Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G33330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0006223: uracil salvage0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0060416: response to growth hormone0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:1905499: trichome papilla formation0.00E+00
12GO:0032544: plastid translation5.22E-09
13GO:0006412: translation8.42E-06
14GO:1901259: chloroplast rRNA processing8.52E-06
15GO:0009658: chloroplast organization8.75E-06
16GO:0042254: ribosome biogenesis9.35E-06
17GO:0010027: thylakoid membrane organization1.18E-05
18GO:0006633: fatty acid biosynthetic process1.38E-05
19GO:0015995: chlorophyll biosynthetic process1.77E-05
20GO:0006353: DNA-templated transcription, termination2.01E-05
21GO:0016123: xanthophyll biosynthetic process1.71E-04
22GO:0032543: mitochondrial translation1.71E-04
23GO:0010236: plastoquinone biosynthetic process1.71E-04
24GO:0010411: xyloglucan metabolic process2.11E-04
25GO:0006655: phosphatidylglycerol biosynthetic process2.44E-04
26GO:0042372: phylloquinone biosynthetic process3.27E-04
27GO:0010444: guard mother cell differentiation4.22E-04
28GO:0043007: maintenance of rDNA4.37E-04
29GO:0034337: RNA folding4.37E-04
30GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway4.37E-04
31GO:0006434: seryl-tRNA aminoacylation4.37E-04
32GO:1903409: reactive oxygen species biosynthetic process4.37E-04
33GO:0005980: glycogen catabolic process4.37E-04
34GO:0006438: valyl-tRNA aminoacylation4.37E-04
35GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.37E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process4.37E-04
37GO:1904964: positive regulation of phytol biosynthetic process4.37E-04
38GO:0042371: vitamin K biosynthetic process4.37E-04
39GO:0042546: cell wall biogenesis5.87E-04
40GO:0032502: developmental process8.59E-04
41GO:0071258: cellular response to gravity9.44E-04
42GO:0006529: asparagine biosynthetic process9.44E-04
43GO:0008616: queuosine biosynthetic process9.44E-04
44GO:2000123: positive regulation of stomatal complex development9.44E-04
45GO:0043039: tRNA aminoacylation9.44E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process9.44E-04
47GO:0070981: L-asparagine biosynthetic process9.44E-04
48GO:0045717: negative regulation of fatty acid biosynthetic process9.44E-04
49GO:0018026: peptidyl-lysine monomethylation9.44E-04
50GO:0080148: negative regulation of response to water deprivation9.44E-04
51GO:0016024: CDP-diacylglycerol biosynthetic process1.39E-03
52GO:0006518: peptide metabolic process1.54E-03
53GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.54E-03
54GO:0071555: cell wall organization1.87E-03
55GO:0009793: embryo development ending in seed dormancy2.11E-03
56GO:0010371: regulation of gibberellin biosynthetic process2.22E-03
57GO:0006166: purine ribonucleoside salvage2.22E-03
58GO:0010239: chloroplast mRNA processing2.22E-03
59GO:0006241: CTP biosynthetic process2.22E-03
60GO:0006424: glutamyl-tRNA aminoacylation2.22E-03
61GO:0006165: nucleoside diphosphate phosphorylation2.22E-03
62GO:0006228: UTP biosynthetic process2.22E-03
63GO:0006168: adenine salvage2.22E-03
64GO:0050482: arachidonic acid secretion2.22E-03
65GO:0016556: mRNA modification2.22E-03
66GO:2001141: regulation of RNA biosynthetic process2.22E-03
67GO:0019344: cysteine biosynthetic process2.47E-03
68GO:0006418: tRNA aminoacylation for protein translation2.73E-03
69GO:0007017: microtubule-based process2.73E-03
70GO:0006808: regulation of nitrogen utilization2.99E-03
71GO:0015976: carbon utilization2.99E-03
72GO:0009765: photosynthesis, light harvesting2.99E-03
73GO:0006183: GTP biosynthetic process2.99E-03
74GO:2000038: regulation of stomatal complex development2.99E-03
75GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.99E-03
76GO:0008295: spermidine biosynthetic process2.99E-03
77GO:0044206: UMP salvage2.99E-03
78GO:0006749: glutathione metabolic process2.99E-03
79GO:0016998: cell wall macromolecule catabolic process3.00E-03
80GO:0009735: response to cytokinin3.30E-03
81GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.58E-03
82GO:0044209: AMP salvage3.83E-03
83GO:0006665: sphingolipid metabolic process3.83E-03
84GO:0000304: response to singlet oxygen3.83E-03
85GO:0010375: stomatal complex patterning3.83E-03
86GO:0048359: mucilage metabolic process involved in seed coat development3.83E-03
87GO:0016120: carotene biosynthetic process3.83E-03
88GO:0045038: protein import into chloroplast thylakoid membrane3.83E-03
89GO:0043097: pyrimidine nucleoside salvage3.83E-03
90GO:0045487: gibberellin catabolic process3.83E-03
91GO:0009306: protein secretion3.89E-03
92GO:0016117: carotenoid biosynthetic process4.22E-03
93GO:0042335: cuticle development4.56E-03
94GO:0000413: protein peptidyl-prolyl isomerization4.56E-03
95GO:0010405: arabinogalactan protein metabolic process4.74E-03
96GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.74E-03
97GO:0016554: cytidine to uridine editing4.74E-03
98GO:0042793: transcription from plastid promoter4.74E-03
99GO:0010190: cytochrome b6f complex assembly4.74E-03
100GO:0009117: nucleotide metabolic process4.74E-03
101GO:0006206: pyrimidine nucleobase metabolic process4.74E-03
102GO:0018258: protein O-linked glycosylation via hydroxyproline4.74E-03
103GO:0035435: phosphate ion transmembrane transport4.74E-03
104GO:0006014: D-ribose metabolic process4.74E-03
105GO:0010555: response to mannitol5.72E-03
106GO:0009955: adaxial/abaxial pattern specification5.72E-03
107GO:0048280: vesicle fusion with Golgi apparatus5.72E-03
108GO:0009554: megasporogenesis5.72E-03
109GO:0009395: phospholipid catabolic process6.76E-03
110GO:0009772: photosynthetic electron transport in photosystem II6.76E-03
111GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.76E-03
112GO:0009828: plant-type cell wall loosening7.38E-03
113GO:0007267: cell-cell signaling7.84E-03
114GO:0006644: phospholipid metabolic process7.86E-03
115GO:0009642: response to light intensity7.86E-03
116GO:0009690: cytokinin metabolic process7.86E-03
117GO:0006605: protein targeting7.86E-03
118GO:0042255: ribosome assembly7.86E-03
119GO:0009704: de-etiolation7.86E-03
120GO:0006875: cellular metal ion homeostasis7.86E-03
121GO:0016126: sterol biosynthetic process8.82E-03
122GO:0017004: cytochrome complex assembly9.03E-03
123GO:0009932: cell tip growth9.03E-03
124GO:0071482: cellular response to light stimulus9.03E-03
125GO:0006526: arginine biosynthetic process9.03E-03
126GO:0009627: systemic acquired resistance9.86E-03
127GO:0015780: nucleotide-sugar transport1.03E-02
128GO:0006783: heme biosynthetic process1.03E-02
129GO:0006754: ATP biosynthetic process1.03E-02
130GO:0015979: photosynthesis1.13E-02
131GO:0042761: very long-chain fatty acid biosynthetic process1.15E-02
132GO:0009817: defense response to fungus, incompatible interaction1.15E-02
133GO:1900865: chloroplast RNA modification1.15E-02
134GO:0018298: protein-chromophore linkage1.15E-02
135GO:0009790: embryo development1.23E-02
136GO:0009407: toxin catabolic process1.27E-02
137GO:0006896: Golgi to vacuole transport1.29E-02
138GO:0006782: protoporphyrinogen IX biosynthetic process1.29E-02
139GO:0006535: cysteine biosynthetic process from serine1.29E-02
140GO:0043069: negative regulation of programmed cell death1.29E-02
141GO:0006869: lipid transport1.40E-02
142GO:0030148: sphingolipid biosynthetic process1.43E-02
143GO:0009089: lysine biosynthetic process via diaminopimelate1.43E-02
144GO:0009073: aromatic amino acid family biosynthetic process1.43E-02
145GO:0006352: DNA-templated transcription, initiation1.43E-02
146GO:0006415: translational termination1.43E-02
147GO:0018119: peptidyl-cysteine S-nitrosylation1.43E-02
148GO:0016051: carbohydrate biosynthetic process1.47E-02
149GO:0045037: protein import into chloroplast stroma1.57E-02
150GO:0050826: response to freezing1.72E-02
151GO:0006631: fatty acid metabolic process1.75E-02
152GO:0009266: response to temperature stimulus1.87E-02
153GO:0010207: photosystem II assembly1.87E-02
154GO:0006541: glutamine metabolic process1.87E-02
155GO:0010020: chloroplast fission1.87E-02
156GO:0008643: carbohydrate transport2.05E-02
157GO:0009636: response to toxic substance2.13E-02
158GO:0006833: water transport2.20E-02
159GO:0010025: wax biosynthetic process2.20E-02
160GO:0009116: nucleoside metabolic process2.36E-02
161GO:0000027: ribosomal large subunit assembly2.36E-02
162GO:0009664: plant-type cell wall organization2.38E-02
163GO:0042538: hyperosmotic salinity response2.38E-02
164GO:0055114: oxidation-reduction process2.40E-02
165GO:0031408: oxylipin biosynthetic process2.71E-02
166GO:0016226: iron-sulfur cluster assembly2.89E-02
167GO:0007005: mitochondrion organization2.89E-02
168GO:0009411: response to UV3.08E-02
169GO:0010091: trichome branching3.27E-02
170GO:0042127: regulation of cell proliferation3.27E-02
171GO:0019722: calcium-mediated signaling3.27E-02
172GO:0042147: retrograde transport, endosome to Golgi3.46E-02
173GO:0000226: microtubule cytoskeleton organization3.66E-02
174GO:0000271: polysaccharide biosynthetic process3.66E-02
175GO:0080022: primary root development3.66E-02
176GO:0008033: tRNA processing3.66E-02
177GO:0034220: ion transmembrane transport3.66E-02
178GO:0009742: brassinosteroid mediated signaling pathway3.85E-02
179GO:0006520: cellular amino acid metabolic process3.86E-02
180GO:0045489: pectin biosynthetic process3.86E-02
181GO:0009646: response to absence of light4.06E-02
182GO:0006623: protein targeting to vacuole4.27E-02
183GO:0019252: starch biosynthetic process4.27E-02
184GO:0008654: phospholipid biosynthetic process4.27E-02
185GO:0045454: cell redox homeostasis4.30E-02
186GO:0006891: intra-Golgi vesicle-mediated transport4.48E-02
187GO:0007264: small GTPase mediated signal transduction4.69E-02
188GO:0010583: response to cyclopentenone4.69E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0004496: mevalonate kinase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0045435: lycopene epsilon cyclase activity0.00E+00
14GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
15GO:0004823: leucine-tRNA ligase activity0.00E+00
16GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
17GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
18GO:0019843: rRNA binding1.43E-13
19GO:0003735: structural constituent of ribosome3.86E-07
20GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.48E-06
21GO:0016851: magnesium chelatase activity6.33E-05
22GO:0016762: xyloglucan:xyloglucosyl transferase activity8.08E-05
23GO:0016798: hydrolase activity, acting on glycosyl bonds2.11E-04
24GO:0051920: peroxiredoxin activity3.27E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.37E-04
26GO:0030794: (S)-coclaurine-N-methyltransferase activity4.37E-04
27GO:0004560: alpha-L-fucosidase activity4.37E-04
28GO:0008184: glycogen phosphorylase activity4.37E-04
29GO:0001530: lipopolysaccharide binding4.37E-04
30GO:0004828: serine-tRNA ligase activity4.37E-04
31GO:0080132: fatty acid alpha-hydroxylase activity4.37E-04
32GO:0004645: phosphorylase activity4.37E-04
33GO:0047560: 3-dehydrosphinganine reductase activity4.37E-04
34GO:0009374: biotin binding4.37E-04
35GO:0004071: aspartate-ammonia ligase activity4.37E-04
36GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.37E-04
37GO:0004853: uroporphyrinogen decarboxylase activity4.37E-04
38GO:0015088: copper uptake transmembrane transporter activity4.37E-04
39GO:0004832: valine-tRNA ligase activity4.37E-04
40GO:0004328: formamidase activity4.37E-04
41GO:0016209: antioxidant activity5.27E-04
42GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.00E-04
43GO:0052689: carboxylic ester hydrolase activity7.13E-04
44GO:0004766: spermidine synthase activity9.44E-04
45GO:0008479: queuine tRNA-ribosyltransferase activity9.44E-04
46GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.44E-04
47GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity9.44E-04
48GO:0070402: NADPH binding1.54E-03
49GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.54E-03
50GO:0005504: fatty acid binding1.54E-03
51GO:0017150: tRNA dihydrouridine synthase activity1.54E-03
52GO:0003913: DNA photolyase activity1.54E-03
53GO:0002161: aminoacyl-tRNA editing activity1.54E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.54E-03
55GO:0030267: glyoxylate reductase (NADP) activity1.54E-03
56GO:0016788: hydrolase activity, acting on ester bonds1.66E-03
57GO:0008097: 5S rRNA binding2.22E-03
58GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.22E-03
59GO:0035529: NADH pyrophosphatase activity2.22E-03
60GO:0003999: adenine phosphoribosyltransferase activity2.22E-03
61GO:0016149: translation release factor activity, codon specific2.22E-03
62GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.22E-03
63GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.22E-03
64GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.22E-03
65GO:0004550: nucleoside diphosphate kinase activity2.22E-03
66GO:0043023: ribosomal large subunit binding2.22E-03
67GO:0004659: prenyltransferase activity2.99E-03
68GO:0016279: protein-lysine N-methyltransferase activity2.99E-03
69GO:0001053: plastid sigma factor activity2.99E-03
70GO:0004845: uracil phosphoribosyltransferase activity2.99E-03
71GO:0016836: hydro-lyase activity2.99E-03
72GO:0016987: sigma factor activity2.99E-03
73GO:0045430: chalcone isomerase activity2.99E-03
74GO:0052793: pectin acetylesterase activity2.99E-03
75GO:0043495: protein anchor2.99E-03
76GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.99E-03
77GO:0003989: acetyl-CoA carboxylase activity3.83E-03
78GO:0009922: fatty acid elongase activity3.83E-03
79GO:0004623: phospholipase A2 activity3.83E-03
80GO:0004040: amidase activity3.83E-03
81GO:0008514: organic anion transmembrane transporter activity3.89E-03
82GO:0004812: aminoacyl-tRNA ligase activity4.22E-03
83GO:0008200: ion channel inhibitor activity4.74E-03
84GO:0004605: phosphatidate cytidylyltransferase activity4.74E-03
85GO:0080030: methyl indole-3-acetate esterase activity4.74E-03
86GO:1990714: hydroxyproline O-galactosyltransferase activity4.74E-03
87GO:0016208: AMP binding4.74E-03
88GO:0016462: pyrophosphatase activity4.74E-03
89GO:0019901: protein kinase binding5.68E-03
90GO:0004124: cysteine synthase activity5.72E-03
91GO:0051753: mannan synthase activity5.72E-03
92GO:0004849: uridine kinase activity5.72E-03
93GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.72E-03
94GO:0004747: ribokinase activity5.72E-03
95GO:0009881: photoreceptor activity6.76E-03
96GO:0019899: enzyme binding6.76E-03
97GO:0043295: glutathione binding6.76E-03
98GO:0005200: structural constituent of cytoskeleton7.84E-03
99GO:0008312: 7S RNA binding7.86E-03
100GO:0008865: fructokinase activity7.86E-03
101GO:0008289: lipid binding8.35E-03
102GO:0016758: transferase activity, transferring hexosyl groups9.74E-03
103GO:0016491: oxidoreductase activity9.94E-03
104GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.03E-02
105GO:0003747: translation release factor activity1.03E-02
106GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.03E-02
107GO:0005381: iron ion transmembrane transporter activity1.15E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.15E-02
109GO:0003993: acid phosphatase activity1.53E-02
110GO:0004089: carbonate dehydratase activity1.72E-02
111GO:0015114: phosphate ion transmembrane transporter activity1.72E-02
112GO:0004364: glutathione transferase activity1.82E-02
113GO:0051536: iron-sulfur cluster binding2.36E-02
114GO:0005528: FK506 binding2.36E-02
115GO:0008324: cation transmembrane transporter activity2.54E-02
116GO:0004176: ATP-dependent peptidase activity2.71E-02
117GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.89E-02
118GO:0022891: substrate-specific transmembrane transporter activity3.08E-02
119GO:0003727: single-stranded RNA binding3.27E-02
120GO:0004650: polygalacturonase activity3.32E-02
121GO:0003713: transcription coactivator activity3.86E-02
122GO:0008080: N-acetyltransferase activity3.86E-02
123GO:0050662: coenzyme binding4.06E-02
124GO:0010181: FMN binding4.06E-02
125GO:0042803: protein homodimerization activity4.55E-02
126GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.66E-02
127GO:0000156: phosphorelay response regulator activity4.91E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast3.09E-37
4GO:0009570: chloroplast stroma2.48E-34
5GO:0009941: chloroplast envelope3.20E-23
6GO:0009579: thylakoid7.82E-08
7GO:0005840: ribosome2.92E-07
8GO:0009536: plastid7.39E-07
9GO:0048046: apoplast3.64E-06
10GO:0009535: chloroplast thylakoid membrane4.33E-06
11GO:0046658: anchored component of plasma membrane4.97E-06
12GO:0005618: cell wall6.22E-06
13GO:0009543: chloroplast thylakoid lumen6.61E-06
14GO:0010007: magnesium chelatase complex2.92E-05
15GO:0009534: chloroplast thylakoid2.99E-05
16GO:0031977: thylakoid lumen5.94E-05
17GO:0031225: anchored component of membrane7.71E-05
18GO:0009505: plant-type cell wall1.09E-04
19GO:0009923: fatty acid elongase complex4.37E-04
20GO:0031969: chloroplast membrane5.82E-04
21GO:0045298: tubulin complex7.70E-04
22GO:0080085: signal recognition particle, chloroplast targeting9.44E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex9.44E-04
24GO:0000311: plastid large ribosomal subunit1.39E-03
25GO:0009509: chromoplast1.54E-03
26GO:0009317: acetyl-CoA carboxylase complex1.54E-03
27GO:0009508: plastid chromosome1.58E-03
28GO:0042651: thylakoid membrane2.73E-03
29GO:0016020: membrane2.82E-03
30GO:0031897: Tic complex2.99E-03
31GO:0005576: extracellular region4.06E-03
32GO:0009533: chloroplast stromal thylakoid6.76E-03
33GO:0009295: nucleoid7.84E-03
34GO:0012507: ER to Golgi transport vesicle membrane7.86E-03
35GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.03E-03
36GO:0005886: plasma membrane9.41E-03
37GO:0005763: mitochondrial small ribosomal subunit1.03E-02
38GO:0022626: cytosolic ribosome1.18E-02
39GO:0015934: large ribosomal subunit1.34E-02
40GO:0032040: small-subunit processome1.57E-02
41GO:0030176: integral component of endoplasmic reticulum membrane2.03E-02
42GO:0043234: protein complex2.20E-02
43GO:0005875: microtubule associated complex2.20E-02
44GO:0015935: small ribosomal subunit2.71E-02
45GO:0031410: cytoplasmic vesicle2.89E-02
46GO:0009706: chloroplast inner membrane3.64E-02
47GO:0022625: cytosolic large ribosomal subunit3.67E-02
48GO:0009523: photosystem II4.27E-02
49GO:0009504: cell plate4.27E-02
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Gene type



Gene DE type