co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G31750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0046677: response to antibiotic	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	4.31E-09
9	GO:0015979: photosynthesis	6.77E-09
10	GO:0032544: plastid translation	7.56E-08
11	GO:0034755: iron ion transmembrane transport	2.86E-06
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.86E-06
13	GO:0006000: fructose metabolic process	1.03E-05
14	GO:0009644: response to high light intensity	1.23E-05
15	GO:0006546: glycine catabolic process	4.26E-05
16	GO:0045727: positive regulation of translation	4.26E-05
17	GO:0010207: photosystem II assembly	4.33E-05
18	GO:0015995: chlorophyll biosynthetic process	4.69E-05
19	GO:0018298: protein-chromophore linkage	5.71E-05
20	GO:0009768: photosynthesis, light harvesting in photosystem I	8.50E-05
21	GO:0042549: photosystem II stabilization	9.94E-05
22	GO:0009409: response to cold	1.31E-04
23	GO:0009735: response to cytokinin	1.33E-04
24	GO:0010019: chloroplast-nucleus signaling pathway	1.37E-04
25	GO:0006824: cobalt ion transport	2.48E-04
26	GO:0043489: RNA stabilization	2.48E-04
27	GO:0000481: maturation of 5S rRNA	2.48E-04
28	GO:0042371: vitamin K biosynthetic process	2.48E-04
29	GO:0034337: RNA folding	2.48E-04
30	GO:0010450: inflorescence meristem growth	2.48E-04
31	GO:0071588: hydrogen peroxide mediated signaling pathway	2.48E-04
32	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.48E-04
33	GO:0009657: plastid organization	2.82E-04
34	GO:0006002: fructose 6-phosphate metabolic process	2.82E-04
35	GO:0010206: photosystem II repair	3.41E-04
36	GO:0018119: peptidyl-cysteine S-nitrosylation	5.47E-04
37	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.49E-04
38	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.49E-04
39	GO:0006094: gluconeogenesis	7.09E-04
40	GO:0005986: sucrose biosynthetic process	7.09E-04
41	GO:0019253: reductive pentose-phosphate cycle	7.98E-04
42	GO:0006013: mannose metabolic process	8.92E-04
43	GO:0006518: peptide metabolic process	8.92E-04
44	GO:0006696: ergosterol biosynthetic process	8.92E-04
45	GO:0045165: cell fate commitment	8.92E-04
46	GO:0007623: circadian rhythm	9.61E-04
47	GO:0006636: unsaturated fatty acid biosynthetic process	9.89E-04
48	GO:0009800: cinnamic acid biosynthetic process	1.27E-03
49	GO:0051513: regulation of monopolar cell growth	1.27E-03
50	GO:0071484: cellular response to light intensity	1.27E-03
51	GO:0006364: rRNA processing	1.66E-03
52	GO:2000122: negative regulation of stomatal complex development	1.70E-03
53	GO:2000038: regulation of stomatal complex development	1.70E-03
54	GO:0010037: response to carbon dioxide	1.70E-03
55	GO:0006542: glutamine biosynthetic process	1.70E-03
56	GO:0019676: ammonia assimilation cycle	1.70E-03
57	GO:0015976: carbon utilization	1.70E-03
58	GO:0010023: proanthocyanidin biosynthetic process	1.70E-03
59	GO:0019464: glycine decarboxylation via glycine cleavage system	1.70E-03
60	GO:0015994: chlorophyll metabolic process	1.70E-03
61	GO:0042631: cellular response to water deprivation	1.99E-03
62	GO:0010117: photoprotection	2.17E-03
63	GO:0045038: protein import into chloroplast thylakoid membrane	2.17E-03
64	GO:0006461: protein complex assembly	2.17E-03
65	GO:1902183: regulation of shoot apical meristem development	2.17E-03
66	GO:0010158: abaxial cell fate specification	2.17E-03
67	GO:0032876: negative regulation of DNA endoreduplication	2.17E-03
68	GO:0030308: negative regulation of cell growth	2.17E-03
69	GO:0009247: glycolipid biosynthetic process	2.17E-03
70	GO:0006559: L-phenylalanine catabolic process	2.67E-03
71	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.67E-03
72	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.67E-03
73	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.21E-03
74	GO:2000037: regulation of stomatal complex patterning	3.21E-03
75	GO:0010196: nonphotochemical quenching	3.79E-03
76	GO:0050829: defense response to Gram-negative bacterium	3.79E-03
77	GO:1900057: positive regulation of leaf senescence	3.79E-03
78	GO:0009645: response to low light intensity stimulus	3.79E-03
79	GO:0009610: response to symbiotic fungus	3.79E-03
80	GO:0009772: photosynthetic electron transport in photosystem II	3.79E-03
81	GO:0010027: thylakoid membrane organization	3.81E-03
82	GO:0042128: nitrate assimilation	4.26E-03
83	GO:0006402: mRNA catabolic process	4.39E-03
84	GO:0030091: protein repair	4.39E-03
85	GO:0019375: galactolipid biosynthetic process	4.39E-03
86	GO:0032508: DNA duplex unwinding	4.39E-03
87	GO:0010492: maintenance of shoot apical meristem identity	4.39E-03
88	GO:0006412: translation	4.90E-03
89	GO:0010093: specification of floral organ identity	5.03E-03
90	GO:0009699: phenylpropanoid biosynthetic process	5.03E-03
91	GO:0008152: metabolic process	5.41E-03
92	GO:0009821: alkaloid biosynthetic process	5.70E-03
93	GO:0048507: meristem development	5.70E-03
94	GO:2000024: regulation of leaf development	5.70E-03
95	GO:0000373: Group II intron splicing	5.70E-03
96	GO:0009051: pentose-phosphate shunt, oxidative branch	5.70E-03
97	GO:0009631: cold acclimation	5.75E-03
98	GO:0006810: transport	6.38E-03
99	GO:0010205: photoinhibition	6.40E-03
100	GO:0006949: syncytium formation	7.12E-03
101	GO:0046686: response to cadmium ion	7.16E-03
102	GO:0055114: oxidation-reduction process	7.41E-03
103	GO:0019684: photosynthesis, light reaction	7.88E-03
104	GO:0009089: lysine biosynthetic process via diaminopimelate	7.88E-03
105	GO:0043085: positive regulation of catalytic activity	7.88E-03
106	GO:0006879: cellular iron ion homeostasis	7.88E-03
107	GO:0000272: polysaccharide catabolic process	7.88E-03
108	GO:0009750: response to fructose	7.88E-03
109	GO:0009698: phenylpropanoid metabolic process	7.88E-03
110	GO:0010114: response to red light	8.13E-03
111	GO:0005983: starch catabolic process	8.66E-03
112	GO:0008361: regulation of cell size	8.66E-03
113	GO:0009658: chloroplast organization	9.09E-03
114	GO:0010628: positive regulation of gene expression	9.47E-03
115	GO:0006006: glucose metabolic process	9.47E-03
116	GO:2000028: regulation of photoperiodism, flowering	9.47E-03
117	GO:0018107: peptidyl-threonine phosphorylation	9.47E-03
118	GO:0009718: anthocyanin-containing compound biosynthetic process	9.47E-03
119	GO:0009767: photosynthetic electron transport chain	9.47E-03
120	GO:0009933: meristem structural organization	1.03E-02
121	GO:0006417: regulation of translation	1.22E-02
122	GO:0009944: polarity specification of adaxial/abaxial axis	1.30E-02
123	GO:0006096: glycolytic process	1.30E-02
124	GO:0006418: tRNA aminoacylation for protein translation	1.39E-02
125	GO:0061077: chaperone-mediated protein folding	1.49E-02
126	GO:0042545: cell wall modification	1.52E-02
127	GO:0006396: RNA processing	1.61E-02
128	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.69E-02
129	GO:0006284: base-excision repair	1.79E-02
130	GO:0009561: megagametogenesis	1.79E-02
131	GO:0016117: carotenoid biosynthetic process	1.90E-02
132	GO:0000413: protein peptidyl-prolyl isomerization	2.01E-02
133	GO:0006397: mRNA processing	2.07E-02
134	GO:0010154: fruit development	2.12E-02
135	GO:0019252: starch biosynthetic process	2.34E-02
136	GO:0002229: defense response to oomycetes	2.46E-02
137	GO:0000302: response to reactive oxygen species	2.46E-02
138	GO:0006633: fatty acid biosynthetic process	2.47E-02
139	GO:0010090: trichome morphogenesis	2.70E-02
140	GO:0030163: protein catabolic process	2.70E-02
141	GO:0045490: pectin catabolic process	2.71E-02
142	GO:0009451: RNA modification	2.78E-02
143	GO:0009828: plant-type cell wall loosening	2.82E-02
144	GO:0042742: defense response to bacterium	3.19E-02
145	GO:0006979: response to oxidative stress	3.22E-02
146	GO:0016311: dephosphorylation	3.72E-02
147	GO:0048481: plant ovule development	3.86E-02
148	GO:0000160: phosphorelay signal transduction system	4.00E-02
149	GO:0009611: response to wounding	4.11E-02
150	GO:0010218: response to far red light	4.14E-02
151	GO:0042254: ribosome biogenesis	4.26E-02
152	GO:0010119: regulation of stomatal movement	4.28E-02
153	GO:0007568: aging	4.28E-02
154	GO:0045087: innate immune response	4.56E-02
155	GO:0016051: carbohydrate biosynthetic process	4.56E-02
156	GO:0009637: response to blue light	4.56E-02
157	GO:0034599: cellular response to oxidative stress	4.71E-02
158	GO:0009723: response to ethylene	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
5	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
6	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
11	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
12	GO:0019843: rRNA binding	2.65E-11
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.83E-08
14	GO:0005528: FK506 binding	3.79E-08
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.86E-06
16	GO:0016168: chlorophyll binding	3.79E-05
17	GO:0008266: poly(U) RNA binding	4.33E-05
18	GO:0031409: pigment binding	6.20E-05
19	GO:0051996: squalene synthase activity	2.48E-04
20	GO:0045485: omega-6 fatty acid desaturase activity	2.48E-04
21	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	2.48E-04
22	GO:0046906: tetrapyrrole binding	2.48E-04
23	GO:0005381: iron ion transmembrane transporter activity	4.05E-04
24	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.49E-04
25	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.49E-04
26	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.49E-04
27	GO:0047746: chlorophyllase activity	5.49E-04
28	GO:0042389: omega-3 fatty acid desaturase activity	5.49E-04
29	GO:0004618: phosphoglycerate kinase activity	5.49E-04
30	GO:0010297: heteropolysaccharide binding	5.49E-04
31	GO:0004047: aminomethyltransferase activity	5.49E-04
32	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.49E-04
33	GO:0031072: heat shock protein binding	7.09E-04
34	GO:0045548: phenylalanine ammonia-lyase activity	8.92E-04
35	GO:0002161: aminoacyl-tRNA editing activity	8.92E-04
36	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.92E-04
37	GO:0051537: 2 iron, 2 sulfur cluster binding	1.26E-03
38	GO:0035250: UDP-galactosyltransferase activity	1.27E-03
39	GO:0016851: magnesium chelatase activity	1.27E-03
40	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.27E-03
41	GO:0003735: structural constituent of ribosome	1.28E-03
42	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.70E-03
43	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.70E-03
44	GO:0051538: 3 iron, 4 sulfur cluster binding	2.17E-03
45	GO:0004356: glutamate-ammonia ligase activity	2.17E-03
46	GO:0008725: DNA-3-methyladenine glycosylase activity	2.17E-03
47	GO:0050662: coenzyme binding	2.31E-03
48	GO:0004130: cytochrome-c peroxidase activity	2.67E-03
49	GO:0042578: phosphoric ester hydrolase activity	2.67E-03
50	GO:0016688: L-ascorbate peroxidase activity	2.67E-03
51	GO:0004559: alpha-mannosidase activity	3.21E-03
52	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.21E-03
53	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.21E-03
54	GO:0019899: enzyme binding	3.79E-03
55	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.03E-03
56	GO:0009055: electron carrier activity	5.19E-03
57	GO:0004222: metalloendopeptidase activity	5.48E-03
58	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.75E-03
59	GO:0016844: strictosidine synthase activity	6.40E-03
60	GO:0046872: metal ion binding	6.92E-03
61	GO:0000049: tRNA binding	8.66E-03
62	GO:0004022: alcohol dehydrogenase (NAD) activity	9.47E-03
63	GO:0004089: carbonate dehydratase activity	9.47E-03
64	GO:0045330: aspartyl esterase activity	1.22E-02
65	GO:0030599: pectinesterase activity	1.47E-02
66	GO:0004176: ATP-dependent peptidase activity	1.49E-02
67	GO:0051082: unfolded protein binding	1.57E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	1.69E-02
69	GO:0003756: protein disulfide isomerase activity	1.79E-02
70	GO:0003727: single-stranded RNA binding	1.79E-02
71	GO:0004812: aminoacyl-tRNA ligase activity	1.90E-02
72	GO:0000156: phosphorelay response regulator activity	2.70E-02
73	GO:0008483: transaminase activity	2.94E-02
74	GO:0003723: RNA binding	3.05E-02
75	GO:0016597: amino acid binding	3.07E-02
76	GO:0042802: identical protein binding	3.44E-02
77	GO:0003824: catalytic activity	3.65E-02
78	GO:0005215: transporter activity	3.69E-02
79	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.72E-02
80	GO:0008236: serine-type peptidase activity	3.72E-02
81	GO:0015238: drug transmembrane transporter activity	4.00E-02
82	GO:0016788: hydrolase activity, acting on ester bonds	4.26E-02
83	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.71E-02
84	GO:0050660: flavin adenine dinucleotide binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	1.13E-50
3	GO:0009535: chloroplast thylakoid membrane	1.27E-35
4	GO:0009941: chloroplast envelope	6.36E-30
5	GO:0009534: chloroplast thylakoid	1.27E-28
6	GO:0009570: chloroplast stroma	2.85E-26
7	GO:0009579: thylakoid	8.42E-15
8	GO:0009543: chloroplast thylakoid lumen	2.45E-14
9	GO:0009706: chloroplast inner membrane	1.73E-07
10	GO:0010287: plastoglobule	3.20E-07
11	GO:0030095: chloroplast photosystem II	1.01E-06
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.99E-06
13	GO:0009523: photosystem II	1.38E-05
14	GO:0000312: plastid small ribosomal subunit	4.33E-05
15	GO:0031977: thylakoid lumen	1.22E-04
16	GO:0009533: chloroplast stromal thylakoid	1.80E-04
17	GO:0009522: photosystem I	2.24E-04
18	GO:0009783: photosystem II antenna complex	2.48E-04
19	GO:0009344: nitrite reductase complex [NAD(P)H]	2.48E-04
20	GO:0009547: plastid ribosome	2.48E-04
21	GO:0009782: photosystem I antenna complex	2.48E-04
22	GO:0010319: stromule	3.80E-04
23	GO:0030529: intracellular ribonucleoprotein complex	4.41E-04
24	GO:0031969: chloroplast membrane	5.39E-04
25	GO:0042170: plastid membrane	5.49E-04
26	GO:0080085: signal recognition particle, chloroplast targeting	5.49E-04
27	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.49E-04
28	GO:0010007: magnesium chelatase complex	8.92E-04
29	GO:0030076: light-harvesting complex	8.92E-04
30	GO:0005840: ribosome	9.62E-04
31	GO:0016020: membrane	1.02E-03
32	GO:0009654: photosystem II oxygen evolving complex	1.20E-03
33	GO:0005960: glycine cleavage complex	1.27E-03
34	GO:0019898: extrinsic component of membrane	2.47E-03
35	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.03E-03
36	GO:0048046: apoplast	5.36E-03
37	GO:0008180: COP9 signalosome	5.70E-03
38	GO:0005763: mitochondrial small ribosomal subunit	5.70E-03
39	GO:0015934: large ribosomal subunit	5.75E-03
40	GO:0000311: plastid large ribosomal subunit	8.66E-03
41	GO:0032040: small-subunit processome	8.66E-03
42	GO:0042651: thylakoid membrane	1.39E-02
43	GO:0009536: plastid	1.43E-02
44	GO:0009505: plant-type cell wall	1.48E-02
45	GO:0071944: cell periphery	2.70E-02
46	GO:0022627: cytosolic small ribosomal subunit	3.59E-02
47	GO:0022626: cytosolic ribosome	3.79E-02
48	GO:0019005: SCF ubiquitin ligase complex	3.86E-02
49	GO:0005618: cell wall	4.19E-02