GO Enrichment Analysis of Co-expressed Genes with
AT2G31170
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 9.09E-08 |
| 6 | GO:1901259: chloroplast rRNA processing | 2.38E-07 |
| 7 | GO:0032544: plastid translation | 8.93E-07 |
| 8 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.34E-06 |
| 9 | GO:0051085: chaperone mediated protein folding requiring cofactor | 5.26E-06 |
| 10 | GO:0006418: tRNA aminoacylation for protein translation | 1.31E-05 |
| 11 | GO:0042793: transcription from plastid promoter | 2.49E-05 |
| 12 | GO:0009658: chloroplast organization | 3.03E-05 |
| 13 | GO:0006353: DNA-templated transcription, termination | 6.23E-05 |
| 14 | GO:0006783: heme biosynthetic process | 9.74E-05 |
| 15 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.06E-04 |
| 16 | GO:0010028: xanthophyll cycle | 1.06E-04 |
| 17 | GO:0006438: valyl-tRNA aminoacylation | 1.06E-04 |
| 18 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.18E-04 |
| 19 | GO:0018026: peptidyl-lysine monomethylation | 2.48E-04 |
| 20 | GO:0006568: tryptophan metabolic process | 2.48E-04 |
| 21 | GO:0006954: inflammatory response | 4.12E-04 |
| 22 | GO:0006760: folic acid-containing compound metabolic process | 4.12E-04 |
| 23 | GO:0006457: protein folding | 5.64E-04 |
| 24 | GO:0006986: response to unfolded protein | 5.92E-04 |
| 25 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.92E-04 |
| 26 | GO:0010239: chloroplast mRNA processing | 5.92E-04 |
| 27 | GO:0006241: CTP biosynthetic process | 5.92E-04 |
| 28 | GO:0006165: nucleoside diphosphate phosphorylation | 5.92E-04 |
| 29 | GO:0006228: UTP biosynthetic process | 5.92E-04 |
| 30 | GO:0008033: tRNA processing | 6.38E-04 |
| 31 | GO:0046656: folic acid biosynthetic process | 7.86E-04 |
| 32 | GO:0071483: cellular response to blue light | 7.86E-04 |
| 33 | GO:0006183: GTP biosynthetic process | 7.86E-04 |
| 34 | GO:0009790: embryo development | 9.44E-04 |
| 35 | GO:0010027: thylakoid membrane organization | 1.19E-03 |
| 36 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.21E-03 |
| 37 | GO:0017148: negative regulation of translation | 1.45E-03 |
| 38 | GO:0046654: tetrahydrofolate biosynthetic process | 1.45E-03 |
| 39 | GO:0009793: embryo development ending in seed dormancy | 1.45E-03 |
| 40 | GO:0009955: adaxial/abaxial pattern specification | 1.45E-03 |
| 41 | GO:0042026: protein refolding | 1.45E-03 |
| 42 | GO:0052543: callose deposition in cell wall | 1.97E-03 |
| 43 | GO:0042255: ribosome assembly | 1.97E-03 |
| 44 | GO:0071482: cellular response to light stimulus | 2.24E-03 |
| 45 | GO:0009657: plastid organization | 2.24E-03 |
| 46 | GO:0098656: anion transmembrane transport | 2.53E-03 |
| 47 | GO:1900865: chloroplast RNA modification | 2.84E-03 |
| 48 | GO:0031425: chloroplast RNA processing | 2.84E-03 |
| 49 | GO:0015979: photosynthesis | 3.11E-03 |
| 50 | GO:0045036: protein targeting to chloroplast | 3.15E-03 |
| 51 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.47E-03 |
| 52 | GO:0043085: positive regulation of catalytic activity | 3.47E-03 |
| 53 | GO:0006352: DNA-templated transcription, initiation | 3.47E-03 |
| 54 | GO:0045037: protein import into chloroplast stroma | 3.81E-03 |
| 55 | GO:0009691: cytokinin biosynthetic process | 4.16E-03 |
| 56 | GO:0090351: seedling development | 4.88E-03 |
| 57 | GO:0016114: terpenoid biosynthetic process | 6.46E-03 |
| 58 | GO:0007005: mitochondrion organization | 6.87E-03 |
| 59 | GO:0009411: response to UV | 7.30E-03 |
| 60 | GO:0006413: translational initiation | 7.64E-03 |
| 61 | GO:0009306: protein secretion | 7.74E-03 |
| 62 | GO:0009451: RNA modification | 8.39E-03 |
| 63 | GO:0009416: response to light stimulus | 8.91E-03 |
| 64 | GO:0006662: glycerol ether metabolic process | 9.10E-03 |
| 65 | GO:0009741: response to brassinosteroid | 9.10E-03 |
| 66 | GO:0032502: developmental process | 1.11E-02 |
| 67 | GO:0009627: systemic acquired resistance | 1.48E-02 |
| 68 | GO:0048481: plant ovule development | 1.65E-02 |
| 69 | GO:0008219: cell death | 1.65E-02 |
| 70 | GO:0034599: cellular response to oxidative stress | 2.02E-02 |
| 71 | GO:0006412: translation | 2.16E-02 |
| 72 | GO:0042742: defense response to bacterium | 2.18E-02 |
| 73 | GO:0042542: response to hydrogen peroxide | 2.27E-02 |
| 74 | GO:0051707: response to other organism | 2.34E-02 |
| 75 | GO:0006364: rRNA processing | 2.89E-02 |
| 76 | GO:0009585: red, far-red light phototransduction | 2.89E-02 |
| 77 | GO:0015031: protein transport | 2.94E-02 |
| 78 | GO:0009735: response to cytokinin | 3.78E-02 |
| 79 | GO:0045893: positive regulation of transcription, DNA-templated | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
| 4 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 5 | GO:0016851: magnesium chelatase activity | 5.26E-06 |
| 6 | GO:0051087: chaperone binding | 1.31E-05 |
| 7 | GO:0004812: aminoacyl-tRNA ligase activity | 2.73E-05 |
| 8 | GO:0051082: unfolded protein binding | 5.36E-05 |
| 9 | GO:0004832: valine-tRNA ligase activity | 1.06E-04 |
| 10 | GO:0004830: tryptophan-tRNA ligase activity | 1.06E-04 |
| 11 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.06E-04 |
| 12 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.06E-04 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.06E-04 |
| 14 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.06E-04 |
| 15 | GO:0052381: tRNA dimethylallyltransferase activity | 1.06E-04 |
| 16 | GO:0004150: dihydroneopterin aldolase activity | 2.48E-04 |
| 17 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.48E-04 |
| 18 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.48E-04 |
| 19 | GO:0000774: adenyl-nucleotide exchange factor activity | 2.48E-04 |
| 20 | GO:0070402: NADPH binding | 4.12E-04 |
| 21 | GO:0004550: nucleoside diphosphate kinase activity | 5.92E-04 |
| 22 | GO:0043023: ribosomal large subunit binding | 5.92E-04 |
| 23 | GO:0008097: 5S rRNA binding | 5.92E-04 |
| 24 | GO:0001872: (1->3)-beta-D-glucan binding | 5.92E-04 |
| 25 | GO:0003723: RNA binding | 6.02E-04 |
| 26 | GO:0019843: rRNA binding | 7.81E-04 |
| 27 | GO:0016279: protein-lysine N-methyltransferase activity | 7.86E-04 |
| 28 | GO:0001053: plastid sigma factor activity | 7.86E-04 |
| 29 | GO:0016987: sigma factor activity | 7.86E-04 |
| 30 | GO:0004040: amidase activity | 9.92E-04 |
| 31 | GO:0003746: translation elongation factor activity | 1.94E-03 |
| 32 | GO:0003729: mRNA binding | 2.46E-03 |
| 33 | GO:0008047: enzyme activator activity | 3.15E-03 |
| 34 | GO:0044183: protein binding involved in protein folding | 3.47E-03 |
| 35 | GO:0042803: protein homodimerization activity | 3.50E-03 |
| 36 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.16E-03 |
| 37 | GO:0031072: heat shock protein binding | 4.16E-03 |
| 38 | GO:0004176: ATP-dependent peptidase activity | 6.46E-03 |
| 39 | GO:0008565: protein transporter activity | 7.10E-03 |
| 40 | GO:0016887: ATPase activity | 7.50E-03 |
| 41 | GO:0003727: single-stranded RNA binding | 7.74E-03 |
| 42 | GO:0008514: organic anion transmembrane transporter activity | 7.74E-03 |
| 43 | GO:0047134: protein-disulfide reductase activity | 8.19E-03 |
| 44 | GO:0004791: thioredoxin-disulfide reductase activity | 9.58E-03 |
| 45 | GO:0003743: translation initiation factor activity | 9.58E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.16E-02 |
| 47 | GO:0008483: transaminase activity | 1.26E-02 |
| 48 | GO:0008237: metallopeptidase activity | 1.26E-02 |
| 49 | GO:0005507: copper ion binding | 1.40E-02 |
| 50 | GO:0003735: structural constituent of ribosome | 1.50E-02 |
| 51 | GO:0030247: polysaccharide binding | 1.54E-02 |
| 52 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.65E-02 |
| 53 | GO:0005525: GTP binding | 1.68E-02 |
| 54 | GO:0003924: GTPase activity | 2.33E-02 |
| 55 | GO:0043621: protein self-association | 2.47E-02 |
| 56 | GO:0004519: endonuclease activity | 2.54E-02 |
| 57 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.61E-02 |
| 58 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.89E-02 |
| 59 | GO:0003690: double-stranded DNA binding | 2.97E-02 |
| 60 | GO:0015035: protein disulfide oxidoreductase activity | 3.80E-02 |
| 61 | GO:0030170: pyridoxal phosphate binding | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.94E-52 |
| 2 | GO:0009570: chloroplast stroma | 1.68E-33 |
| 3 | GO:0009941: chloroplast envelope | 4.62E-19 |
| 4 | GO:0009579: thylakoid | 2.61E-09 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.33E-06 |
| 6 | GO:0009508: plastid chromosome | 4.98E-06 |
| 7 | GO:0009536: plastid | 1.02E-05 |
| 8 | GO:0009706: chloroplast inner membrane | 5.36E-05 |
| 9 | GO:0009295: nucleoid | 7.22E-05 |
| 10 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.06E-04 |
| 11 | GO:0005759: mitochondrial matrix | 1.23E-04 |
| 12 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.48E-04 |
| 13 | GO:0005840: ribosome | 2.96E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 3.85E-04 |
| 15 | GO:0033281: TAT protein transport complex | 4.12E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 4.12E-04 |
| 17 | GO:0009539: photosystem II reaction center | 2.24E-03 |
| 18 | GO:0005763: mitochondrial small ribosomal subunit | 2.53E-03 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 5.94E-03 |
| 20 | GO:0042651: thylakoid membrane | 6.05E-03 |
| 21 | GO:0005623: cell | 6.10E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 1.01E-02 |
| 23 | GO:0009534: chloroplast thylakoid | 1.13E-02 |
| 24 | GO:0010319: stromule | 1.26E-02 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 1.37E-02 |
| 26 | GO:0009707: chloroplast outer membrane | 1.65E-02 |
| 27 | GO:0005622: intracellular | 1.85E-02 |
| 28 | GO:0031977: thylakoid lumen | 2.21E-02 |