GO:0031409: pigment binding | 9.25E-04 |
| 30 | GO:0005528: FK506 binding | 1.02E-03 |
| 31 | GO:0015079: potassium ion transmembrane transporter activity | 1.12E-03 |
| 32 | GO:0017089: glycolipid transporter activity | 1.21E-03 |
| 33 | GO:0004072: aspartate kinase activity | 1.21E-03 |
| 34 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.21E-03 |
| 35 | GO:0019201: nucleotide kinase activity | 1.21E-03 |
| 36 | GO:0048487: beta-tubulin binding | 1.21E-03 |
| 37 | GO:0016787: hydrolase activity | 1.28E-03 |
| 38 | GO:0051861: glycolipid binding | 1.62E-03 |
| 39 | GO:0009011: starch synthase activity | 1.62E-03 |
| 40 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.62E-03 |
| 41 | GO:0003989: acetyl-CoA carboxylase activity | 2.07E-03 |
| 42 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.07E-03 |
| 43 | GO:0017137: Rab GTPase binding | 2.07E-03 |
| 44 | GO:0005509: calcium ion binding | 2.22E-03 |
| 45 | GO:0048038: quinone binding | 2.47E-03 |
| 46 | GO:0004556: alpha-amylase activity | 2.55E-03 |
| 47 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 3.06E-03 |
| 48 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.06E-03 |
| 49 | GO:0004602: glutathione peroxidase activity | 3.06E-03 |
| 50 | GO:0016168: chlorophyll binding | 3.76E-03 |
| 51 | GO:0004033: aldo-keto reductase (NADP) activity | 4.19E-03 |
| 52 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.79E-03 |
| 53 | GO:0015078: hydrogen ion transmembrane transporter activity | 4.79E-03 |
| 54 | GO:0005096: GTPase activator activity | 4.87E-03 |
| 55 | GO:0015386: potassium:proton antiporter activity | 7.50E-03 |
| 56 | GO:0051537: 2 iron, 2 sulfur cluster binding | 8.19E-03 |
| 57 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.84E-03 |
| 58 | GO:0031072: heat shock protein binding | 9.02E-03 |
| 59 | GO:0004565: beta-galactosidase activity | 9.02E-03 |
| 60 | GO:0010329: auxin efflux transmembrane transporter activity | 9.02E-03 |
| 61 | GO:0004022: alcohol dehydrogenase (NAD) activity | 9.02E-03 |
| 62 | GO:0008266: poly(U) RNA binding | 9.82E-03 |
| 63 | GO:0004407: histone deacetylase activity | 1.24E-02 |
| 64 | GO:0004707: MAP kinase activity | 1.42E-02 |
| 65 | GO:0004176: ATP-dependent peptidase activity | 1.42E-02 |
| 66 | GO:0033612: receptor serine/threonine kinase binding | 1.42E-02 |
| 67 | GO:0030570: pectate lyase activity | 1.61E-02 |
| 68 | GO:0003756: protein disulfide isomerase activity | 1.70E-02 |
| 69 | GO:0047134: protein-disulfide reductase activity | 1.80E-02 |
| 70 | GO:0016829: lyase activity | 1.98E-02 |
| 71 | GO:0004791: thioredoxin-disulfide reductase activity | 2.12E-02 |
| 72 | GO:0005355: glucose transmembrane transporter activity | 2.12E-02 |
| 73 | GO:0050662: coenzyme binding | 2.12E-02 |
| 74 | GO:0004518: nuclease activity | 2.45E-02 |
| 75 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.56E-02 |
| 76 | GO:0005200: structural constituent of cytoskeleton | 2.80E-02 |
| 77 | GO:0008483: transaminase activity | 2.80E-02 |
| 78 | GO:0016597: amino acid binding | 2.92E-02 |
| 79 | GO:0015250: water channel activity | 3.04E-02 |
| 80 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 3.29E-02 |
| 81 | GO:0004683: calmodulin-dependent protein kinase activity | 3.41E-02 |
| 82 | GO:0102483: scopolin beta-glucosidase activity | 3.41E-02 |
| 83 | GO:0004721: phosphoprotein phosphatase activity | 3.41E-02 |
| 84 | GO:0008236: serine-type peptidase activity | 3.54E-02 |
| 85 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.67E-02 |
| 86 | GO:0008168: methyltransferase activity | 3.76E-02 |
| 87 | GO:0046872: metal ion binding | 3.80E-02 |
| 88 | GO:0015238: drug transmembrane transporter activity | 3.80E-02 |
| 89 | GO:0004222: metalloendopeptidase activity | 3.93E-02 |
| 90 | GO:0030145: manganese ion binding | 4.07E-02 |
| 91 | GO:0050897: cobalt ion binding | 4.07E-02 |
| 92 | GO:0016491: oxidoreductase activity | 4.28E-02 |
| 93 | GO:0003746: translation elongation factor activity | 4.34E-02 |
| 94 | GO:0008422: beta-glucosidase activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.47E-41 |
| 4 | GO:0009534: chloroplast thylakoid | 2.83E-35 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.12E-30 |
| 6 | GO:0009941: chloroplast envelope | 2.90E-23 |
| 7 | GO:0009570: chloroplast stroma | 3.41E-21 |
| 8 | GO:0030095: chloroplast photosystem II | 1.20E-10 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 5.39E-10 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.83E-10 |
| 11 | GO:0009579: thylakoid | 4.38E-09 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 2.86E-06 |
| 13 | GO:0010287: plastoglobule | 4.63E-06 |
| 14 | GO:0009523: photosystem II | 1.20E-05 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 7.67E-05 |
| 16 | GO:0031977: thylakoid lumen | 1.08E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 2.24E-04 |
| 18 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.36E-04 |
| 19 | GO:0031969: chloroplast membrane | 4.75E-04 |
| 20 | GO:0042651: thylakoid membrane | 1.12E-03 |
| 21 | GO:0009531: secondary cell wall | 1.21E-03 |
| 22 | GO:0005960: glycine cleavage complex | 1.21E-03 |
| 23 | GO:0009522: photosystem I | 2.15E-03 |
| 24 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 2.55E-03 |
| 25 | GO:0009501: amyloplast | 4.19E-03 |
| 26 | GO:0009538: photosystem I reaction center | 4.19E-03 |
| 27 | GO:0042644: chloroplast nucleoid | 5.43E-03 |
| 28 | GO:0045298: tubulin complex | 5.43E-03 |
| 29 | GO:0016020: membrane | 5.64E-03 |
| 30 | GO:0032040: small-subunit processome | 8.25E-03 |
| 31 | GO:0009508: plastid chromosome | 9.02E-03 |
| 32 | GO:0030076: light-harvesting complex | 1.06E-02 |
| 33 | GO:0048046: apoplast | 1.22E-02 |
| 34 | GO:0009505: plant-type cell wall | 1.31E-02 |
| 35 | GO:0010319: stromule | 2.80E-02 |
| 36 | GO:0009295: nucleoid | 2.80E-02 |
| 37 | GO:0016021: integral component of membrane | 4.73E-02 |