Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G34060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0000372: Group I intron splicing0.00E+00
10GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0009773: photosynthetic electron transport in photosystem I8.38E-08
13GO:0032544: plastid translation8.74E-07
14GO:0042254: ribosome biogenesis2.59E-06
15GO:0006412: translation1.13E-05
16GO:0006518: peptide metabolic process3.92E-05
17GO:0015994: chlorophyll metabolic process1.45E-04
18GO:0009767: photosynthetic electron transport chain1.78E-04
19GO:0010207: photosystem II assembly2.13E-04
20GO:0045038: protein import into chloroplast thylakoid membrane2.22E-04
21GO:0010027: thylakoid membrane organization2.41E-04
22GO:0042549: photosystem II stabilization3.14E-04
23GO:0015979: photosynthesis3.17E-04
24GO:0000481: maturation of 5S rRNA5.15E-04
25GO:0042547: cell wall modification involved in multidimensional cell growth5.15E-04
26GO:0065002: intracellular protein transmembrane transport5.15E-04
27GO:2000021: regulation of ion homeostasis5.15E-04
28GO:0034628: 'de novo' NAD biosynthetic process from aspartate5.15E-04
29GO:0010028: xanthophyll cycle5.15E-04
30GO:0034337: RNA folding5.15E-04
31GO:0010450: inflorescence meristem growth5.15E-04
32GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.15E-04
33GO:0000476: maturation of 4.5S rRNA5.15E-04
34GO:0000967: rRNA 5'-end processing5.15E-04
35GO:0043953: protein transport by the Tat complex5.15E-04
36GO:0043266: regulation of potassium ion transport5.15E-04
37GO:0010480: microsporocyte differentiation5.15E-04
38GO:0000373: Group II intron splicing9.74E-04
39GO:0010206: photosystem II repair9.74E-04
40GO:0016122: xanthophyll metabolic process1.11E-03
41GO:0030388: fructose 1,6-bisphosphate metabolic process1.11E-03
42GO:0010270: photosystem II oxygen evolving complex assembly1.11E-03
43GO:0034470: ncRNA processing1.11E-03
44GO:0016560: protein import into peroxisome matrix, docking1.11E-03
45GO:1900871: chloroplast mRNA modification1.11E-03
46GO:0034755: iron ion transmembrane transport1.11E-03
47GO:0006779: porphyrin-containing compound biosynthetic process1.15E-03
48GO:1900865: chloroplast RNA modification1.15E-03
49GO:0006810: transport1.20E-03
50GO:0019684: photosynthesis, light reaction1.55E-03
51GO:0009073: aromatic amino acid family biosynthetic process1.55E-03
52GO:0006096: glycolytic process1.63E-03
53GO:0009735: response to cytokinin1.67E-03
54GO:0051176: positive regulation of sulfur metabolic process1.81E-03
55GO:2001295: malonyl-CoA biosynthetic process1.81E-03
56GO:0045165: cell fate commitment1.81E-03
57GO:0006000: fructose metabolic process1.81E-03
58GO:0006954: inflammatory response1.81E-03
59GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.81E-03
60GO:0006094: gluconeogenesis2.01E-03
61GO:0009658: chloroplast organization2.50E-03
62GO:0008152: metabolic process2.51E-03
63GO:0055070: copper ion homeostasis2.63E-03
64GO:2001141: regulation of RNA biosynthetic process2.63E-03
65GO:0006515: misfolded or incompletely synthesized protein catabolic process2.63E-03
66GO:0033014: tetrapyrrole biosynthetic process2.63E-03
67GO:0016556: mRNA modification2.63E-03
68GO:0006418: tRNA aminoacylation for protein translation3.49E-03
69GO:0010109: regulation of photosynthesis3.54E-03
70GO:0045727: positive regulation of translation3.54E-03
71GO:0006546: glycine catabolic process3.54E-03
72GO:1901601: strigolactone biosynthetic process3.54E-03
73GO:0061077: chaperone-mediated protein folding3.83E-03
74GO:0009793: embryo development ending in seed dormancy4.19E-03
75GO:0016226: iron-sulfur cluster assembly4.20E-03
76GO:0035434: copper ion transmembrane transport4.54E-03
77GO:1902183: regulation of shoot apical meristem development4.54E-03
78GO:0009435: NAD biosynthetic process4.54E-03
79GO:0010158: abaxial cell fate specification4.54E-03
80GO:0006465: signal peptide processing4.54E-03
81GO:0009247: glycolipid biosynthetic process4.54E-03
82GO:0032543: mitochondrial translation4.54E-03
83GO:0006564: L-serine biosynthetic process4.54E-03
84GO:0009644: response to high light intensity4.99E-03
85GO:0006354: DNA-templated transcription, elongation5.63E-03
86GO:0010405: arabinogalactan protein metabolic process5.63E-03
87GO:0006751: glutathione catabolic process5.63E-03
88GO:0000470: maturation of LSU-rRNA5.63E-03
89GO:0006655: phosphatidylglycerol biosynthetic process5.63E-03
90GO:0016554: cytidine to uridine editing5.63E-03
91GO:0010190: cytochrome b6f complex assembly5.63E-03
92GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.63E-03
93GO:0006828: manganese ion transport5.63E-03
94GO:0032973: amino acid export5.63E-03
95GO:0018258: protein O-linked glycosylation via hydroxyproline5.63E-03
96GO:0000741: karyogamy5.63E-03
97GO:0000413: protein peptidyl-prolyl isomerization5.85E-03
98GO:0009741: response to brassinosteroid6.31E-03
99GO:0006364: rRNA processing6.60E-03
100GO:0042026: protein refolding6.79E-03
101GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.79E-03
102GO:0006458: 'de novo' protein folding6.79E-03
103GO:0051510: regulation of unidimensional cell growth8.04E-03
104GO:0043090: amino acid import8.04E-03
105GO:0006821: chloride transport8.04E-03
106GO:0048437: floral organ development8.04E-03
107GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.04E-03
108GO:0010196: nonphotochemical quenching8.04E-03
109GO:1900057: positive regulation of leaf senescence8.04E-03
110GO:0009645: response to low light intensity stimulus8.04E-03
111GO:0010492: maintenance of shoot apical meristem identity9.36E-03
112GO:0006605: protein targeting9.36E-03
113GO:0019375: galactolipid biosynthetic process9.36E-03
114GO:0010078: maintenance of root meristem identity9.36E-03
115GO:0032508: DNA duplex unwinding9.36E-03
116GO:0043562: cellular response to nitrogen levels1.08E-02
117GO:0017004: cytochrome complex assembly1.08E-02
118GO:0010093: specification of floral organ identity1.08E-02
119GO:0006002: fructose 6-phosphate metabolic process1.08E-02
120GO:0071482: cellular response to light stimulus1.08E-02
121GO:0009060: aerobic respiration1.22E-02
122GO:0009051: pentose-phosphate shunt, oxidative branch1.22E-02
123GO:0009821: alkaloid biosynthetic process1.22E-02
124GO:0006098: pentose-phosphate shunt1.22E-02
125GO:0080144: amino acid homeostasis1.22E-02
126GO:2000024: regulation of leaf development1.22E-02
127GO:0048507: meristem development1.22E-02
128GO:0006783: heme biosynthetic process1.22E-02
129GO:0042128: nitrate assimilation1.27E-02
130GO:0015995: chlorophyll biosynthetic process1.34E-02
131GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process1.38E-02
132GO:0010205: photoinhibition1.38E-02
133GO:0018298: protein-chromophore linkage1.48E-02
134GO:0006782: protoporphyrinogen IX biosynthetic process1.54E-02
135GO:0009750: response to fructose1.70E-02
136GO:0018119: peptidyl-cysteine S-nitrosylation1.70E-02
137GO:0016485: protein processing1.70E-02
138GO:0048229: gametophyte development1.70E-02
139GO:0009684: indoleacetic acid biosynthetic process1.70E-02
140GO:0006816: calcium ion transport1.70E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.70E-02
142GO:0006879: cellular iron ion homeostasis1.70E-02
143GO:0006352: DNA-templated transcription, initiation1.70E-02
144GO:0048527: lateral root development1.72E-02
145GO:0006633: fatty acid biosynthetic process1.85E-02
146GO:0005983: starch catabolic process1.88E-02
147GO:0016024: CDP-diacylglycerol biosynthetic process1.88E-02
148GO:0006006: glucose metabolic process2.05E-02
149GO:0018107: peptidyl-threonine phosphorylation2.05E-02
150GO:0010075: regulation of meristem growth2.05E-02
151GO:0005986: sucrose biosynthetic process2.05E-02
152GO:0010588: cotyledon vascular tissue pattern formation2.05E-02
153GO:0010628: positive regulation of gene expression2.05E-02
154GO:0030001: metal ion transport2.15E-02
155GO:0010223: secondary shoot formation2.24E-02
156GO:0009934: regulation of meristem structural organization2.24E-02
157GO:0048467: gynoecium development2.24E-02
158GO:0009933: meristem structural organization2.24E-02
159GO:0019253: reductive pentose-phosphate cycle2.24E-02
160GO:0090351: seedling development2.43E-02
161GO:0006636: unsaturated fatty acid biosynthetic process2.62E-02
162GO:0009944: polarity specification of adaxial/abaxial axis2.83E-02
163GO:0006457: protein folding3.02E-02
164GO:0016575: histone deacetylation3.03E-02
165GO:0009768: photosynthesis, light harvesting in photosystem I3.03E-02
166GO:0019915: lipid storage3.24E-02
167GO:0051603: proteolysis involved in cellular protein catabolic process3.39E-02
168GO:0009814: defense response, incompatible interaction3.46E-02
169GO:0006730: one-carbon metabolic process3.46E-02
170GO:0040007: growth3.68E-02
171GO:0009561: megagametogenesis3.90E-02
172GO:0009723: response to ethylene4.30E-02
173GO:0010087: phloem or xylem histogenesis4.37E-02
174GO:0048653: anther development4.37E-02
175GO:0080022: primary root development4.37E-02
176GO:0010197: polar nucleus fusion4.61E-02
177GO:0009958: positive gravitropism4.61E-02
178GO:0010154: fruit development4.61E-02
179GO:0006814: sodium ion transport4.85E-02
180GO:0009646: response to absence of light4.85E-02
181GO:0009742: brassinosteroid mediated signaling pathway4.92E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0008987: quinolinate synthetase A activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004823: leucine-tRNA ligase activity0.00E+00
14GO:0019843: rRNA binding1.07E-15
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.41E-09
16GO:0005528: FK506 binding1.61E-08
17GO:0003735: structural constituent of ribosome6.24E-08
18GO:0002161: aminoacyl-tRNA editing activity3.92E-05
19GO:0016787: hydrolase activity5.42E-05
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.19E-04
21GO:0003867: 4-aminobutyrate transaminase activity5.15E-04
22GO:0004325: ferrochelatase activity5.15E-04
23GO:0045485: omega-6 fatty acid desaturase activity5.15E-04
24GO:0047746: chlorophyllase activity1.11E-03
25GO:0004618: phosphoglycerate kinase activity1.11E-03
26GO:0003839: gamma-glutamylcyclotransferase activity1.11E-03
27GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.11E-03
28GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.11E-03
29GO:0009977: proton motive force dependent protein transmembrane transporter activity1.11E-03
30GO:0004617: phosphoglycerate dehydrogenase activity1.11E-03
31GO:0004047: aminomethyltransferase activity1.11E-03
32GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.11E-03
33GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.11E-03
34GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.11E-03
35GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.11E-03
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.11E-03
37GO:0030267: glyoxylate reductase (NADP) activity1.81E-03
38GO:0015462: ATPase-coupled protein transmembrane transporter activity1.81E-03
39GO:0016531: copper chaperone activity1.81E-03
40GO:0019829: cation-transporting ATPase activity1.81E-03
41GO:0004075: biotin carboxylase activity1.81E-03
42GO:0031072: heat shock protein binding2.01E-03
43GO:0008236: serine-type peptidase activity2.26E-03
44GO:0008266: poly(U) RNA binding2.27E-03
45GO:0008097: 5S rRNA binding2.63E-03
46GO:0008508: bile acid:sodium symporter activity2.63E-03
47GO:0001872: (1->3)-beta-D-glucan binding2.63E-03
48GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.63E-03
49GO:0035250: UDP-galactosyltransferase activity2.63E-03
50GO:0048487: beta-tubulin binding2.63E-03
51GO:0016851: magnesium chelatase activity2.63E-03
52GO:0004222: metalloendopeptidase activity2.73E-03
53GO:0003723: RNA binding3.12E-03
54GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.54E-03
55GO:0001053: plastid sigma factor activity3.54E-03
56GO:0004345: glucose-6-phosphate dehydrogenase activity3.54E-03
57GO:0016836: hydro-lyase activity3.54E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.54E-03
59GO:0016987: sigma factor activity3.54E-03
60GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.54E-03
61GO:0004252: serine-type endopeptidase activity3.59E-03
62GO:0003989: acetyl-CoA carboxylase activity4.54E-03
63GO:0008374: O-acyltransferase activity4.54E-03
64GO:0016846: carbon-sulfur lyase activity4.54E-03
65GO:0004812: aminoacyl-tRNA ligase activity5.41E-03
66GO:0005247: voltage-gated chloride channel activity5.63E-03
67GO:1990714: hydroxyproline O-galactosyltransferase activity5.63E-03
68GO:0004332: fructose-bisphosphate aldolase activity5.63E-03
69GO:0004130: cytochrome-c peroxidase activity5.63E-03
70GO:0042578: phosphoric ester hydrolase activity5.63E-03
71GO:0051920: peroxiredoxin activity6.79E-03
72GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.79E-03
73GO:0004519: endonuclease activity8.39E-03
74GO:0016209: antioxidant activity9.36E-03
75GO:0008312: 7S RNA binding9.36E-03
76GO:0043022: ribosome binding9.36E-03
77GO:0004033: aldo-keto reductase (NADP) activity9.36E-03
78GO:0051082: unfolded protein binding1.04E-02
79GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.08E-02
80GO:0005375: copper ion transmembrane transporter activity1.08E-02
81GO:0016168: chlorophyll binding1.20E-02
82GO:0016844: strictosidine synthase activity1.38E-02
83GO:0005381: iron ion transmembrane transporter activity1.38E-02
84GO:0005384: manganese ion transmembrane transporter activity1.38E-02
85GO:0008047: enzyme activator activity1.54E-02
86GO:0044183: protein binding involved in protein folding1.70E-02
87GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.72E-02
88GO:0000049: tRNA binding1.88E-02
89GO:0015095: magnesium ion transmembrane transporter activity2.05E-02
90GO:0004565: beta-galactosidase activity2.05E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity2.05E-02
92GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.05E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.24E-02
94GO:0004185: serine-type carboxypeptidase activity2.43E-02
95GO:0046872: metal ion binding2.47E-02
96GO:0031409: pigment binding2.62E-02
97GO:0051537: 2 iron, 2 sulfur cluster binding2.63E-02
98GO:0009055: electron carrier activity2.69E-02
99GO:0051536: iron-sulfur cluster binding2.83E-02
100GO:0004407: histone deacetylase activity2.83E-02
101GO:0003824: catalytic activity2.97E-02
102GO:0043424: protein histidine kinase binding3.03E-02
103GO:0015079: potassium ion transmembrane transporter activity3.03E-02
104GO:0004176: ATP-dependent peptidase activity3.24E-02
105GO:0033612: receptor serine/threonine kinase binding3.24E-02
106GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.28E-02
107GO:0008168: methyltransferase activity3.43E-02
108GO:0022891: substrate-specific transmembrane transporter activity3.68E-02
109GO:0030570: pectate lyase activity3.68E-02
110GO:0016491: oxidoreductase activity4.15E-02
111GO:0050662: coenzyme binding4.85E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0043233: organelle lumen0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0044391: ribosomal subunit0.00E+00
7GO:0009507: chloroplast3.10E-79
8GO:0009570: chloroplast stroma9.05E-43
9GO:0009535: chloroplast thylakoid membrane9.42E-39
10GO:0009941: chloroplast envelope1.17E-31
11GO:0009534: chloroplast thylakoid7.56E-29
12GO:0009543: chloroplast thylakoid lumen6.16E-25
13GO:0009579: thylakoid4.05E-13
14GO:0031977: thylakoid lumen4.09E-11
15GO:0005840: ribosome3.77E-09
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.88E-08
17GO:0080085: signal recognition particle, chloroplast targeting1.16E-05
18GO:0009533: chloroplast stromal thylakoid2.03E-05
19GO:0010287: plastoglobule1.03E-04
20GO:0030095: chloroplast photosystem II2.13E-04
21GO:0009654: photosystem II oxygen evolving complex3.84E-04
22GO:0009547: plastid ribosome5.15E-04
23GO:0031361: integral component of thylakoid membrane5.15E-04
24GO:0009782: photosystem I antenna complex5.15E-04
25GO:0000428: DNA-directed RNA polymerase complex5.15E-04
26GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.15E-04
27GO:0031969: chloroplast membrane9.55E-04
28GO:0019898: extrinsic component of membrane9.85E-04
29GO:0000311: plastid large ribosomal subunit1.77E-03
30GO:0005782: peroxisomal matrix1.81E-03
31GO:0033281: TAT protein transport complex1.81E-03
32GO:0010007: magnesium chelatase complex1.81E-03
33GO:0009536: plastid2.02E-03
34GO:0000312: plastid small ribosomal subunit2.27E-03
35GO:0015934: large ribosomal subunit2.90E-03
36GO:0055035: plastid thylakoid membrane4.54E-03
37GO:0034707: chloride channel complex5.63E-03
38GO:0016020: membrane5.85E-03
39GO:0009523: photosystem II7.28E-03
40GO:0046658: anchored component of plasma membrane7.68E-03
41GO:0009706: chloroplast inner membrane1.04E-02
42GO:0030529: intracellular ribonucleoprotein complex1.13E-02
43GO:0008180: COP9 signalosome1.22E-02
44GO:0022626: cytosolic ribosome1.81E-02
45GO:0032040: small-subunit processome1.88E-02
46GO:0030076: light-harvesting complex2.43E-02
47GO:0042651: thylakoid membrane3.03E-02
48GO:0015935: small ribosomal subunit3.24E-02
49GO:0009532: plastid stroma3.24E-02
50GO:0009522: photosystem I4.85E-02
51GO:0022625: cytosolic large ribosomal subunit4.97E-02
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Gene type



Gene DE type