co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G34460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
7	GO:0071482: cellular response to light stimulus	1.50E-04
8	GO:0006824: cobalt ion transport	1.62E-04
9	GO:0043266: regulation of potassium ion transport	1.62E-04
10	GO:0031338: regulation of vesicle fusion	1.62E-04
11	GO:0071461: cellular response to redox state	1.62E-04
12	GO:2000021: regulation of ion homeostasis	1.62E-04
13	GO:0034755: iron ion transmembrane transport	3.69E-04
14	GO:0080005: photosystem stoichiometry adjustment	3.69E-04
15	GO:0045717: negative regulation of fatty acid biosynthetic process	3.69E-04
16	GO:0010289: homogalacturonan biosynthetic process	3.69E-04
17	GO:0010270: photosystem II oxygen evolving complex assembly	3.69E-04
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.69E-04
19	GO:0006518: peptide metabolic process	6.04E-04
20	GO:0090630: activation of GTPase activity	6.04E-04
21	GO:0061077: chaperone-mediated protein folding	7.44E-04
22	GO:0042989: sequestering of actin monomers	8.63E-04
23	GO:0016556: mRNA modification	8.63E-04
24	GO:0043572: plastid fission	8.63E-04
25	GO:2001141: regulation of RNA biosynthetic process	8.63E-04
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.63E-04
27	GO:0010371: regulation of gibberellin biosynthetic process	8.63E-04
28	GO:0006020: inositol metabolic process	8.63E-04
29	GO:0009152: purine ribonucleotide biosynthetic process	8.63E-04
30	GO:0046653: tetrahydrofolate metabolic process	8.63E-04
31	GO:0031122: cytoplasmic microtubule organization	1.14E-03
32	GO:0006546: glycine catabolic process	1.14E-03
33	GO:0006021: inositol biosynthetic process	1.14E-03
34	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.14E-03
35	GO:0010021: amylopectin biosynthetic process	1.14E-03
36	GO:0016120: carotene biosynthetic process	1.45E-03
37	GO:0030041: actin filament polymerization	1.45E-03
38	GO:0048497: maintenance of floral organ identity	1.45E-03
39	GO:0006828: manganese ion transport	1.78E-03
40	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.78E-03
41	GO:0046855: inositol phosphate dephosphorylation	1.78E-03
42	GO:0009913: epidermal cell differentiation	1.78E-03
43	GO:0006655: phosphatidylglycerol biosynthetic process	1.78E-03
44	GO:0010405: arabinogalactan protein metabolic process	1.78E-03
45	GO:0042549: photosystem II stabilization	1.78E-03
46	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.78E-03
47	GO:0042026: protein refolding	2.14E-03
48	GO:0006458: 'de novo' protein folding	2.14E-03
49	GO:0015995: chlorophyll biosynthetic process	2.47E-03
50	GO:0051510: regulation of unidimensional cell growth	2.52E-03
51	GO:0008610: lipid biosynthetic process	2.91E-03
52	GO:0010206: photosystem II repair	3.77E-03
53	GO:0000373: Group II intron splicing	3.77E-03
54	GO:0006779: porphyrin-containing compound biosynthetic process	4.22E-03
55	GO:0006782: protoporphyrinogen IX biosynthetic process	4.69E-03
56	GO:0019538: protein metabolic process	4.69E-03
57	GO:0008285: negative regulation of cell proliferation	5.19E-03
58	GO:1903507: negative regulation of nucleic acid-templated transcription	5.19E-03
59	GO:0006352: DNA-templated transcription, initiation	5.19E-03
60	GO:0006816: calcium ion transport	5.19E-03
61	GO:0006820: anion transport	5.69E-03
62	GO:0005983: starch catabolic process	5.69E-03
63	GO:0016024: CDP-diacylglycerol biosynthetic process	5.69E-03
64	GO:0006790: sulfur compound metabolic process	5.69E-03
65	GO:0010102: lateral root morphogenesis	6.22E-03
66	GO:0018107: peptidyl-threonine phosphorylation	6.22E-03
67	GO:0009718: anthocyanin-containing compound biosynthetic process	6.22E-03
68	GO:0010020: chloroplast fission	6.76E-03
69	GO:0010207: photosystem II assembly	6.76E-03
70	GO:0071732: cellular response to nitric oxide	7.32E-03
71	GO:0090351: seedling development	7.32E-03
72	GO:0046854: phosphatidylinositol phosphorylation	7.32E-03
73	GO:0007010: cytoskeleton organization	8.48E-03
74	GO:0016042: lipid catabolic process	8.75E-03
75	GO:0018105: peptidyl-serine phosphorylation	8.78E-03
76	GO:0010073: meristem maintenance	9.09E-03
77	GO:0008299: isoprenoid biosynthetic process	9.09E-03
78	GO:0008152: metabolic process	1.03E-02
79	GO:0006730: one-carbon metabolic process	1.04E-02
80	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.04E-02
81	GO:0071369: cellular response to ethylene stimulus	1.10E-02
82	GO:0010227: floral organ abscission	1.10E-02
83	GO:0009845: seed germination	1.16E-02
84	GO:0016117: carotenoid biosynthetic process	1.24E-02
85	GO:0000413: protein peptidyl-prolyl isomerization	1.31E-02
86	GO:0048825: cotyledon development	1.52E-02
87	GO:0019252: starch biosynthetic process	1.52E-02
88	GO:0071281: cellular response to iron ion	1.75E-02
89	GO:0010027: thylakoid membrane organization	2.07E-02
90	GO:0016126: sterol biosynthetic process	2.07E-02
91	GO:0009658: chloroplast organization	2.29E-02
92	GO:0006810: transport	2.30E-02
93	GO:0009817: defense response to fungus, incompatible interaction	2.51E-02
94	GO:0048527: lateral root development	2.78E-02
95	GO:0006865: amino acid transport	2.87E-02
96	GO:0016051: carbohydrate biosynthetic process	2.97E-02
97	GO:0009853: photorespiration	2.97E-02
98	GO:0006839: mitochondrial transport	3.26E-02
99	GO:0009640: photomorphogenesis	3.55E-02
100	GO:0006855: drug transmembrane transport	3.97E-02
101	GO:0031347: regulation of defense response	4.07E-02
102	GO:0006629: lipid metabolic process	4.18E-02
103	GO:0006812: cation transport	4.18E-02
104	GO:0042538: hyperosmotic salinity response	4.18E-02
105	GO:0006857: oligopeptide transport	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
4	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
5	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
6	GO:0005528: FK506 binding	5.73E-07
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.30E-06
8	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.99E-05
9	GO:0050308: sugar-phosphatase activity	1.62E-04
10	GO:0004856: xylulokinase activity	1.62E-04
11	GO:0008568: microtubule-severing ATPase activity	1.62E-04
12	GO:0019203: carbohydrate phosphatase activity	1.62E-04
13	GO:0004163: diphosphomevalonate decarboxylase activity	1.62E-04
14	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.62E-04
15	GO:0005227: calcium activated cation channel activity	1.62E-04
16	GO:0008934: inositol monophosphate 1-phosphatase activity	3.69E-04
17	GO:0052833: inositol monophosphate 4-phosphatase activity	3.69E-04
18	GO:0004047: aminomethyltransferase activity	3.69E-04
19	GO:0052832: inositol monophosphate 3-phosphatase activity	3.69E-04
20	GO:0033201: alpha-1,4-glucan synthase activity	3.69E-04
21	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.69E-04
22	GO:0004373: glycogen (starch) synthase activity	6.04E-04
23	GO:0030267: glyoxylate reductase (NADP) activity	6.04E-04
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.04E-04
25	GO:0070402: NADPH binding	6.04E-04
26	GO:0008864: formyltetrahydrofolate deformylase activity	6.04E-04
27	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.04E-04
28	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.04E-04
29	GO:0016788: hydrolase activity, acting on ester bonds	7.70E-04
30	GO:0019201: nucleotide kinase activity	8.63E-04
31	GO:0052793: pectin acetylesterase activity	1.14E-03
32	GO:0009011: starch synthase activity	1.14E-03
33	GO:0001053: plastid sigma factor activity	1.14E-03
34	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.14E-03
35	GO:0016987: sigma factor activity	1.14E-03
36	GO:0052689: carboxylic ester hydrolase activity	1.20E-03
37	GO:0016787: hydrolase activity	1.20E-03
38	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.45E-03
39	GO:0017137: Rab GTPase binding	1.45E-03
40	GO:0003785: actin monomer binding	1.45E-03
41	GO:0008381: mechanically-gated ion channel activity	1.45E-03
42	GO:0035673: oligopeptide transmembrane transporter activity	1.78E-03
43	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.78E-03
44	GO:0042578: phosphoric ester hydrolase activity	1.78E-03
45	GO:2001070: starch binding	1.78E-03
46	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.78E-03
47	GO:0015631: tubulin binding	2.14E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.14E-03
49	GO:0004017: adenylate kinase activity	2.14E-03
50	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.14E-03
51	GO:0004222: metalloendopeptidase activity	3.01E-03
52	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.77E-03
53	GO:0005381: iron ion transmembrane transporter activity	4.22E-03
54	GO:0005384: manganese ion transmembrane transporter activity	4.22E-03
55	GO:0047617: acyl-CoA hydrolase activity	4.22E-03
56	GO:0044183: protein binding involved in protein folding	5.19E-03
57	GO:0047372: acylglycerol lipase activity	5.19E-03
58	GO:0015198: oligopeptide transporter activity	5.69E-03
59	GO:0004565: beta-galactosidase activity	6.22E-03
60	GO:0004022: alcohol dehydrogenase (NAD) activity	6.22E-03
61	GO:0004089: carbonate dehydratase activity	6.22E-03
62	GO:0015095: magnesium ion transmembrane transporter activity	6.22E-03
63	GO:0003714: transcription corepressor activity	8.48E-03
64	GO:0043424: protein histidine kinase binding	9.09E-03
65	GO:0004176: ATP-dependent peptidase activity	9.72E-03
66	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.04E-02
67	GO:0016853: isomerase activity	1.45E-02
68	GO:0048038: quinone binding	1.60E-02
69	GO:0008483: transaminase activity	1.91E-02
70	GO:0008237: metallopeptidase activity	1.91E-02
71	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.24E-02
72	GO:0004721: phosphoprotein phosphatase activity	2.33E-02
73	GO:0004683: calmodulin-dependent protein kinase activity	2.33E-02
74	GO:0008236: serine-type peptidase activity	2.42E-02
75	GO:0015238: drug transmembrane transporter activity	2.60E-02
76	GO:0005096: GTPase activator activity	2.60E-02
77	GO:0030246: carbohydrate binding	2.73E-02
78	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.78E-02
79	GO:0030145: manganese ion binding	2.78E-02
80	GO:0005509: calcium ion binding	4.09E-02
81	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.39E-02
82	GO:0015171: amino acid transmembrane transporter activity	4.72E-02
83	GO:0045330: aspartyl esterase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.37E-28
2	GO:0009570: chloroplast stroma	1.28E-12
3	GO:0009941: chloroplast envelope	3.31E-07
4	GO:0009534: chloroplast thylakoid	6.17E-07
5	GO:0009543: chloroplast thylakoid lumen	1.11E-06
6	GO:0009535: chloroplast thylakoid membrane	2.55E-06
7	GO:0031977: thylakoid lumen	4.00E-05
8	GO:0031969: chloroplast membrane	1.72E-04
9	GO:0009579: thylakoid	3.09E-04
10	GO:0009533: chloroplast stromal thylakoid	2.52E-03
11	GO:0009501: amyloplast	2.91E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.77E-03
13	GO:0005938: cell cortex	6.22E-03
14	GO:0009706: chloroplast inner membrane	8.52E-03
15	GO:0015629: actin cytoskeleton	1.10E-02
16	GO:0009536: plastid	1.76E-02